STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT71555.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (378 aa)    
Predicted Functional Partners:
SFT71536.1
Acyl dehydratase.
 
  
  0.813
SFT71505.1
Hypothetical protein.
    
  0.746
SFT71569.1
Transglutaminase-like superfamily protein.
 
     0.736
SFT71519.1
Acetyl-CoA acetyltransferase.
    
  0.722
SFT71604.1
Acyl-CoA dehydrogenase.
 
 
  0.710
SFT71617.1
Hypothetical protein.
 
 
  0.658
SFT71587.1
Acyl dehydratase.
    
  0.636
SFT71490.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
    
0.622
SFT71475.1
formyl-CoA transferase; Belongs to the CoA-transferase III family.
 
    
0.602
SFT47800.1
methylmalonyl-CoA mutase.
    
 0.537
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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