STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT84552.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
SFT56491.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.708
SFU06152.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.660
SFU21612.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.626
SFT59921.1
Hypothetical protein.
  
    0.619
SFT84533.1
CBS domain-containing protein.
  
    0.597
SFU16904.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.572
SFU08095.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.561
SFT84571.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
       0.543
SFU02145.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.542
SFT43935.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.538
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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