STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT97728.1Putative membrane protein. (331 aa)    
Predicted Functional Partners:
SFT97753.1
Hypothetical protein.
 
  
 0.995
SFT97739.1
Ribosomal protein S18 acetylase RimI.
       0.814
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.707
SFT68606.1
Invasion protein IalB, involved in pathogenesis.
  
     0.614
SFU03583.1
Hypothetical protein.
  
    0.585
SFT96407.1
HemY protein.
  
     0.582
SFT82027.1
Hypothetical protein.
  
     0.541
SFT35910.1
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
     0.537
SFU03550.1
OmpA-OmpF porin, OOP family.
  
     0.523
SFT67773.1
Lysophospholipase.
  
     0.504
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.