STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU07851.1Biopolymer transport protein ExbB. (208 aa)    
Predicted Functional Partners:
SFU07830.1
Biopolymer transport protein ExbD.
 
 
 0.986
SFU07840.1
Biopolymer transport protein ExbD.
 
 
 0.983
SFU07862.1
Hypothetical protein.
 
     0.916
SFU15980.1
Outer membrane transport energization protein TonB.
 
 
 0.915
SFU16000.1
Outer membrane transport energization protein ExbD.
 
 
 0.912
SFT97465.1
Cell division and transport-associated protein TolR.
 
 
 0.910
SFU15990.1
Biopolymer transport protein ExbD.
 
 
 0.882
SFT97453.1
Cell division and transport-associated protein TolA.
  
 
 0.873
SFU07820.1
Protein of unknown function.
       0.723
SFT95741.1
Lipopolysaccharide export system ATP-binding protein.
 
   
 0.708
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.