STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU07969.1Type VI secretion protein, EvpB/VC_A0108 family/type VI secretion protein, VC_A0107 family. (1417 aa)    
Predicted Functional Partners:
SFU07911.1
Type VI secretion system secreted protein Hcp.
 
 0.999
SFU07920.1
Type VI secretion system protein ImpE.
 
   0.999
SFU08014.1
Type VI secretion system protein ImpJ.
 
 
 0.999
SFU08024.1
Type VI secretion system protein ImpK.
 
  
 0.999
SFU07945.1
Type VI secretion system protein ImpH.
 
 
 0.998
SFU07901.1
Type VI secretion system protein ImpC.
 
0.997
SFU07936.1
Type VI secretion system protein ImpG.
 
  
 0.997
SFU07954.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 0.997
SFU08034.1
Type VI secretion system protein ImpL.
 
 
 0.996
SFU07882.1
Type VI secretion system protein ImpA.
 
 
 0.995
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.