STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU08044.1Type VI secretion system protein ImpM. (225 aa)    
Predicted Functional Partners:
SFU08024.1
Type VI secretion system protein ImpK.
 
  
 0.995
SFU08054.1
Protein phosphatase/serine/threonine protein phosphatase Stp1.
 
 0.995
SFU07920.1
Type VI secretion system protein ImpE.
 
  
 0.979
SFU07969.1
Type VI secretion protein, EvpB/VC_A0108 family/type VI secretion protein, VC_A0107 family.
 
  
 0.976
SFU08034.1
Type VI secretion system protein ImpL.
 
  
 0.968
SFU08014.1
Type VI secretion system protein ImpJ.
 
  
 0.945
SFU08004.1
FHA domain protein.
 
  
 0.944
SFU07979.1
Type VI secretion system secreted protein VgrG.
 
  
 0.933
SFU07929.1
Type VI secretion system protein ImpF.
 
  
 0.928
SFU07936.1
Type VI secretion system protein ImpG.
 
  
 0.926
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.