STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU09625.1crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)    
Predicted Functional Partners:
SFT36060.1
Histidine kinase.
    
 0.964
SFU09648.1
acyl-CoA dehydrogenase.
 
  0.951
SFU09638.1
acetyl-CoA synthetase.
 
 
  0.950
SFT54733.1
Signal transduction histidine kinase.
    
  0.945
SFT94370.1
Signal transduction histidine kinase.
    
  0.945
SFT88155.1
3-hydroxyacyl-CoA dehydrogenase.
 0.934
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 0.843
SFU10586.1
3-hydroxyacyl-CoA dehydrogenase.
 
  0.768
SFU19456.1
3-hydroxybutyryl-CoA dehydrogenase/5-formyl-3-hydroxy-2-methylpyridine 4-carboxylate dehydrogenase.
 
  0.761
SFU10496.1
crotonobetaine/carnitine-CoA ligase.
 
 
 0.683
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.