STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU18024.1Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. (226 aa)    
Predicted Functional Partners:
SFU18019.1
Exopolysaccharide biosynthesis protein YbjH.
 
     0.956
SFU17998.1
Polysaccharide export outer membrane protein.
 
     0.744
SFU18013.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
     0.628
SFU18003.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.550
SFU18029.1
Hypothetical protein.
       0.437
SFU17943.1
Capsular polysaccharide transport system permease protein.
  
     0.430
SFT35556.1
Hypothetical protein.
  
     0.418
SFU08961.1
Endonuclease/Exonuclease/phosphatase family protein.
  
     0.417
SFU18008.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
     0.417
SFU16624.1
Methyltransferase, FkbM family.
  
    0.409
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.