STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU19581.1CheY chemotaxis protein or a CheY-like REC (receiver) domain. (270 aa)    
Predicted Functional Partners:
SFU19600.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
  
 0.971
SFT36060.1
Histidine kinase.
  
 0.956
SFT86351.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
 
 0.956
SFU19137.1
Hypothetical protein.
  
 0.952
SFU19594.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
  
 0.927
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.920
SFU20704.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
  
 
 0.913
SFU00658.1
Diguanylate cyclase/phosphodiesterase.
  
 0.905
SFU14572.1
Response regulator receiver modulated diguanylate cyclase.
  
 0.904
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.901
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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