STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU20339.1Plasmid replication initiator protein. (352 aa)    
Predicted Functional Partners:
SFU20331.1
AAA domain-containing protein.
       0.762
SFU20334.1
Hypothetical protein.
       0.762
SFU17959.1
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain.
  
     0.754
SFU17965.1
Chromosome partitioning protein.
 
     0.753
SFT86153.1
Chromosome partitioning protein.
 
     0.704
SFU18932.1
Type IV secretion system protein VirD4.
 
     0.528
SFU12616.1
Chromosome partitioning protein.
 
     0.481
SFU21455.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
     0.459
SFT86142.1
Chromosome partitioning protein, ParB family.
  
     0.450
SFU18911.1
Plasmid segregation oscillating ATPase ParF.
     0.434
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.