STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
graSSensor histidine kinase GraS. (371 aa)    
Predicted Functional Partners:
graR
Response regulator protein GraR.
 0.978
yxdM
ABC transporter permease protein YxdM.
 
 
 
 0.933
yxdL
ABC transporter ATP-binding protein YxdL.
 
   
 0.906
pleD
Response regulator PleD.
  
 0.903
cph2
Phytochrome-like protein cph2.
  
 0.885
gmr
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.885
walK
Sensor protein kinase WalK.
 
0.875
regX3_2
Sensory transduction protein regX3.
 0.856
yycF_2
Transcriptional regulatory protein YycF.
 0.848
srrA_3
Transcriptional regulatory protein SrrA.
 0.846
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.