STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inhA_1Isonitrile hydratase. (197 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.576
bdhA
NADH-dependent butanol dehydrogenase A.
  
    0.456
KLU62920.1
Hypothetical protein.
       0.455
KLU62922.1
Hypothetical protein.
       0.445
opuCC_2
Carnitine transport binding protein OpuCC precursor.
   
    0.422
osmF
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
   
    0.422
yesS_2
HTH-type transcriptional regulator YesS.
 
 
 0.416
KLU59411.1
MarR family protein.
  
  
 0.406
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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