Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| birA | guaA | CEB3_c15450 | CEB3_c34990 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.802 |
| birA | nifJ_2 | CEB3_c15450 | CEB3_c27260 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Pyruvate-flavodoxin oxidoreductase. | 0.709 |
| birA | nifJ_3 | CEB3_c15450 | CEB3_c44130 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Pyruvate-flavodoxin oxidoreductase. | 0.805 |
| birA | nifJ_4 | CEB3_c15450 | CEB3_c47060 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Pyruvate-flavodoxin oxidoreductase. | 0.709 |
| birA | pgi | CEB3_c15450 | CEB3_c14460 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.591 |
| birA | psuG | CEB3_c15450 | CEB3_c10640 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Pseudouridine-5'-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.625 |
| birA | psuK | CEB3_c15450 | CEB3_c10650 | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | Pseudouridine kinase. | 0.766 |
| guaA | birA | CEB3_c34990 | CEB3_c15450 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.802 |
| guaA | pgi | CEB3_c34990 | CEB3_c14460 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.667 |
| guaA | psuK | CEB3_c34990 | CEB3_c10650 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | Pseudouridine kinase. | 0.773 |
| guaA | ptsG | CEB3_c34990 | CEB3_c20160 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | PTS system glucose-specific EIICBA component. | 0.709 |
| nifJ_1 | nifJ_2 | CEB3_c04240 | CEB3_c27260 | Pyruvate-flavodoxin oxidoreductase. | Pyruvate-flavodoxin oxidoreductase. | 0.999 |
| nifJ_1 | nifJ_3 | CEB3_c04240 | CEB3_c44130 | Pyruvate-flavodoxin oxidoreductase. | Pyruvate-flavodoxin oxidoreductase. | 0.999 |
| nifJ_1 | nifJ_4 | CEB3_c04240 | CEB3_c47060 | Pyruvate-flavodoxin oxidoreductase. | Pyruvate-flavodoxin oxidoreductase. | 0.999 |
| nifJ_1 | pgi | CEB3_c04240 | CEB3_c14460 | Pyruvate-flavodoxin oxidoreductase. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.954 |
| nifJ_1 | psuK | CEB3_c04240 | CEB3_c10650 | Pyruvate-flavodoxin oxidoreductase. | Pseudouridine kinase. | 0.804 |
| nifJ_1 | ptsG | CEB3_c04240 | CEB3_c20160 | Pyruvate-flavodoxin oxidoreductase. | PTS system glucose-specific EIICBA component. | 0.641 |
| nifJ_2 | birA | CEB3_c27260 | CEB3_c15450 | Pyruvate-flavodoxin oxidoreductase. | Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. | 0.709 |
| nifJ_2 | nifJ_1 | CEB3_c27260 | CEB3_c04240 | Pyruvate-flavodoxin oxidoreductase. | Pyruvate-flavodoxin oxidoreductase. | 0.999 |
| nifJ_2 | nifJ_3 | CEB3_c27260 | CEB3_c44130 | Pyruvate-flavodoxin oxidoreductase. | Pyruvate-flavodoxin oxidoreductase. | 0.999 |
page 1 of 4