STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabD_1Succinate-semialdehyde dehydrogenase [NADP(+)] GabD. (481 aa)    
Predicted Functional Partners:
fadM
Proline dehydrogenase 1.
 
 0.947
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
   
 0.908
yqaB
Fructose-1-phosphate phosphatase YqaB.
  
 
 0.849
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 0.831
nifJ_4
Pyruvate-flavodoxin oxidoreductase.
  
 0.831
gabT
4-aminobutyrate aminotransferase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.823
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
 0.822
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
   
 0.821
KLU62271.1
Cupin domain protein.
 
   
 0.812
serA
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 0.793
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
Server load: low (24%) [HD]