STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citE_1Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family. (294 aa)    
Predicted Functional Partners:
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
 
 0.975
citF
Citrate lyase alpha chain.
 
  
 0.966
frc_2
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
 
 
 0.909
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.891
nifJ_4
Pyruvate-flavodoxin oxidoreductase.
    
 0.891
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.868
cfiA_1
2-oxoglutarate carboxylase large subunit.
  
 
 0.858
KLU62173.1
NAD-dependent malic enzyme.
  
 
 0.839
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.798
sucC_2
succinyl-CoA ligase [ADP-forming] subunit beta.
 
  
 0.709
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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