STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhD_1Putative sporulation-specific glycosylase YdhD. (382 aa)    
Predicted Functional Partners:
pdaA
peptidoglycan-N-acetylmuramic acid deacetylase PdaA precursor.
 
    
 0.904
pgdA_2
peptidoglycan-N-acetylglucosamine deacetylase.
 
    
 0.904
pgdA_1
peptidoglycan-N-acetylglucosamine deacetylase.
 
    
 0.671
lytC_2
N-acetylmuramoyl-L-alanine amidase LytC precursor.
       0.491
nagJ
O-GlcNAcase NagJ precursor.
    
 0.439
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.429
yndE_3
Spore germination protein YndE.
  
     0.420
nagZ
Beta-hexosaminidase precursor.
     
 0.413
KLU62068.1
Integral membrane protein TerC family protein.
       0.409
rnmV_1
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
       0.409
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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