STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykuD_2Putative L,D-transpeptidase YkuD. (212 aa)    
Predicted Functional Partners:
KLU61769.1
Hypothetical protein.
       0.773
spoIIIE_2
DNA translocase SpoIIIE.
     
 0.747
KLU61770.1
Hypothetical protein.
       0.741
KLU61771.1
Hypothetical protein.
       0.741
KLU61772.1
Hypothetical protein.
       0.741
KLU61767.1
Hypothetical protein.
       0.723
moaA_1
Cyclic pyranopterin monophosphate synthase.
       0.716
KLU61775.1
Inner membrane protein.
       0.716
KLU61776.1
Hypothetical protein.
       0.716
KLU61766.1
Hypothetical protein.
       0.444
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.