Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KLU61335.1 | cshA_1 | CEB3_c22750 | CEB3_c14910 | Hypothetical protein. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.770 |
KLU61335.1 | cshA_2 | CEB3_c22750 | CEB3_c25210 | Hypothetical protein. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.804 |
KLU61335.1 | dnaN | CEB3_c22750 | CEB3_c41080 | Hypothetical protein. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.832 |
KLU61335.1 | hdaH | CEB3_c22750 | CEB3_c50720 | Hypothetical protein. | Histone deacetylase-like amidohydrolase. | 0.813 |
KLU61335.1 | polA | CEB3_c22750 | CEB3_c20040 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.948 |
KLU61335.1 | rapA_2 | CEB3_c22750 | CEB3_c22760 | Hypothetical protein. | RNA polymerase-associated protein RapA. | 0.993 |
KLU61335.1 | rpoA | CEB3_c22750 | CEB3_c38640 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.877 |
KLU61335.1 | rpoB | CEB3_c22750 | CEB3_c38290 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.870 |
KLU61335.1 | rpoZ | CEB3_c22750 | CEB3_c33710 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.873 |
KLU61335.1 | udk | CEB3_c22750 | CEB3_c34310 | Hypothetical protein. | Uridine kinase. | 0.742 |
cshA_1 | KLU61335.1 | CEB3_c14910 | CEB3_c22750 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.770 |
cshA_1 | cshA_2 | CEB3_c14910 | CEB3_c25210 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.816 |
cshA_1 | rapA_2 | CEB3_c14910 | CEB3_c22760 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | RNA polymerase-associated protein RapA. | 0.802 |
cshA_1 | rpoA | CEB3_c14910 | CEB3_c38640 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.818 |
cshA_1 | rpoB | CEB3_c14910 | CEB3_c38290 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.784 |
cshA_1 | rpoZ | CEB3_c14910 | CEB3_c33710 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.734 |
cshA_2 | KLU61335.1 | CEB3_c25210 | CEB3_c22750 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.804 |
cshA_2 | cshA_1 | CEB3_c25210 | CEB3_c14910 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.816 |
cshA_2 | rapA_2 | CEB3_c25210 | CEB3_c22760 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | RNA polymerase-associated protein RapA. | 0.815 |
cshA_2 | rpoA | CEB3_c25210 | CEB3_c38640 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.818 |
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