STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLU60890.1Hypothetical protein. (250 aa)    
Predicted Functional Partners:
sigE_1
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.810
yxdL
ABC transporter ATP-binding protein YxdL.
   
 
 0.655
macB_1
Macrolide export ATP-binding/permease protein MacB.
   
 
 0.655
KLU60889.1
Hypothetical protein.
       0.584
amiA
N-acetylmuramoyl-L-alanine amidase AmiA precursor.
    
   0.536
lytC_2
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
   0.536
lytC_5
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
   0.536
cwlD
Germination-specific N-acetylmuramoyl-L-alanine amidase precursor.
    
   0.536
lytC_11
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
   0.536
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.