STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgA_3KHG/KDPG aldolase. (224 aa)    
Predicted Functional Partners:
kdgK_1
2-dehydro-3-deoxygluconokinase.
 
 0.939
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.802
iolC_1
5-dehydro-2-deoxygluconokinase.
 
 0.802
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
  0.787
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.778
nifJ_4
Pyruvate-flavodoxin oxidoreductase.
    
  0.778
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.742
ptsG
PTS system glucose-specific EIICBA component.
  
 
 0.734
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.703
pgiA
Glucose-6-phosphate isomerase.
 
  
  0.687
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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