STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCA_1Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA. (379 aa)    
Predicted Functional Partners:
opuCD_1
Glycine betaine/carnitine/choline transport system permease protein OpuCD.
 0.991
opuCD_2
Carnitine transport permease protein OpuCD.
 0.984
opuCC_2
Carnitine transport binding protein OpuCC precursor.
 0.983
opuCB_2
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
 0.969
osmF
Putative osmoprotectant uptake system substrate-binding protein OsmF precursor.
 0.965
opuBB
Choline transport system permease protein OpuBB.
 0.959
opuCC_1
Carnitine transport binding protein OpuCC precursor.
 0.945
opuCB_1
Carnitine transport permease protein OpuCB.
 0.939
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
      0.892
cysW_1
Sulfate transport system permease protein CysW.
 
      0.794
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.