STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fnrAnaerobic regulatory protein. (224 aa)    
Predicted Functional Partners:
nifJ_3
Pyruvate-flavodoxin oxidoreductase.
    
 0.781
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
 0.770
nifJ_4
Pyruvate-flavodoxin oxidoreductase.
    
 0.770
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.719
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.704
trxB_1
Thioredoxin reductase.
    
 0.698
preT
NAD-dependent dihydropyrimidine dehydrogenase subunit PreT.
    
 0.638
queD
6-carboxy-5,6,7,8-tetrahydropterin synthase.
    
  0.628
sfrB_2
NADPH-Fe(3+) oxidoreductase subunit beta.
    
 0.626
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.604
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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