STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiB_3Putative protein kinase UbiB. (555 aa)    
Predicted Functional Partners:
KLU59752.1
Poly(hydroxyalcanoate) granule associated protein (phasin).
 
     0.881
gph_1
Phosphoglycolate phosphatase.
   
    0.660
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
   
  0.539
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.508
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
    
 0.497
tehB
Tellurite methyltransferase.
   
 
 0.405
rebM_1
demethylrebeccamycin-D-glucose O-methyltransferase.
   
 
 0.405
KLU61128.1
O-methyltransferase.
   
 
 0.405
bioC_3
Malonyl-[acyl-carrier protein] O-methyltransferase.
   
 
 0.405
ubiG
Ubiquinone biosynthesis O-methyltransferase.
   
 
 0.405
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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