STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedKPutative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (224 aa)    
Predicted Functional Partners:
KLU59853.1
Putative acyl-CoA thioester hydrolase.
       0.773
lepA
Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
      0.676
KLU59850.1
Aminoalkylphosphonic acid N-acetyltransferase.
       0.565
xerC_3
Tyrosine recombinase XerC.
  
  
 0.497
nudG_2
CTP pyrophosphohydrolase; Belongs to the Nudix hydrolase family.
       0.453
KLU63603.1
Hypothetical protein.
   
  
 0.424
xerD_1
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.424
xerC_1
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
  
 0.424
xerD_2
Tyrosine recombinase XerD.
   
  
 0.424
xerD_3
Tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.424
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.