STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytC_14N-acetylmuramoyl-L-alanine amidase LytC precursor. (619 aa)    
Predicted Functional Partners:
ebgA
Evolved beta-galactosidase subunit alpha.
  
    0.759
KLU59254.1
Hypothetical protein.
  
     0.738
KLU60797.1
Hypothetical protein.
  
     0.711
KLU60117.1
NYN domain protein.
  
     0.690
shc
Squalene--hopene cyclase.
  
     0.662
KLU60472.1
HlyD family secretion protein.
  
     0.634
KLU62207.1
Tetratricopeptide repeat protein.
  
     0.633
KLU62114.1
Undecaprenyl pyrophosphate phosphatase.
  
     0.622
KLU62113.1
Hypothetical protein.
  
     0.616
kfoC
Chondroitin synthase.
  
  
  0.614
Your Current Organism:
Peptococcaceae bacterium CEB3
NCBI taxonomy Id: 999898
Other names: P. bacterium CEB3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.