Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM98AFamily with sequence similarity 98 member A. (520 aa)    
Predicted Functional Partners:
RTCB
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
    
 0.993
DDX1
DEAD-box helicase 1.
   
 0.990
FAM98B
Family with sequence similarity 98 member B.
   
 
0.975
RTRAF
RNA transcription, translation and transport factor.
    
 0.966
ATXN2L
Ataxin 2 like.
    
 
 0.961
NUFIP2
Nuclear FMR1 interacting protein 2.
    
 
 0.956
ATXN2
Ataxin 2.
    
 
 0.954
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.951
ENSUPAP00010017608
annotation not available
    
 
 0.950
RNF20
Ring finger protein 20.
    
   0.936
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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