STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM98AFamily with sequence similarity 98 member A. (520 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.994
RTRAF
RNA transcription, translation and transport factor.
    
 0.985
ENSUPAP00010017608
annotation not available
    
 0.985
RTCB
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
    
 0.959
C2orf49
Chromosome unknown C2orf49 homolog.
     
 0.957
SLFNL1
Schlafen like 1.
   
 0.934
FAM98B
Family with sequence similarity 98 member B.
    
 
0.927
NUFIP2
Nuclear FMR1 interacting protein 2.
    
 
 0.815
ATXN2
Ataxin 2.
    
 
 0.759
G3BP1
G3BP stress granule assembly factor 1.
   
 
 0.695
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.