STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HAO1Hydroxyacid oxidase 1. (370 aa)    
Predicted Functional Partners:
LDHD
Lactate dehydrogenase D.
  
 0.958
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 0.957
MVD
Mevalonate diphosphate decarboxylase.
    
 0.922
GRHPR
Glyoxylate and hydroxypyruvate reductase.
  
 
 0.914
LOC113189852
L-gulonolactone oxidase.
  
 0.908
GGNBP2
Gametogenetin binding protein 2.
  
 0.908
MVK
Mevalonate kinase.
    
 0.906
AGPS
Alkylglycerone phosphate synthase.
  
 0.905
DAO
D-amino acid oxidase.
  
 
 0.895
AGXT2
Alanine--glyoxylate aminotransferase 2.
   
 
 0.892
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.