STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH3alkB homolog 3, alpha-ketoglutaratedependent dioxygenase. (284 aa)    
Predicted Functional Partners:
KDM6A
Lysine demethylase 6A.
   
 0.949
KDM6B
Lysine demethylase 6B.
   
 0.949
ENSUPAP00010022117
annotation not available
   
 0.949
ASCC3
Activating signal cointegrator 1 complex subunit 3.
    
 0.910
ARID4A
AT-rich interaction domain 4A.
   
 0.906
ARID4B
AT-rich interaction domain 4B.
   
 0.906
ASCC2
Activating signal cointegrator 1 complex subunit 2.
    
 0.883
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.882
HAT1
Histone acetyltransferase 1.
    
 0.875
MPHOSPH8
M-phase phosphoprotein 8.
    
 0.875
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.