STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRE11MRE11 homolog, double strand break repair nuclease. (707 aa)    
Predicted Functional Partners:
BARD1
BRCA1 associated RING domain 1.
   
 0.999
NBN
Nibrin.
    
 0.999
ENSUPAP00010020297
annotation not available
  
 0.999
ATM
ATM serine/threonine kinase.
   
 0.996
BRIP1
BRCA1 interacting protein C-terminal helicase 1.
  
 0.996
RBBP8
RB binding protein 8, endonuclease.
   
 0.994
EXO1
Exonuclease 1.
  
 0.994
ENSUPAP00010006918
annotation not available
    
 0.993
BLM
BLM RecQ like helicase.
  
 0.993
ENSUPAP00010000380
annotation not available
   
 0.992
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.