STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPNE1Copine 1. (537 aa)    
Predicted Functional Partners:
RNASEH2B
Ribonuclease H2 subunit B.
   
 0.899
RNASEH2A
Ribonuclease H2 subunit A.
   
 0.881
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.610
MRTFA
Myocardin related transcription factor A.
     
 0.599
RUVBL1
RuvB like AAA ATPase 1.
   
 
  0.598
RUVBL2
RuvB like AAA ATPase 2.
   
 
  0.588
ACTR8
Actin related protein 8.
     
 0.588
PI4KB
Phosphatidylinositol 4-kinase beta.
     
 0.575
CAPZB
Capping actin protein of muscle Z-line subunit beta.
     
 0.554
WWP1
WW domain containing E3 ubiquitin protein ligase 1.
   
 0.554
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.