STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAXENAD(P)HX epimerase. (288 aa)    
Predicted Functional Partners:
DCP2
Decapping mRNA 2.
  
 0.987
NAXD
NAD(P)HX dehydratase.
  
 
 0.967
DDX6
DEAD-box helicase 6.
   
 0.966
KIFBP
Kinesin family binding protein.
   
 0.966
DCP1B
Decapping mRNA 1B.
   
 0.965
DCP1A
Decapping mRNA 1A.
   
 0.965
PNPO
Pyridoxamine 5'-phosphate oxidase.
   
 0.941
EDC4
Enhancer of mRNA decapping 4.
   
 0.931
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.927
PATL2
PAT1 homolog 2.
    
 0.927
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.