STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT44tRNA methyltransferase 44 homolog. (731 aa)    
Predicted Functional Partners:
PUS1
Pseudouridine synthase 1.
   
  
 0.764
TRMT6
tRNA methyltransferase 6.
   
  
 0.722
METTL1
Methyltransferase like 1.
   
  
 0.685
TRMT61A
tRNA methyltransferase 61A.
   
  
 0.656
FTSJ1
FtsJ RNA 2'-O-methyltransferase 1.
   
  
 0.603
TRMT13
tRNA methyltransferase 13 homolog.
   
  
 0.603
PUS3
Pseudouridine synthase 3.
   
  
 0.602
TARBP1
TAR (HIV-1) RNA binding protein 1.
   
  
 0.583
WDR4
WD repeat domain 4.
   
  
 0.582
TRUB1
TruB pseudouridine synthase family member 1.
   
  
 0.579
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.