STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IWS1Interacts with SUPT6H, CTD assembly factor 1. (845 aa)    
Predicted Functional Partners:
SUPT6H
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.999
SSRP1
Structure specific recognition protein 1.
   
 0.985
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.985
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.984
CTDP1
CTD phosphatase subunit 1.
   
 0.978
Polr2a
RNA polymerase II subunit A.
   
 0.976
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.973
EEPD1
Endonuclease/exonuclease/phosphatase family domain containing 1.
   
 0.969
POLR2C
RNA polymerase II subunit C.
    
 0.969
ENSUPAP00010026197
annotation not available
   
 0.969
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.