STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDHAC2Protocadherin alpha subfamily C, 2. (1006 aa)    
Predicted Functional Partners:
JUP
Junction plakoglobin.
    
 0.618
UCKL1
Uridine-cytidine kinase 1 like 1.
    
 0.593
CTNNB1
Catenin beta 1.
    
 0.593
UCK2
Uridine-cytidine kinase 2.
    
 0.593
UCK1
Uridine-cytidine kinase 1.
    
 0.593
LHFPL2
LHFPL tetraspan subfamily member 2.
    
  0.590
MYO9A
Myosin IXA.
    
 0.562
MYO9B
Myosin IXB.
    
 0.562
CTNNAL1
Catenin alpha like 1.
    
 0.545
FAT1
FAT atypical cadherin 1.
    
 
0.526
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.