STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP50Ubiquitin specific peptidase 50. (382 aa)    
Predicted Functional Partners:
MRPL21
Mitochondrial ribosomal protein L21.
   
 
 0.755
MRPS9
Mitochondrial ribosomal protein S9.
   
 
 0.743
MRPS16
Mitochondrial ribosomal protein S16.
   
 
 0.740
MRPL3
Mitochondrial ribosomal protein L3.
   
 
 0.739
MRPS14
Mitochondrial ribosomal protein S14.
    
 0.737
MRPL11
Mitochondrial ribosomal protein L11.
    
 
 0.737
MRPL4
Mitochondrial ribosomal protein L4.
    
 
 0.717
PCNA
Proliferating cell nuclear antigen.
   
  0.713
MRPL20
Mitochondrial ribosomal protein L20.
   
   0.705
MRPS12
Mitochondrial ribosomal protein S12.
   
   0.702
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.