STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTARab geranylgeranyltransferase subunit alpha. (587 aa)    
Predicted Functional Partners:
ENSUPAP00010018860
annotation not available
    
 0.999
CHM
CHM Rab escort protein.
    
 0.997
ENSUPAP00010026812
annotation not available
    
 0.993
RAB22A
RAB22A, member RAS oncogene family.
    
 0.926
RAB31
RAB31, member RAS oncogene family.
    
 0.925
ENSUPAP00010020720
annotation not available
    
 0.896
RAB7B
RAB7B, member RAS oncogene family.
    
 0.890
RAB24
RAB24, member RAS oncogene family.
    
 0.874
RAB1B
RAB1B, member RAS oncogene family.
    
 0.868
YKT6
YKT6 v-SNARE homolog.
    
 
 0.840
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.