STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113201031Histone H2B type 1. (126 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.906
KDM6A
Lysine demethylase 6A.
    
 0.885
KDM6B
Lysine demethylase 6B.
    
 0.885
ENSUPAP00010022117
annotation not available
    
 0.885
MACROH2A2
macroH2A.2 histone.
   
 0.875
MACROH2A1
macroH2A.1 histone.
   
 0.875
HDAC2
Histone deacetylase 2.
    
 0.856
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.847
ENSUPAP00010007288
annotation not available
 
 0.838
LOC113195951
Histone H2A type 1-B/E.
 
 0.838
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.