STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL9A2Collagen type IX alpha 2 chain. (688 aa)    
Predicted Functional Partners:
COL9A1
Collagen type IX alpha 1 chain.
  
 
0.989
Col9a3
Collagen type IX alpha 3 chain.
  
0.987
ENSUPAP00010016437
annotation not available
    
 0.854
ITGB5
Integrin subunit beta 5.
    
 0.854
ITGAV
Integrin subunit alpha V.
   
 0.853
ITGA1
Integrin subunit alpha 1.
     
 0.852
ITGB1
Integrin subunit beta 1.
    
 0.851
ITGB7
Integrin subunit beta 7.
    
 0.851
ITGB6
Integrin subunit beta 6.
    
 0.849
ITGB8
Integrin subunit beta 8.
    
 0.846
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.