STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFWD3Ring finger and WD repeat domain 3. (808 aa)    
Predicted Functional Partners:
RPA3
Replication protein A3.
    
 
 0.990
RPA1
Replication protein A1.
   
 0.988
ENSUPAP00010002390
annotation not available
    
   0.913
ENSUPAP00010002398
annotation not available
    
   0.913
B2M
Beta-2-microglobulin.
    
 0.893
MEIOB
Meiosis specific with OB-fold.
   
 0.884
STN1
STN1 subunit of CST complex.
    
 0.752
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
    
 
 0.743
TRPM7
Transient receptor potential cation channel subfamily M member 7.
     
 0.741
SASS6
SAS-6 centriolar assembly protein.
    
 0.736
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.