STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH5alkB homolog 5, RNA demethylase. (394 aa)    
Predicted Functional Partners:
FTO
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.879
AFDN
Afadin, adherens junction formation factor.
    
  0.756
MED7
Mediator complex subunit 7.
   
 
  0.619
METTL14
Methyltransferase like 14.
   
  
 0.595
ENSUPAP00010003720
annotation not available
   
  
 0.580
TRMT112
tRNA methyltransferase subunit 11-2.
   
 
 0.561
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
      
 0.561
ENSUPAP00010024183
annotation not available
   
 
 0.561
DDX46
DEAD-box helicase 46.
      
 0.558
ALKBH1
alkB homolog 1, histone H2A dioxygenase.
      
 0.557
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.