STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM13Histocompatibility minor 13. (394 aa)    
Predicted Functional Partners:
DERL1
Derlin 1.
   
 0.983
RNF139
Ring finger protein 139.
    
 0.981
AMFR
Autocrine motility factor receptor.
   
 0.945
SYVN1
Synoviolin 1.
   
 0.944
VCP
Valosin containing protein.
    
 0.944
SEL1L
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
     
 0.929
DERL3
Derlin 3.
   
 0.869
DERL2
Derlin 2.
   
 0.869
SEL1L2
SEL1L2 adaptor subunit of ERAD E3 ligase.
     
 0.865
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.856
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.