STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CATCatalase. (527 aa)    
Predicted Functional Partners:
SCP2
Sterol carrier protein 2.
   
 0.987
PARK7
Parkinsonism associated deglycase.
  
 0.975
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.971
SOD1
Superoxide dismutase 1.
  
 0.957
SOD3
Superoxide dismutase 3.
  
 0.957
ENSUPAP00010003729
annotation not available
  
 0.948
TREH
Trehalase.
   
  
 0.920
MTHFR
Methylenetetrahydrofolate reductase.
    
 0.907
YIPF6
Yip1 domain family member 6.
   
  
 0.904
PRDX6
Peroxiredoxin 6.
  
 
 0.900
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.