STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ltv1LTV1 ribosome biogenesis factor. (472 aa)    
Predicted Functional Partners:
RIOK2
RIO kinase 2.
   
 0.999
DIMT1
DIMT1 rRNA methyltransferase and ribosome maturation factor.
   
 0.999
BYSL
Bystin like.
   
 0.999
TSR1
TSR1 ribosome maturation factor.
   
 0.999
KRR1
KRR1 small subunit processome component homolog.
   
 0.999
NOB1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.999
RSRC1
Arginine and serine rich coiled-coil 1.
   
 0.998
RRP12
Ribosomal RNA processing 12 homolog.
   
 0.998
RIOK1
RIO kinase 1.
   
 0.998
NOP14
NOP14 nucleolar protein.
   
 0.997
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.