STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC27A6Solute carrier family 27 member 6. (561 aa)    
Predicted Functional Partners:
BBS9
Bardet-Biedl syndrome 9.
   
 0.949
BBS7
Bardet-Biedl syndrome 7.
    
 0.949
Bbs1
Bardet-Biedl syndrome 1.
   
 0.949
BBS4
Bardet-Biedl syndrome 4.
    
 0.943
ENSUPAP00010029485
annotation not available
    
 0.910
ENSUPAP00010014341
annotation not available
    
 0.892
ENSUPAP00010019359
annotation not available
    
 0.892
SCP2
Sterol carrier protein 2.
   
 
 0.879
KDM6A
Lysine demethylase 6A.
    
 0.860
KDM6B
Lysine demethylase 6B.
    
 0.860
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.