STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSSC4Tumor suppressing subtransferable candidate 4. (312 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
    
 
 0.986
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.974
AAR2
AAR2 splicing factor.
    
 
 0.943
CD2BP2
CD2 cytoplasmic tail binding protein 2.
    
 
 0.925
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 
 0.906
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.892
ECD
Ecdysoneless cell cycle regulator.
    
 
 0.873
EAPP
E2F associated phosphoprotein.
    
 
 0.854
ZNHIT2
Zinc finger HIT-type containing 2.
   
 
 0.837
HFM1
Helicase for meiosis 1.
    
 
 0.796
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.