STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting 13 homolog A. (3059 aa)    
Predicted Functional Partners:
VPS35
VPS35 retromer complex component.
   
 
 0.673
GAK
Cyclin G associated kinase.
    
 
 0.654
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.645
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.632
CHTF18
Chromosome transmission fidelity factor 18.
    
   0.607
SYNJ1
Synaptojanin 1.
    
 
 0.585
XK
X-linked Kx blood group.
    
 
 0.585
ATP13A2
ATPase cation transporting 13A2.
   
 
 0.554
LGALS8
Galectin 8.
   
 
 0.548
VAPA
VAMP associated protein A.
    
 
 0.542
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.