STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX17DEAD-box helicase 17. (650 aa)    
Predicted Functional Partners:
PES1
Pescadillo ribosomal biogenesis factor 1.
   
 0.981
WDR12
WD repeat domain 12.
   
 0.976
WDR74
WD repeat domain 74.
   
 0.970
NSA2
NSA2 ribosome biogenesis factor.
   
 0.969
DROSHA
Drosha ribonuclease III.
  
 0.966
DDX18
DEAD-box helicase 18.
  
0.966
Gnl2
G protein nucleolar 2.
  
 0.966
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
 0.965
EBNA1BP2
EBNA1 binding protein 2.
   
 0.959
SF3B1
Splicing factor 3b subunit 1.
   
 0.958
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.