STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDL3Rhomboid like 3. (404 aa)    
Predicted Functional Partners:
CASK
Calcium/calmodulin dependent serine protein kinase.
   
 0.930
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
  
 0.837
WDR90
WD repeat domain 90.
   
 0.836
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
  
 0.829
MYO3B
Myosin IIIB.
   
 0.816
MYO3A
Myosin IIIA.
   
 0.816
ENSUPAP00010012326
annotation not available
  
 0.788
RANBP2
RAN binding protein 2.
  
 0.788
XPC
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.757
RIPK4
Receptor interacting serine/threonine kinase 4.
  
 0.721
Your Current Organism:
Urocitellus parryii
NCBI taxonomy Id: 9999
Other names: Arctic ground squirrel, Citellus parryii, Spermophilus parryi, Spermophilus parryii, U. parryii
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.