exbD1 - STRING protein network

There are several matches for 'exbD1'.
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organism

protein

Acinetobacter calcoaceticus

exbD1 - annotation not available

Aeromonas salmonicida

exbD1 - annotation not available

Alcanivorax borkumensis

exbD1 - InterPro: Biopolymer transport protein ExbD/TolR; Specificity unclear

Alcanivorax dieselolei

exbD1 - annotation not available

Aliivibrio salmonicida

exbD1 - annotation not available

Arcobacter butzleri RM4018

exbD1 - Biopolymer transport protein ExbD; Pfam match to PF02472 ExbD, score 87.4, E-value 4.1E-023

Aromatoleum aromaticum

exbD1 - annotation not available

Azoarcus sp. BH72

exbD1 - Putative biopolymer transport protein ExbD. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton grandient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership

Bordetella avium

exbD1 - annotation not available

Bordetella trematum

exbD1 - annotation not available

Campylobacter coli 76339

exbD1 - annotation not available

Campylobacter fetus testudinum

exbD1 - Biopolymer transporter ExbD; Pfam match to PF02472.11 ExbD

Campylobacter jejuni NCTC11168

exbD1 - Biopolymer transport protein; Original (2000) note: Cj0180, exbD1, biopolymer transport protein, len: 136 aa; highly similar to e.g. EXBD_ECOLI biopolymer transport exbD protein (141 aa),fasta scores; opt: 356 z-score: 629.2 E(): 8.7e-28, 42.9% identity in 119 aa overlap. No Hp ortholog; Updated (2006) note: Pfam domain PF02472 Biopolymer transport protein ExbD/TolR identified within CDS. Also,one probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity scores. Thus, putative not adde [...]

Campylobacter lari

exbD1 - TonB system transport protein ExbD; Pfam match to PF02472.7 ExbD

Campylobacter sp. 1485E

exbD1 - TonB system transport protein ExbD; Pfam match to PF02472.11 ExbD

Cellvibrio japonicus

exbD1 - ExbD; Identified by match to protein family HMM PF02472

Chromobacterium violaceum

exbD1 - Biopolymer transport exbD transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0848

Collimonas fungivorans

exbD1 - annotation not available

Corallococcus coralloides

exbD1 - annotation not available

Cupriavidus metallidurans

exbD1 - annotation not available

Cupriavidus taiwanensis

exbD1 - BIOPOLYMER TRANSPORT PROTEIN; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter

Flavobacterium branchiophilum

exbD1 - 1.2 Transport/binding proteins and lipoproteins

Flavobacterium indicum

exbD1 - annotation not available

Flavobacterium psychrophilum

exbD1 - annotation not available

Gammaproteobacteria bacterium HdN1

exbD1 - Biopolymer transport protein ExbD/TolR; silverDB:HdN1F4420

Gluconacetobacter diazotrophicus

exbD1 - annotation not available

Herminiimonas arsenicoxydans

exbD1 - Biopolymer transport protein exbD1; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter

Janthinobacterium lividum

exbD1 - annotation not available

Janthinobacterium sp. HH01

exbD1 - annotation not available

Janthinobacterium sp. Marseille

exbD1 - annotation not available

Massilia sp. LC238

exbD1 - annotation not available

Nitrosomonas europaea

exbD1 - Biopolymer transport protein ExbD/TolR; InterPro IPR003400 COGs COG0848

Photobacterium profundum

EXBD1 - annotation not available

Pseudomonas protegens CHA0

exbD1 - annotation not available

Pseudomonas protegens Pf5

exbD1 - TonB system transport protein ExbD1; Identified by match to protein family HMM PF02472; match to protein family HMM TIGR02803

Pseudomonas pseudoalcaligenes CECT5344

exbD1 - Biopolymer transport protein

Pseudomonas stutzeri A1501

exbD1 - TonB system transport protein; Code: U; COG: COG0848

Pseudomonas syringae phaseolicola

exbD1 - TonB system transport protein ExbD1; Identified by match to protein family HMM PF02472

Ralstonia eutropha H16

exbD1 - Biopolymer transport protein; Intracellular trafficking and secretion

Ralstonia solanacearum GMI1000

exbD1 - Probable biopolymer transport transmembrane protein; Cell processes; transport of small molecules

Rhodobacter capsulatus

exbD1 - annotation not available

Rhodopseudomonas palustris CGA009

exbD1 - Biopolymer transport protein ExbD; InterPro IPR003400 COGs COG0848

Rhodospirillum centenum

exbD1 - Biopolymer transport exbD1 protein, putative; Identified by match to protein family HMM PF00529 match to protein family HMM TIGR01730

Riemerella anatipestifer

exbD1 - Flagellar motor protein MotA; Biopolymer transport protein

Shewanella violacea

exbD1 - annotation not available

Solemya velum

exbD1 - annotation not available

Stenotrophomonas maltophilia K279a

exbD1 - Putative biopolymer transport ExbD1 protein; Similarity:fasta; with=UniProt:O34259 (EMBL:AE012094); Xanthomonas campestris pv. campestris; exbD1; Biopolymer transport exbD1 protein.; length=140; id 89.362%; ungapped id 90.000%; E()=8.1e-45; 141 aa overlap; query 1-141; subject 1-140; similarity:fasta; with=UniProt:Q4V0R9 (EMBL:CP000050); Xanthomonas campestris pv. campestris (strain 8004).; Biopolymer transport ExbD1 protein.; length=140; id 89.362%; ungapped id 90.000%; E()=8.1e-45; 141 aa overlap; query 1-141; subject 1-140

Vibrio anguillarum

exbD1 - TolR; User locus_tag: VANGcI1435

Vibrio cholerae O1

exbD1 - Biopolymer transport protein exbD1; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates

Vibrio cholerae O395

exbD1 - annotation not available

Vibrio fischeri

exbD1 - annotation not available

Xanthomonas albilineans

exbD1 - Probable biopolymer transport exbd transmembrane protein; Transport go:0005215 go:0006810; tonb family of auxiliary proteins for energization of omr-mediated transport

Xanthomonas axonopodis citri

exbD1 - Biopolymer transport ExbD1 protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark

Xanthomonas campestris campestris

exbD1 - Biopolymer transport protein exbD1; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates

Xanthomonas campestris vesicatoria

exbD1 - annotation not available

Xanthomonas fuscans

exbD1 - annotation not available

Xanthomonas hortorum

exbD1 - annotation not available

Pseudomonas aeruginosa

exbD - annotation not available [a.k.a. AO896_16880, exbD_6, AOY09_06300, exbD1]

Rhodospirillum photometricum

CCG08385.1 - annotation not available [a.k.a. exbD1, RSPPHO_01759, rpm:RSPPHO_01759]

Rhodospirillum photometricum

CCG08386.1 - annotation not available [a.k.a. exbD1, RSPPHO_01760, WP_014415022.1]

Aeromonas hydrophila ATCC7966

AHA_1985 - Biopolymer transport exbD1 protein; Identified by match to protein family HMM PF02472 [a.k.a. ABK39801.1, biopolymer transport exbD1 protein, GI:117562853]

Azoarcus sp. BH72

exbD3 - Probable fiopolymer transport protein ExbD. Homology to exbD1 of X. campestris of 43%. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; High confidence in function and specificity [a.k.a. azo0613, CAL93230.1, A1K325]

Azoarcus sp. BH72

exbD6 - Putative biopolymer transport protein. Homology to exbD1 of X. campestris of 31%. ExbD is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. InterPro: Biopolymer transport protein ExbD/TolR Pfam: Biopolymer transport protein ExbD/TolR no signal peptide probable 1 TMH; Family membership [a.k.a. azo2332, CAL94949.1, IPR003400]

Burkholderia pseudomallei K96243

BPSL2939 - Putative transport-related membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 biopolymer transport ExbD protein or b3005 or c3740 or z4358 or ecs3889 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 2.6e-06, 33.87% id in 124 aa, and to Xanthomonas campestris biopolymer transport ExbD1 protein or xcc0010 SWALL:EXB1_XANCP (SWALL:O34259) (140 aa) fasta scores: E(): 4.3e-11, 44.11% id in 136 aa. Note: This CDS is longer in its -terminal region than most of its database matches [a.k.a. CAH36949.1, IPR003400, UniProtKB/TrEMBL:Q63QT5]

Burkholderia pseudomallei K96243

BPSS0366 - Similar to Xanthomonas campestris biopolymer transport protein ExbD1 or xcc0010 SWALL:EXB1_XANCP (SWALL:O34259) (140 aa) fasta scores: E(): 4.8e-18, 43.18% id in 132 aa, and to Ralstonia solanacearum probable biopolymer transport transmembrane protein rsc1965 or rs03539 SWALL:Q8XXZ8 (EMBL:AL646067) (137 aa) fasta scores: E(): 4.7e-30, 61.76% id in 136 aa [a.k.a. CAH37814.1, IPR003400, GOA:Q63ND3]

Campylobacter jejuni NCTC11168

tonB1 - TonB transport protein; Original (2000) note: Cj0181, tonB1, possible tonB transport protein, len 248 aa; similar to e.g. TONB_PSEPU tonB protein (243 aa), fasta scores; opt: 220 z-score: 317.2 E(): 2.1e-10, 29.5% identity in 149 aa overlap. No Hp match; Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Characterised within Pseudomonas putida with marginal identity score. Putative not added. Cj0179-Cj0181 (exbB1, exbD1, tonB1) function as an outer-membrane energy transducer system. Functional classification - Transport/binding proteins - Other; PMID:7642501 [...] [a.k.a. Cj0181, CAL34350.1, YP_002343639.1]

Chlamydophila abortus

exbD - Similar to Escherichia coli biopolymer transport ExbD protein SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 0.00012, 26.35% id in 129 aa, and to Chlamydia trachomatis biopolymer transport protein ExbD or ct597 SWALL:O84602 (EMBL:AE001330) (135 aa) fasta scores: E(): 2.3e-33, 68.14% id in 135 aa, and to Xanthomonas campestris biopolymer transport ExbD1 protein or Xcc0010 SWALL:EXB1_XANCP (SWALL:O34259) (140 aa) fasta scores: E(): 4.3e-06, 32.54% id in 126 aa [a.k.a. CAB942, CAH64381.1, IPR003400]

Dinoroseobacter shibae

exbD - PFAM: Biopolymer transport protein ExbD/TolR; low swissprot hit to Biopolymer transport protein exbD1 from Vibrio cholerae; low gb hit to Biopolymer transport protein ExbD/TolR [alpha proteobacterium BAL199] [a.k.a. Dshi_0568, ABV92314.1, GI:157910881]

Hyphomonas adhaerens

HAD_17216 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. KCZ82588.1, TonB system transport protein ExbD1, GI:630936222]

Oceanimonas sp. GK1

GU3_13835 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. AEY02520.1, H2FTG2, TonB system transport protein ExbD1]

Pectobacterium atrosepticum

ECA4298 - Similar to Neisseria meningitidis biopolymer transport ExbD protein ExbD or nma1983 or nmb1728 SWALL:EXBD_NEIMA (SWALL:P95376) (144 aa) fasta scores: E(): 3.9e-13, 38.57% id in 140 aa, and to Pseudomonas aeruginosa ExbD or ExbD1 or pa0199 SWALL:Q9RMT1 (EMBL:AF190125) (133 aa) fasta scores: E(): 1.8e-24, 55.63% id in 133 aa [a.k.a. CAG77195.1, eca:ECA4298, IPR003400]

Rhodopirellula baltica

RB10702 - Similar to biopolymer transport exbD2 protein; PMID: 9781885 best DB hits: BLAST: pir:E82726; conserved hypothetical protein XF1080 [imported] -; E=0.007 swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.043 pir:B82858; biopolymer transport ExbD1 protein XF0011 [imported] -; E=0.16 COG: XF1080; COG0848 Biopolymer transport protein; E=7e-04 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=5.3e-06 [a.k.a. NP_869567.1, GeneID:1793595, Biopolymer transport exbD2 protein]

Ricinus communis

XP_002534643.1 - Biopolymer transport exbD1 protein, putative; Encoded by transcript RCOM_0032000A [a.k.a. RCOM_0032000, XP_002534643.1, rcu:8287985]

Shewanella putrefaciens

ABP74692.1 - PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO3672 TonB system transport protein ExbD1 [a.k.a. Sputcn32_0963, IPR003400, A4Y409]

Shewanella sp. ANA3

ABK49462.1 - PFAM: Biopolymer transport protein ExbD/TolR; KEGG: son:SO3672 TonB system transport protein ExbD1 [a.k.a. Shewana3_3238, IPR003400, WP_011718051.1]

Stenotrophomonas maltophilia R5513

Smal_0010 - PFAM: Biopolymer transport protein ExbD/TolR; KEGG: xcb:XC_0010 biopolymer transport ExbD1 protein [a.k.a. ACF49715.1, IPR003400, GI:194346592]

Vibrio alginolyticus 40B

VMC_16010 - TonB system transport protein ExbD1; Identified by sequence similarity; putative [a.k.a. EEZ83472.1, TonB system transport protein ExbD1, GI:269829228]

Vibrio brasiliensis

EGA64650.1 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. VIBR0546_07257, TonB system transport protein ExbD1, GI:323311498]

Vibrio nigripulchritudo

CCO48768.1 - TonB system transport protein ExbD1; Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter [a.k.a. VIBNI_A2349, VIBNISOn1_600077, TonB system transport protein ExbD1]

Vibrio scophthalmi

EGU35397.1 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. VIS19158_19327, TonB system transport protein ExbD1, EGU35397]

Vibrio sinaloensis

EGA71171.1 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. VISI1226_06603, TonB system transport protein ExbD1, E8M4D3]

Vibrio sp. N418

EGU29463.1 - TonB system transport protein ExbD1; COG0848 Biopolymer transport protein [a.k.a. VIBRN418_14616, TonB system transport protein ExbD1, EGU29463]

Xylella fastidiosa 9a5c

XF_0011 - Biopolymer transport ExbD1 protein; Similar to SP|O34259 (percent identity: 78 %/query alignment coverage: 100.0 %/subject alignment coverage: 100.0 %); identified by sequence similarity; putative; ORF located using Glimmer/RBSfinder [a.k.a. AAF82824.1, Q9PHD3, Q9PHD3_XYLFA]

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