Organism Overview: Dinoroseobacter shibae


 
gltD protein networkhttps://string-db.org/network/398580.Dshi_0001Glutamate synthase, small subunit; NADPH-dependent glutamate synthase beta chain and related oxidoreductases, TIGRFAM: glutamate synthase, small subunit PFAM: FAD-dependent pyridine nucleotide-di [...]
gltB protein networkhttps://string-db.org/network/398580.Dshi_0002Glutamate synthase; PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase KEGG: sit:TM1040_2823 g [...]
Dshi_0004 protein networkhttps://string-db.org/network/398580.Dshi_0004PFAM: conserved hypothetical protein KEGG: sil:SPO3342 decarboxylase family protein, Homologous Superfamily (CATH Code: 3.40.50.80), Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) m [...]
Dshi_0005 protein networkhttps://string-db.org/network/398580.Dshi_0005Hypothetical protein; interPro: short signalpeptide N-terminal, bad swissprot hit to Sterol 3-beta-glucosyltransferase from Candida albicans and bad Ref NP hit to 4-alpha-glucanotransferase from [...]
dapD protein networkhttps://string-db.org/network/398580.Dshi_0006KEGG: sit:TM1040_3009 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase PFAM: transferase hexapeptide [...]
csp2 protein networkhttps://string-db.org/network/398580.Dshi_0009PFAM: Cold-shock protein DNA-binding SMART: Cold shock protein KEGG: rde:RD1_1402 cold shock protein CspA-related protein, putative.
Dshi_0010 protein networkhttps://string-db.org/network/398580.Dshi_0010PFAM: protein of unknown function DUF305 KEGG: psa:PST_3374 hypothetical protein, conserved in bacteria.
Dshi_0011 protein networkhttps://string-db.org/network/398580.Dshi_0011KEGG: rsq:Rsph17025_0047 hypothetical protein, bad swissprot hit to Multiple PDZ domain protein from rattus norvegicus involved in cell junction/cell projection; Immunoglobulin V-Type, subgroup d [...]
dapE1 protein networkhttps://string-db.org/network/398580.Dshi_0012Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in [...]
elaA protein networkhttps://string-db.org/network/398580.Dshi_0013PFAM: GCN5-related N-acetyltransferase KEGG: rsh:Rsph17029_2788 GCN5-related N-acetyltransferase.
Dshi_0014 protein networkhttps://string-db.org/network/398580.Dshi_0014KEGG: sil:SPO3331 hypothetical protein, Uncharacterized protein conserved in bacteria COG3222, bad swissprot hit to Carboxylesterase bioH (Biotin synthesis protein bioH) from Escherichia coli, Al [...]
rnr protein networkhttps://string-db.org/network/398580.Dshi_0015Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
mltB2 protein networkhttps://string-db.org/network/398580.Dshi_0016TIGRFAM: lytic murein transglycosylase PFAM: Peptidoglycan-binding domain 1 protein KEGG: rde:RD1_0181 transglycosylase, putative, good sw hit to Membrane-bound lytic murein transglycosylase B pr [...]
Dshi_0017 protein networkhttps://string-db.org/network/398580.Dshi_0017KEGG: jan:Jann_0593 hypothetical protein, one single bad swissprot hit to ATP synthase protein 8 (ATPase subunit 8) from mitochondrion Artemia franciscana, short signalpeptide and transmembrane d [...]
Dshi_0018 protein networkhttps://string-db.org/network/398580.Dshi_0018PFAM: multicopper oxidase type 2 KEGG: hch:HCH_03584 putative multicopper oxidases, diverse cupredoxin and multicopper oxidase 1-3 domains, bad swissprot hit to Blue copper oxidase cueO precursor [...]
Dshi_0019 protein networkhttps://string-db.org/network/398580.Dshi_0019TIGRFAM: small GTP-binding protein; GTP-binding protein TypA PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein KEGG: rde:RD1_27 [...]
Dshi_0020 protein networkhttps://string-db.org/network/398580.Dshi_0020Putative transcriptional regulator; KEGG: sil:SPO3454 hypothetical protein, no significant swissprot hit, next good Ref YP hit to putative transcriptional regulator, CadC from Silicibacter sp. TM [...]
Dshi_0021 protein networkhttps://string-db.org/network/398580.Dshi_0021KEGG: rsp:RSP_6002 hypothetical protein, one single transmembrane domain.
Dshi_0022 protein networkhttps://string-db.org/network/398580.Dshi_0022Hypothetical protein; No swissprot hit, next ref ZP hit to hypothetical protein RB2150_13021 from Rhodobacterales bacterium HTCC2150, short signalpeptide and two transmembrane regions, NO hit to [...]
rnhB protein networkhttps://string-db.org/network/398580.Dshi_0023Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
dam protein networkhttps://string-db.org/network/398580.Dshi_0024Adenine-specific methyltransferase; PFAM: DNA methylase N-4/N-6 domain protein KEGG: rsq:Rsph17025_0066 DNA methylase N-4/N-6 domain protein, high swissprot hit to Modification methylase CcrMI (A [...]
chrR2 protein networkhttps://string-db.org/network/398580.Dshi_0025Transcriptional activator anti-ECFsigma factor; KEGG: abo:ABO_0664 hypothetical protein, Cupin, RmlC-type domain, best swissprot hit to Transcriptional activator chrR from Rhodobacter sphaeroides [...]
Dshi_0026 protein networkhttps://string-db.org/network/398580.Dshi_0026KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase, best swissprot hit to Flavin reductase (FR) (NADPH-dependent diaphorase) from Mus musculus.
alkB1 protein networkhttps://string-db.org/network/398580.Dshi_0027Alkane 1-monooxygenase; PFAM: fatty acid desaturase KEGG: sit:TM1040_2646 alkane-1 monooxygenase, good swissprot hit to Alkane 1-monooxygenase (Alkane omega-hydroxylase) from Pseudomonas oleovora [...]
mutY protein networkhttps://string-db.org/network/398580.Dshi_0028A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
Dshi_0029 protein networkhttps://string-db.org/network/398580.Dshi_0029PFAM: protein of unknown function DUF1159 KEGG: sit:TM1040_2644 protein of unknown function DUF1159.
dsbA1 protein networkhttps://string-db.org/network/398580.Dshi_0030KEGG: rde:RD1_0295 thiol-disulfide oxidoreductase D, putative, swissprot hit to Putative protein-disulfide oxidoreductase RBE_1288 precursor from Rickettsia bellii RML369-C, conserved domains: ds [...]
lpxK protein networkhttps://string-db.org/network/398580.Dshi_0031Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis [...]
kdtA protein networkhttps://string-db.org/network/398580.Dshi_0032three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CM [...]
Dshi_0033 protein networkhttps://string-db.org/network/398580.Dshi_0033PFAM: protein of unknown function DUF343 KEGG: sit:TM1040_0056 protein of unknown function DUF343, DUF343 domain: Trm112p-like protein, The function of this family is uncertain. The bacterial mem [...]
Dshi_0034 protein networkhttps://string-db.org/network/398580.Dshi_0034ATP-dependent protease La (LON) domain protein; PFAM: peptidase S16 lon domain protein KEGG: rsq:Rsph17025_2895 peptidase S16, lon domain protein, swissprot hit to ATP-dependent protease La 2 fro [...]
trxA2 protein networkhttps://string-db.org/network/398580.Dshi_0035PFAM: Thioredoxin domain KEGG: rsp:RSP_1489 protein containing thioredoxin domain, swissprot hit to Thioredoxin (TRX) from Pasteurella multocida.
xthA protein networkhttps://string-db.org/network/398580.Dshi_0036TIGRFAM: exodeoxyribonuclease III Xth PFAM: Endonuclease/exonuclease/phosphatase KEGG: sit:TM1040_0053 exodeoxyribonuclease III, best swissprot hit to Exodeoxyribonuclease III (Exonuclease III) f [...]
Dshi_0038 protein networkhttps://string-db.org/network/398580.Dshi_0038PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: jan:Jann_0417 two component transcriptional regulator, winged helix family, Response regulators consisting of a C [...]
ribA protein networkhttps://string-db.org/network/398580.Dshi_0039GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II famil [...]
Dshi_0040 protein networkhttps://string-db.org/network/398580.Dshi_0040PFAM: protein of unknown function DUF1330 KEGG: sit:TM1040_1707 protein of unknown function DUF1330, no significant swissprot hit, best ref ZP hit to hypothetical protein OM2255_07195 from alpha [...]
Dshi_0041 protein networkhttps://string-db.org/network/398580.Dshi_0041KEGG: rde:RD1_0044 hypothetical protein, no significant swissprot hit, conserved domain found in several roseobacter function unknown.
Dshi_0042 protein networkhttps://string-db.org/network/398580.Dshi_0042Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
Dshi_0043 protein networkhttps://string-db.org/network/398580.Dshi_0043Porin; Swissprot hit to porin from Rhodobacter capsulatus and high ref ZP hit to putative porin from D. shibae DshiDRAFT_2133 which doesnt exist in the finished sequence and to outer membrane por [...]
Dshi_0044 protein networkhttps://string-db.org/network/398580.Dshi_0044KEGG: rsq:Rsph17025_3134 hypothetical protein.
Dshi_0045 protein networkhttps://string-db.org/network/398580.Dshi_0045Bad BLAST hits to hypothetical proteins, no significant swissprot hit, no domains detected by TIGRfam (no UspA domain).
Dshi_0046 protein networkhttps://string-db.org/network/398580.Dshi_0046Hypothetical protein; No Interpro hits reported, unsure, bad GC frame plot, bad ref ZP hits to hypothetical protein ROS217_08770 from Roseovarius sp. 217.
Dshi_0047 protein networkhttps://string-db.org/network/398580.Dshi_0047Hypothetical protein; No Interpro hits reported, unsure, bad GC frame plot, bad ref XP hits to hypothetical protein MGG_12456 from Magnaporthe grisea 70-15 (Fungi).
Dshi_0048 protein networkhttps://string-db.org/network/398580.Dshi_0048KEGG: rpc:RPC_0725 putative transposase, good ref ZP hit to possible transposase from Roseovarius sp. 217, InterPro:several Zinc finger domains (DNA binding?).
Dshi_0049 protein networkhttps://string-db.org/network/398580.Dshi_0049KEGG: har:HEAR2212 hypothetical protein, no InterPro hit, no good swissprot hit, Ref ZP hit to hypothetical protein ROS217_08790 fromRoseovarius sp. 217, next Ref ZP hit to GMP synthase, PP-ATPas [...]
Dshi_0050 protein networkhttps://string-db.org/network/398580.Dshi_0050PFAM: protein of unknown function DUF955 KEGG: mag:amb3753 predicted Zn peptidase, no significant swissprot hit, good ref Yp hit to Predicted Zn peptidase from Magnetospirillum magneticum AMB-1, [...]
Dshi_0051 protein networkhttps://string-db.org/network/398580.Dshi_0051Hypothetical protein; No significant BLAST hits, short signal peptide and two transmembrane regions, bad GC frame plot.
Dshi_0052 protein networkhttps://string-db.org/network/398580.Dshi_0052Hypothetical protein; No hits reported for InterPro Scan, BLAST hits similar to several hypothetical proteins in Roseobacter strains, bad GC frame plot.
Dshi_0053 protein networkhttps://string-db.org/network/398580.Dshi_0053PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sil:SPO3436 hypothetical protein, best ref ZP hit to hypothetical protein ISM_02290 from Roseovarius [...]
gst2 protein networkhttps://string-db.org/network/398580.Dshi_0054PFAM: Glutathione S-transferase domain KEGG: pde:Pden_2769 glutathione S-transferase, N-terminal domain and C-terminal domain; Thioredoxin fold.
holA protein networkhttps://string-db.org/network/398580.Dshi_0055KEGG: sit:TM1040_0043 DNA polymerase III, delta subunit.
Dshi_0056 protein networkhttps://string-db.org/network/398580.Dshi_0056KEGG: rsq:Rsph17025_3136 hypothetical protein, best ref ZP hit to lipoprotein, putative from Sulfitobacter sp. NAS-14.1, no significant InterPro Scan hits.
leuS protein networkhttps://string-db.org/network/398580.Dshi_0057TIGRFAM: leucyl-tRNA synthetase KEGG: sil:SPO3432 leucyl-tRNA synthetase; tRNA synthetases class I (I, L, M and V); Belongs to the class-I aminoacyl-tRNA synthetase family.
lolA protein networkhttps://string-db.org/network/398580.Dshi_0058Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue [...]
ftsK protein networkhttps://string-db.org/network/398580.Dshi_0059DNA translocase; PFAM: cell divisionFtsK/SpoIIIE KEGG: rde:RD1_0033 cell division protein FtsK; very good swissprot hit to DNA translocase ftsK from Agrobacterium tumefaciens str. C58.
Dshi_0060 protein networkhttps://string-db.org/network/398580.Dshi_0060PFAM: aminotransferase class I and II KEGG: sil:SPO3417 aminotransferase, classes I and II; swissprot hit to Putative aminotransferase aatC from Sinorhizobium meliloti.
Dshi_0061 protein networkhttps://string-db.org/network/398580.Dshi_0061PFAM: Amidase KEGG: rsq:Rsph17025_2898 amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; best swissprot hit to Glutamyl-tRNA(Gln) amidotransferase subunit [...]
ubiH protein networkhttps://string-db.org/network/398580.Dshi_0062TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family PFAM: monooxygenase FAD-binding KEGG: sil:SPO3419 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyp [...]
suhB2 protein networkhttps://string-db.org/network/398580.Dshi_0063PFAM: inositol monophosphatase KEGG: sil:SPO3443 inositol monophosphatase family protein; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; best [...]
pmbA protein networkhttps://string-db.org/network/398580.Dshi_0064PFAM: peptidase U62 modulator of DNA gyrase KEGG: sit:TM1040_2639 peptidase U62, modulator of DNA gyrase; COG0312 Predicted Zn-dependent proteases and their inactivated homologs; good swissprot h [...]
Dshi_0065 protein networkhttps://string-db.org/network/398580.Dshi_0065KEGG: sil:SPO3441 hypothetical protein, no swissprot hit, ref hits to several hypothetical proteins in roseobacter strains.
Dshi_0066 protein networkhttps://string-db.org/network/398580.Dshi_0066PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: sil:SPO3440 20-beta-hydroxysteroid dehydrogenase, putative, BLAST hits to several dehydrogenase proteins: swissprot hit to U [...]
caiD protein networkhttps://string-db.org/network/398580.Dshi_0067PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_2572 enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
Dshi_0068 protein networkhttps://string-db.org/network/398580.Dshi_0068Lipoprotein; KEGG: sil:SPO3414 lipoprotein, putative; Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-a [...]
Dshi_0069 protein networkhttps://string-db.org/network/398580.Dshi_0069PFAM: Auxin Efflux Carrier; COG0679 Predicted permeases, good Ref ZP hit to auxin efflux carrier family protein fromSulfitobacter sp. EE-36, swissprot hit to Uncharacterized transporter MTH_1382 [...]
yccV protein networkhttps://string-db.org/network/398580.Dshi_0070TIGRFAM: hemimethylated DNA binding protein PFAM: Hemimethylated DNA-binding region KEGG: sil:SPO3412 hypothetical protein, no swissprot.
ggt1 protein networkhttps://string-db.org/network/398580.Dshi_0071Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase KEGG: sit:TM1040_0064 gamma-glutamyltransferase, good swissprot hit to Gamma-glutamyltranspeptidase precursor from Bacillus subtilis.
rsbW protein networkhttps://string-db.org/network/398580.Dshi_0072KEGG: rde:RD1_0027 serine-protein kinase, putative; COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); ATP-binding region is related to ATPase domains of histidine kinase; Anti-sigma- [...]
Dshi_0073 protein networkhttps://string-db.org/network/398580.Dshi_0073Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor PFAM: Sulfate transporter/antisigma-factor antagonist STAS KEGG: rsq:Rsph17025_2906 anti-sigma-factor antagonist, SpoIIAA domain: The [...]
thlA protein networkhttps://string-db.org/network/398580.Dshi_0074KEGG: jan:Jann_4050 acetyl-CoA C-acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase PFAM: Thiolase; good swissprot hit to Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase) from Clostri [...]
Dshi_0076 protein networkhttps://string-db.org/network/398580.Dshi_0076Hypothetical protein; KEGG: rsq:Rsph17025_3561 IstB domain protein ATP-binding protein; no IPR domain, best Blast hit to Integrase, catalytic region from Rhodobacter sphaeroides ATCC 17025; bad G [...]
Dshi_0077 protein networkhttps://string-db.org/network/398580.Dshi_0077Hypothetical protein; No significant BLAST hits, unsure GC frame plot, IPR found small domain of intermediate filament from eukaryotes, integrated by Dshi_0076 possible integrase?.
Dshi_0078 protein networkhttps://string-db.org/network/398580.Dshi_0078Hypothetical protein; No significant BLAST hits, unsure GC frame plot, no InterPro Scan hits detected, but good RBS binding site AGGAT.
Dshi_0079 protein networkhttps://string-db.org/network/398580.Dshi_0079PFAM: lipid A biosynthesis acyltransferase KEGG: sil:SPO1058 acyltransferase, HtrB family.
Dshi_0080 protein networkhttps://string-db.org/network/398580.Dshi_0080PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_0131 protein of unknown function DUF6, transmembrane; good hits to putative transporter, RhaT family, DMT superfamily from Lokt [...]
imdh protein networkhttps://string-db.org/network/398580.Dshi_00813-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-met [...]
Dshi_0082 protein networkhttps://string-db.org/network/398580.Dshi_0082KEGG: rde:RD1_0227 hypothetical protein, small signalpeptide.
ipmi2 protein networkhttps://string-db.org/network/398580.Dshi_00833-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. Le [...]
Dshi_0084 protein networkhttps://string-db.org/network/398580.Dshi_0084KEGG: bja:blr2987 hypothetical protein, uncharacterized conserved protein function unknown, transmembrane regions, signalpeptide.
ipmi1 protein networkhttps://string-db.org/network/398580.Dshi_00853-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
Dshi_0086 protein networkhttps://string-db.org/network/398580.Dshi_0086PFAM: SOUL heme-binding protein KEGG: bra:BRADO5496 putative heme-binding protein, SOUL family, swissprot hit to Heme-binding-like protein At3g10130 chloroplast precursor from Arabidopsis thalian [...]
rsfS protein networkhttps://string-db.org/network/398580.Dshi_0087Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S r [...]
rlmH protein networkhttps://string-db.org/network/398580.Dshi_0088Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
ipgm protein networkhttps://string-db.org/network/398580.Dshi_0089Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
Dshi_0090 protein networkhttps://string-db.org/network/398580.Dshi_0090PFAM: peptidase M23B KEGG: rsh:Rsph17029_2592 peptidase M23B.
prc protein networkhttps://string-db.org/network/398580.Dshi_0091KEGG: rde:RD1_0333 carboxyl-terminal protease family protein, putative TIGRFAM: carboxyl-terminal protease PFAM: PDZ/DHR/GLGF domain protein; peptidase S41, high swissprot hit to Carboxy-terminal [...]
rppH protein networkhttps://string-db.org/network/398580.Dshi_0092NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulat [...]
Dshi_0093 protein networkhttps://string-db.org/network/398580.Dshi_0093Hypothetical protein; No significant BLAST hit, small signalpeptide, bad GC frame plot, Dshi_0100 putative transposase.
Dshi_0094 protein networkhttps://string-db.org/network/398580.Dshi_0094KEGG: rde:RD1_0345 hypothetical protein, domain of protease I prophage; no swissprot.
Dshi_0095 protein networkhttps://string-db.org/network/398580.Dshi_0095KEGG: rde:RD1_0344 hypothetical protein, no swissprot, no IPR Scan result, COG4397 Mu-like prophage major head subunit gpT.
Dshi_0096 protein networkhttps://string-db.org/network/398580.Dshi_0096Hypothetical protein; Unsure GC frame plot, no significant BLAST hits, no IPR Scan results.
Dshi_0097 protein networkhttps://string-db.org/network/398580.Dshi_0097KEGG: rde:RD1_0343 hypothetical protein, no swissprot, no IPR results, DUF1018 domain: This family consists of several bacterial and phage proteins of unknown function.
Dshi_0098 protein networkhttps://string-db.org/network/398580.Dshi_0098Hypothetical protein; No significant BLAST hit, unsure GC frame plot, no IPR scan result.
Dshi_0099 protein networkhttps://string-db.org/network/398580.Dshi_0099Hypothetical protein; KEGG: ecs:ECs4946 putative DNA transposition protein, bad BLAST hits, AAA ATPase domain (COG2842 Uncharacterized ATPase, putative transposase).
Dshi_0100 protein networkhttps://string-db.org/network/398580.Dshi_0100KEGG: rde:RD1_0339 transposase, putative; swissprot hit to Transposase from Enterobacteria phage Mu; pfam02914 Mu_transposase.
Dshi_0101 protein networkhttps://string-db.org/network/398580.Dshi_0101Hypothetical protein; Unsure GC frame plot, no significant BLAST hits, no IPR Scan result.
dnaE1 protein networkhttps://string-db.org/network/398580.Dshi_0102DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
adhI protein networkhttps://string-db.org/network/398580.Dshi_0103TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein KEGG: sil:S [...]
Dshi_0104 protein networkhttps://string-db.org/network/398580.Dshi_0104PFAM: GCN5-related N-acetyltransferase KEGG: rle:pRL110290 putative acetyltransferase, no significant swissprot, but middle Ref YP hit to putative acetyltransferase from Rhizobium leguminosarum b [...]
Dshi_0105 protein networkhttps://string-db.org/network/398580.Dshi_0105Conserved hypothetical protein; PFAM: protein of unknown function DUF88 KEGG: jan:Jann_0048 protein of unknown function DUF88; no swissprot.
Dshi_0106 protein networkhttps://string-db.org/network/398580.Dshi_0106PFAM: regulatory protein TetR KEGG: rsh:Rsph17029_2507 transcriptional regulator, TetR family; TetR family.
Dshi_0107 protein networkhttps://string-db.org/network/398580.Dshi_0107PFAM: Rubrerythrin; protein of unknown function DUF125 transmembrane KEGG: sil:SPO3842 hypothetical protein, may be Rubrerythrin, but Rub has a C-terminal domain homologous to rubredoxin PUBMED:1 [...]
Dshi_0108 protein networkhttps://string-db.org/network/398580.Dshi_0108KEGG: syw:SYNW1655 hypothetical protein, best ref ZP hit to Methyltransferase type 11 from Methylobacterium sp. 4-46, no IPR scan results.
Dshi_0109 protein networkhttps://string-db.org/network/398580.Dshi_0109PFAM: Auxin Efflux Carrier KEGG: jan:Jann_0051 auxin efflux carrier, best swissprot hit to Putative malonate transporter from Sinorhizobium meliloti (Rhizobium meliloti) and best ref YP hit to Au [...]
Dshi_0110 protein networkhttps://string-db.org/network/398580.Dshi_0110PFAM: protein of unknown function DUF188 KEGG: rde:RD1_0321 YaiI/YqxD family protein, putative; Belongs to the UPF0178 family.
Dshi_0111 protein networkhttps://string-db.org/network/398580.Dshi_0111Transmembrane transporter; PFAM: major facilitator superfamily MFS_1 KEGG: rde:RD1_0325 transmembrane transporter, major facilitator family, putative, COG2814 Arabinose efflux permease; major fac [...]
Dshi_0112 protein networkhttps://string-db.org/network/398580.Dshi_0112PFAM: AFG1-family ATPase KEGG: rde:RD1_0326 ATPase, AFG1 family protein.
ahpC protein networkhttps://string-db.org/network/398580.Dshi_0113Redoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidat [...]
Dshi_0114 protein networkhttps://string-db.org/network/398580.Dshi_0114PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sil:SPO3737 pyridine nucleotide-disulphide oxidoreductase family protein; also good swissprot hits to Rhodocoxin reductase [...]
Dshi_0115 protein networkhttps://string-db.org/network/398580.Dshi_0115TIGRFAM: putative methyltransferase PFAM: conserved hypothetical protein KEGG: sil:SPO3738 methyltransferase, putative.
Dshi_0116 protein networkhttps://string-db.org/network/398580.Dshi_0116PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: pol:Bpro_2121 TRAP dicarboxylate transporter-DctP subunit.
map protein networkhttps://string-db.org/network/398580.Dshi_0117Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and [...]
sfsA protein networkhttps://string-db.org/network/398580.Dshi_0118PFAM: sugar fermentation stimulation protein KEGG: jan:Jann_0284 sugar fermentation stimulation protein, good swissprot; Belongs to the SfsA family.
mogA protein networkhttps://string-db.org/network/398580.Dshi_0119Molybdenum cofactor biosynthesis protein MogA; PFAM: molybdopterin binding domain KEGG: rsh:Rsph17029_2583 molybdopterin binding domain COG1058 - Predicted nucleotide-utilizing enzyme related to [...]
Dshi_0120 protein networkhttps://string-db.org/network/398580.Dshi_0120PFAM: GCN5-related N-acetyltransferase KEGG: rsq:Rsph17025_2991 GCN5-related N-acetyltransferase.
Dshi_0121 protein networkhttps://string-db.org/network/398580.Dshi_0121Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration o [...]
Dshi_0122 protein networkhttps://string-db.org/network/398580.Dshi_0122PFAM: OmpA/MotB domain protein KEGG: rsh:Rsph17029_2585 OmpA/MotB domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
Dshi_0123 protein networkhttps://string-db.org/network/398580.Dshi_0123PFAM: regulatory protein LysR; LysR substrate-binding KEGG: sit:TM1040_2460 transcriptional regulator, LysR family, good RBS site AGGAT; LysR family.
Dshi_0124 protein networkhttps://string-db.org/network/398580.Dshi_0124TIGRFAM: intracellular protease, PfpI family PFAM: ThiJ/PfpI domain protein KEGG: jan:Jann_1867 peptidase C56, PfpI; PfpI family.
fadH protein networkhttps://string-db.org/network/398580.Dshi_0125PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sit:TM1040_2458 NADH:flavin oxidoreductase/NADH oxidase, high swissprot to 2,4-die [...]
Dshi_0126 protein networkhttps://string-db.org/network/398580.Dshi_0126KEGG: sit:TM1040_2681 hypothetical protein, bad BLAST hits, no IPR Scan results.
Dshi_0127 protein networkhttps://string-db.org/network/398580.Dshi_0127KEGG: sit:TM1040_2680 hypothetical protein; no swissprot, no IPR Scan results.
Dshi_0128 protein networkhttps://string-db.org/network/398580.Dshi_0128KEGG: jan:Jann_0063 hypothetical protein, no significant swissprot, middle Ref hit.
ilvD1 protein networkhttps://string-db.org/network/398580.Dshi_0129KEGG: rde:RD1_0332 dihydroxy-acid dehydratase TIGRFAM: dihydroxy-acid dehydratase PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Swissprot: high similarity to dihydroxyacid dehydratase [...]
abi protein networkhttps://string-db.org/network/398580.Dshi_0130PFAM: Abortive infection protein KEGG: jan:Jann_0061 abortive infection protein, no significant swissprot.
accD protein networkhttps://string-db.org/network/398580.Dshi_0131acetyl-CoA carboxylase; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2 [...]
folC protein networkhttps://string-db.org/network/398580.Dshi_0132Folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein KEGG: sil:SPO3818 FolC bifunctional pro [...]
Dshi_0133 protein networkhttps://string-db.org/network/398580.Dshi_0133KEGG: sil:SPO2586 type I secretion target repeat protein, middle Ref ZP hit, no swissprot, hedgehog domain: in eukaryotes involved in cell growth and differentiation.
pcd protein networkhttps://string-db.org/network/398580.Dshi_0134PFAM: transcriptional coactivator/pterin dehydratase KEGG: rde:RD1_0944 pterin-4-alpha-carbinolamine dehydratase.
Dshi_0135 protein networkhttps://string-db.org/network/398580.Dshi_0135PFAM: protein of unknown function DUF482 KEGG: sil:SPO3732 hypothetical protein, no swissprot.
ugpQ protein networkhttps://string-db.org/network/398580.Dshi_0136PFAM: glycerophosphoryl diester phosphodiesterase KEGG: jan:Jann_0436 glycerophosphoryl diester phosphodiesterase PRK: ugpQ.
Dshi_0137 protein networkhttps://string-db.org/network/398580.Dshi_0137PFAM: Endoribonuclease L-PSP COG0251-Putative translation initiation inhibitor, yjgF family.
hlyD protein networkhttps://string-db.org/network/398580.Dshi_0138TIGRFAM: type I secretion membrane fusion protein, HlyD family PFAM: secretion protein HlyD family protein KEGG: sil:SPO3729 type I secretion membrane fusion protein, HlyD family; also middle swi [...]
Dshi_0139 protein networkhttps://string-db.org/network/398580.Dshi_0139TIGRFAM: type I secretion system ATPase PFAM: ABC transporter related contains:pfam00005 pfam00664.
Dshi_0140 protein networkhttps://string-db.org/network/398580.Dshi_0140PFAM: VacJ family lipoprotein KEGG: rsp:RSP_0891 putative lipoprotein, middle swissprot to Lipoprotein vacJ precursor from Shigella flexneri.
ttg2D protein networkhttps://string-db.org/network/398580.Dshi_0141PFAM: toluene tolerance family protein KEGG: rde:RD1_0939 toluene tolerance family protein, putative; swissprot hit to Protein yrbC precursor from Escherichia coli K12 (ABC transporter related).
mrcB protein networkhttps://string-db.org/network/398580.Dshi_0142KEGG: rde:RD1_0938 penicillin-binding protein, 1A family TIGRFAM: penicillin-binding protein, 1A family PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family.
glnK protein networkhttps://string-db.org/network/398580.Dshi_0143PFAM: nitrogen regulatory protein P-II KEGG: jan:Jann_4056 nitrogen regulatory protein P-II (GlnB, GlnK), glnK-amtB-Operon (amtB: Dshi_1838); highly conserved gene cluster (e.g. E. coli, R. capsu [...]
amtB protein networkhttps://string-db.org/network/398580.Dshi_0144TIGRFAM: ammonium transporter PFAM: Rh family protein/ammonium transporter KEGG: sit:TM1040_2630 ammonium transporter, high swissprot to Putative ammonium transporter sll0108 from Synechocystis s [...]
Dshi_0145 protein networkhttps://string-db.org/network/398580.Dshi_0145PFAM: aminotransferase class I and II.
sseA protein networkhttps://string-db.org/network/398580.Dshi_01463-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein KEGG: rsh:Rsph17029_2544 3-mercaptopyruvate sulfurtransferase; both, high swissprot and Ref YP hits to 3-mercaptopyruvate sulf [...]
smpB protein networkhttps://string-db.org/network/398580.Dshi_0147SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tm [...]
Dshi_0148 protein networkhttps://string-db.org/network/398580.Dshi_0148PFAM: GCN5-related N-acetyltransferase KEGG: bur:Bcep18194_B2857 GCN5-related N-acetyltransferase, bad BLAST hits.
dapA protein networkhttps://string-db.org/network/398580.Dshi_0149Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
Dshi_0150 protein networkhttps://string-db.org/network/398580.Dshi_0150PFAM: Lytic transglycosylase catalytic KEGG: rsh:Rsph17029_2541 lytic transglycosylase, catalytic; swissprot to Putative soluble lytic murein transglycosylase precursor from Haemophilus influenza [...]
Dshi_0151 protein networkhttps://string-db.org/network/398580.Dshi_0151PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_0141 protein of unknown function DUF6, transmembrane, swissprot hit to S-adenosylmethionine uptake transporter from Rickettsia [...]
Dshi_0152 protein networkhttps://string-db.org/network/398580.Dshi_0152PFAM: protein of unknown function DUF752 KEGG: sil:SPO3553 hypothetical protein.
dao protein networkhttps://string-db.org/network/398580.Dshi_0153PFAM: FAD dependent oxidoreductase KEGG: sil:SPO3552 oxidoreductase, FAD-binding.
Dshi_0154 protein networkhttps://string-db.org/network/398580.Dshi_0154PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase KEGG: sit:TM1040_2447 NADPH-dependent FMN reductase; predicted flavoprotein COG0431.
lrgA protein networkhttps://string-db.org/network/398580.Dshi_0155PFAM: LrgA family protein; bad Ref ZP hit to hypothetical protein RAZWK3B_06232 from Roseobacter sp. AzwK-3b no significant swissprot hit.
lrgB protein networkhttps://string-db.org/network/398580.Dshi_0156PFAM: LrgB family protein KEGG: pde:Pden_2740 LrgB family protein; gene arrangement wtih Dshi_0155 putative LrgA protein.
cobA2 protein networkhttps://string-db.org/network/398580.Dshi_0157cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete [...]
cobN protein networkhttps://string-db.org/network/398580.Dshi_0158Cobaltochelatase; KEGG: bov:BOV_1269 cobaltochelatase, CobN subunit TIGRFAM: cobaltochelatase, CobN subunit PFAM: CobN/magnesium chelatase; swissprot: high similarity to aerobic cobaltochelatase [...]
Dshi_0159 protein networkhttps://string-db.org/network/398580.Dshi_0159Hypothetical protein; No significant BLAST hits, no IPR Scan result; unsure GC frame plot.
cobW protein networkhttps://string-db.org/network/398580.Dshi_0160TIGRFAM: cobalamin biosynthesis protein CobW PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein KEGG: bov:BOV_1270 cobalamin biosynthesis protein CobW, high swissprot [...]
cbtA protein networkhttps://string-db.org/network/398580.Dshi_0161TIGRFAM: cobalt transporter, subunit CbtA PFAM: Cobalt transporter subunit CbtA putative KEGG: sit:TM1040_2222 cobalt transporter subunit CbtA, putative, no swissprot, middle Ref hits.
cbtB protein networkhttps://string-db.org/network/398580.Dshi_0162KEGG: pde:Pden_2524 hypothetical protein, no swissprot, bad EDO hit to cobalt transporter, subunit CbtB from Methylobacterium populi BJ001, a single transmembrane domain and four times His at C-t [...]
smc protein networkhttps://string-db.org/network/398580.Dshi_0163Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
mltB1 protein networkhttps://string-db.org/network/398580.Dshi_0164TIGRFAM: lytic murein transglycosylase PFAM: Peptidoglycan-binding domain 1 protein KEGG: sil:SPO3226 hypothetical protein.
cobD protein networkhttps://string-db.org/network/398580.Dshi_0165Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
cobC protein networkhttps://string-db.org/network/398580.Dshi_0166Threonine-phosphate decarboxylase; PFAM: aminotransferase class I and II KEGG: sil:SPO3224 cobalamin biosynthetic protein CobC; gene arrangement with several genes upstream (Dshi_0157) to downstr [...]
Dshi_0167 protein networkhttps://string-db.org/network/398580.Dshi_0167PFAM: protein of unknown function DUF1636 KEGG: hne:HNE_2170 hypothetical protein; conserved domain COG5469: predicted metal-binding protein; middle Ref ZP hit to hypothetical protein ROS217_2206 [...]
Dshi_0168 protein networkhttps://string-db.org/network/398580.Dshi_0168KEGG: rde:RD1_1333 response regulator, putative; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
Dshi_0169 protein networkhttps://string-db.org/network/398580.Dshi_0169KEGG: jan:Jann_0368 putative glutathione S-transferase.
Dshi_0170 protein networkhttps://string-db.org/network/398580.Dshi_0170Hypothetical protein; No significant BLAST hits, bad GC frame plot, no conserved domains detected.
cbiX2 protein networkhttps://string-db.org/network/398580.Dshi_0171Sirohydrochlorin cobaltochelatase; PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein KEGG: sye:Syncc9902_0843 hypothetical protein; swissprot to Sirohydrochlorin cobaltochelatase (CbiXL) fr [...]
cobH protein networkhttps://string-db.org/network/398580.Dshi_0172PFAM: Precorrin-8X methylmutase CbiC/CobH KEGG: bvi:Bcep1808_1609 precorrin-8X methylmutase; alternative gene name: cbiC.
cobL protein networkhttps://string-db.org/network/398580.Dshi_0173Decarboxylating precorrin-6Y C(5,15)-methyltransferase; KEGG: ava:Ava_3558 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase TIGRFAM: precorrin-6y C5,15-methyltransferase (deca [...]
cobI protein networkhttps://string-db.org/network/398580.Dshi_0174TIGRFAM: precorrin-2 C20-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: mag:amb0297 precorrin-2 methylase; alternative gene name: cbiL; Belongs [...]
cbiG protein networkhttps://string-db.org/network/398580.Dshi_0175TIGRFAM: precorrin-3B C17-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein KEGG: mag:amb0298 precorr [...]
cobM protein networkhttps://string-db.org/network/398580.Dshi_0176TIGRFAM: precorrin-4 C11-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: mag:amb0514 precorrin-4 methylase, anaerobic equivalent cbiF.
Dshi_0177 protein networkhttps://string-db.org/network/398580.Dshi_0177KEGG: jan:Jann_0367 hypothetical protein, no significant swissprot, no IPR Scan results.
Dshi_0178 protein networkhttps://string-db.org/network/398580.Dshi_0178PFAM: aminotransferase class I and II KEGG: sit:TM1040_2581 aminotransferase, class I and II; middle swissprot to Putative aminotransferase B from Bacillus subtilis (patB).
def1 protein networkhttps://string-db.org/network/398580.Dshi_0179Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a [...]
def2 protein networkhttps://string-db.org/network/398580.Dshi_0180Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a [...]
fmt protein networkhttps://string-db.org/network/398580.Dshi_0181methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethi [...]
rnhA protein networkhttps://string-db.org/network/398580.Dshi_0182Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
Dshi_0183 protein networkhttps://string-db.org/network/398580.Dshi_0183PFAM: Methyltransferase type 11; Methyltransferase type 12 KEGG: sil:SPO3211 hypothetical protein.
Dshi_0184 protein networkhttps://string-db.org/network/398580.Dshi_0184KEGG: rde:RD1_1353 hypothetical protein.
cdsA2 protein networkhttps://string-db.org/network/398580.Dshi_0185PFAM: phosphatidate cytidylyltransferase KEGG: reu:Reut_B4016 phosphatidate cytidylyltransferase.
plsC protein networkhttps://string-db.org/network/398580.Dshi_0186PFAM: phospholipid/glycerol acyltransferase KEGG: reh:H16_A2089 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Dshi_0187 protein networkhttps://string-db.org/network/398580.Dshi_0187PFAM: Lysine exporter protein (LYSE/YGGA) KEGG: jan:Jann_0505 lysine exporter protein (LysE/YggA); COG1280 putative threonine efflux protein; Ref hit to Lysine exporter protein (LYSE/YGGA) from J [...]
lytB protein networkhttps://string-db.org/network/398580.Dshi_01884-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethyl [...]
Dshi_0189 protein networkhttps://string-db.org/network/398580.Dshi_0189PFAM: cytochrome c class I KEGG: rsh:Rsph17029_3996 cytochrome c, class I; COG2863 Cytochrome c553; just middle Ref hits to probable c-type cytochrome from Roseovarius sp. HTCC2601; good RBS site [...]
Dshi_0190 protein networkhttps://string-db.org/network/398580.Dshi_0190Uncharacterized membrane-associated protein; KEGG: pmy:Pmen_0684 membrane protein-like protein, middle Ref hits.
Dshi_0191 protein networkhttps://string-db.org/network/398580.Dshi_0191PFAM: protein of unknown function DUF88 KEGG: rsq:Rsph17025_2579 protein of unknown function DUF88.
hppk protein networkhttps://string-db.org/network/398580.Dshi_0192TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK KEGG: sil:SPO3205 2-amino-4-hydroxy-6-hydroxymethyldihyd [...]
rpoZ protein networkhttps://string-db.org/network/398580.Dshi_0193DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and al [...]
relA protein networkhttps://string-db.org/network/398580.Dshi_0194GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to chan [...]
Dshi_0195 protein networkhttps://string-db.org/network/398580.Dshi_0195KEGG: sil:SPO3202 hypothetical protein.
pdxJ protein networkhttps://string-db.org/network/398580.Dshi_0196Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amin [...]
Dshi_0197 protein networkhttps://string-db.org/network/398580.Dshi_0197KEGG: sit:TM1040_1321 hypothetical protein, no swissprot, no conserved domains.
acpS protein networkhttps://string-db.org/network/398580.Dshi_0198Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
lepB protein networkhttps://string-db.org/network/398580.Dshi_0199KEGG: rsq:Rsph17025_2572 signal peptidase I TIGRFAM: signal peptidase I PFAM: peptidase S24 and S26 domain protein; Belongs to the peptidase S26 family.
rnc protein networkhttps://string-db.org/network/398580.Dshi_0200Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some m [...]
era protein networkhttps://string-db.org/network/398580.Dshi_0201GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly als [...]
Dshi_0202 protein networkhttps://string-db.org/network/398580.Dshi_0202PFAM: protein of unknown function DUF1491 KEGG: sil:SPO0690 hypothetical protein.
recO protein networkhttps://string-db.org/network/398580.Dshi_0203DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
mmgC protein networkhttps://string-db.org/network/398580.Dshi_0204PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain KEGG: rde:RD1_1372 isobutyryl-CoA dehydrogenase.
Dshi_0205 protein networkhttps://string-db.org/network/398580.Dshi_0205PFAM: protein of unknown function DUF81 KEGG: sit:TM1040_2445 protein of unknown function DUF81; no significant swissprot.
Dshi_0206 protein networkhttps://string-db.org/network/398580.Dshi_0206KEGG: rde:RD1_1384 hypothetical protein, no significant swissprot, but conserved domains and good RBS site AGGAT.
ptsH protein networkhttps://string-db.org/network/398580.Dshi_0207Phosphotransferase system; TIGRFAM: phosphocarrier, HPr family PFAM: phosphocarrier HPr protein KEGG: sit:TM1040_2436 phosphotransferase system, HPr; phosphocarrier protein HPr.
ptsL protein networkhttps://string-db.org/network/398580.Dshi_0208PFAM: PTS system fructose subfamily IIA component KEGG: sil:SPO0714 PTS system IIA component, Man family; Man family protein.
Dshi_0209 protein networkhttps://string-db.org/network/398580.Dshi_0209Uncharacterized P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
hprK protein networkhttps://string-db.org/network/398580.Dshi_0210KEGG: sil:SPO0712 HPr serine kinase/phosphatase domain protein.
Dshi_0211 protein networkhttps://string-db.org/network/398580.Dshi_0211Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein KEGG: [...]
Dshi_0212 protein networkhttps://string-db.org/network/398580.Dshi_0212PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: sit:TM1040_2441 two component transcriptional regulator, winged helix family; winged helix family.
pckA protein networkhttps://string-db.org/network/398580.Dshi_0213Phosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucl [...]
hbdA protein networkhttps://string-db.org/network/398580.Dshi_0214PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding KEGG: sil:SPO0717 3-hydroxybutyryl-CoA dehydrogenase; high swissprot, good RBS site AGGAT.
Dshi_0215 protein networkhttps://string-db.org/network/398580.Dshi_0215KEGG: rde:RD1_1386 hypothetical protein; no significant swissprot; no IPR Scan results.
eftA protein networkhttps://string-db.org/network/398580.Dshi_0216PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit KEGG: rde:RD1_1387 electron transfer flavoprotein, alpha subunit, high swissprot.
eftB protein networkhttps://string-db.org/network/398580.Dshi_0217PFAM: Electron transfer flavoprotein alpha/beta-subunit KEGG: sil:SPO0720 electron transfer flavoprotein, beta subunit; high swissprot to Electron transfer flavoprotein subunit beta from Paracocc [...]
Dshi_0218 protein networkhttps://string-db.org/network/398580.Dshi_0218TIGRFAM: ATP--cobalamin adenosyltransferase PFAM: cobalamin adenosyltransferase KEGG: rde:RD1_1389 cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase fami [...]
Dshi_0219 protein networkhttps://string-db.org/network/398580.Dshi_0219KEGG: rsq:Rsph17025_2554 hypothetical protein; no significant swissprot; no conserved domains.
Dshi_0220 protein networkhttps://string-db.org/network/398580.Dshi_0220Putative oxidoreductase NAD-/NADP-dependent; PFAM: short-chain dehydrogenase/reductase SDR KEGG: rde:RD1_1391 oxidoreductase, putative.
parC protein networkhttps://string-db.org/network/398580.Dshi_0221DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circul [...]
Dshi_0222 protein networkhttps://string-db.org/network/398580.Dshi_0222KEGG: rsh:Rsph17029_0330 hypothetical protein, no significant swissprot.
tufA2 protein networkhttps://string-db.org/network/398580.Dshi_0223Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
Dshi_0224 protein networkhttps://string-db.org/network/398580.Dshi_0224Hypothetical protein; Bad Ref ZP hit to methyltransferase FkbM from Lyngbya sp. PCC 8106, no significant swissprot hit, conserved domain related to S-adenosyl-L-methionine-dependent methyltransfe [...]
Dshi_0225 protein networkhttps://string-db.org/network/398580.Dshi_0225KEGG: pde:Pden_3026 hypothetical protein, no swissprot, bad Ref hits, no conserved domains detected.
Dshi_0226 protein networkhttps://string-db.org/network/398580.Dshi_0226PFAM: protein of unknown function DUF1244 KEGG: sil:SPO3602 hypothetical protein; no significant swissprot hit.
Dshi_0227 protein networkhttps://string-db.org/network/398580.Dshi_0227PFAM: N-formylglutamate amidohydrolase KEGG: jan:Jann_0446 N-formylglutamate amidohydrolase; high Ref hit, but no significant swissprot hit.
pykA protein networkhttps://string-db.org/network/398580.Dshi_0228KEGG: rsp:RSP_1766 pyruvate kinase TIGRFAM: pyruvate kinase PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; high swissprot; Belongs to the pyruvate kinase family.
Dshi_0229 protein networkhttps://string-db.org/network/398580.Dshi_0229Hypothetical protein; Bad BLAST hits, best swissprot to Prolyl-tRNA synthetase from Haemophilus ducreyi, but very unsure; no conserved domains detected.
rpmI protein networkhttps://string-db.org/network/398580.Dshi_0230PFAM: ribosomal protein L35 KEGG: sil:SPO3599 ribosomal protein L35; high swissprot; Belongs to the bacterial ribosomal protein bL35 family.
rplT protein networkhttps://string-db.org/network/398580.Dshi_023150S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing func [...]
Dshi_0232 protein networkhttps://string-db.org/network/398580.Dshi_0232KEGG: sil:SPO2161 hypothetical protein; no significant swissprot, best Ref ZP hit to type I secretion target repeat protein from Roseovarius sp. 217; Hedgehog hintN domain detected.
Dshi_0233 protein networkhttps://string-db.org/network/398580.Dshi_0233PFAM: Citrate transporter KEGG: mgm:Mmc1_1728 citrate transporter; best Ref ZP hit to sulfur deprivation response regulator from Rhodobacterales bacterium HTCC2150, best swissprot toUncharacteriz [...]
Dshi_0234 protein networkhttps://string-db.org/network/398580.Dshi_0234KEGG: sil:SPO2161 hypothetical protein; no significant swissprot hit, Hedgehog/intein (Hint) domain, Ref ZP hit to type I secretion target repeat protein fromRoseovarius sp. 217; same like Dshi_2 [...]
pheS protein networkhttps://string-db.org/network/398580.Dshi_0235TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein KEGG: sil:SPO3594 phenylalanyl-tRNA synthetase [...]
Dshi_0236 protein networkhttps://string-db.org/network/398580.Dshi_0236Hypothetical protein; No swissprot, bad Ref ZP hit to phenylalanyl-tRNA synthetase beta subunit from Loktanella vestfoldensis SKA53, no conserved domains, just short signalpeptide and two transme [...]
pheT protein networkhttps://string-db.org/network/398580.Dshi_0237KEGG: rde:RD1_1013 phenylalanyl-tRNA synthetase, beta subunit TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
Dshi_0238 protein networkhttps://string-db.org/network/398580.Dshi_0238KEGG: sil:SPO3492 hypothetical protein; no swissprot; best Ref hit to succinate dehydrogenase iron-sulfur subunit from Roseobacter sp. AzwK-3b; no conserved domains.
nadX protein networkhttps://string-db.org/network/398580.Dshi_0239PFAM: aspartate dehydrogenase; homoserine dehydrogenase NAD-binding KEGG: mes:Meso_0824 aspartate dehydrogenase.
gst3 protein networkhttps://string-db.org/network/398580.Dshi_0240PFAM: Glutathione S-transferase domain KEGG: sil:SPO3494 glutathione S-transferase family protein; Belongs to the GST superfamily.
mscL protein networkhttps://string-db.org/network/398580.Dshi_0241Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes w [...]
Dshi_0242 protein networkhttps://string-db.org/network/398580.Dshi_0242Conserved hypothetical protein; PFAM: fatty acid hydroxylase KEGG: hne:HNE_0606 hypothetical protein; no significant swissprot hit, middle Ref YP hit to hypothetical protein HNE_0606 from Hyphomo [...]
Dshi_0243 protein networkhttps://string-db.org/network/398580.Dshi_0243Acyltransferase family protein; PFAM: acyltransferase 3 KEGG: hne:HNE_0605 acyltransferase family protein; bad swissprot to transferases, middle Ref YP hit to acyltransferase family protein from [...]
adh protein networkhttps://string-db.org/network/398580.Dshi_0244TIGRFAM: alanine dehydrogenase PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; alanine dehydrogenase/PNT domain protein KEGG: sit:TM1040_3628 alanine dehydrogenase; high swisspro [...]
asnC protein networkhttps://string-db.org/network/398580.Dshi_0245PFAM: regulatory protein AsnC/Lrp family KEGG: jan:Jann_0459 transcriptional regulator, AsnC family; AsnC family.
rpsU protein networkhttps://string-db.org/network/398580.Dshi_0246PFAM: ribosomal protein S21 KEGG: sil:SPO0229 ribosomal protein S21, bad Ref and swissprot hits to S21, bad GC frame plot; Belongs to the bacterial ribosomal protein bS21 family.
Dshi_0247 protein networkhttps://string-db.org/network/398580.Dshi_0247Conserved hypothetical protein; TIGRFAM: rpsU-divergently transcribed protein PFAM: COQ9 domain protein KEGG: rde:RD1_1038 hypothetical protein, best Ref hits to hypothetical proteins, middel swi [...]
Dshi_0248 protein networkhttps://string-db.org/network/398580.Dshi_0248TIGRFAM: Quinone oxidoreductase putative PIG3 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein KEGG: rsq:Rsph17025_2435 alcohol dehydrogenase, z [...]
Dshi_0249 protein networkhttps://string-db.org/network/398580.Dshi_0249Efflux transporter; Located downstream of an ORF representing the N-terminal part of RND subunit, putative sequencing error colocated with MFP subunit; pfam00873,; RND family, C-terminal part of [...]
Dshi_0250 protein networkhttps://string-db.org/network/398580.Dshi_0250Efflux transporter; Located upstream of an ORF representing the C-terminal part of RND subunit, putative sequencing error colocated with MFP subunit; pfam00873,; RND family, N-terminal part of RN [...]
Dshi_0251 protein networkhttps://string-db.org/network/398580.Dshi_0251Efflux transporter; Colocated with RND subunit; TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD; RND fa [...]
Dshi_0252 protein networkhttps://string-db.org/network/398580.Dshi_0252PFAM: regulatory protein TetR KEGG: jan:Jann_1309 transcriptional regulator, TetR family; TetR family.
Dshi_0253 protein networkhttps://string-db.org/network/398580.Dshi_0253Putative Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PFAM: AMP-dependent synthetase and ligase KEGG: sil:SPO0801 4-coumarate:CoA ligase; high swissprot to 4-coumarate--CoA ligase 1 fr [...]
Dshi_0254 protein networkhttps://string-db.org/network/398580.Dshi_0254PFAM: ribonuclease T2 KEGG: jan:Jann_3879 ribonuclease T2, unsure GC frame plot; Belongs to the RNase T2 family.
Dshi_0255 protein networkhttps://string-db.org/network/398580.Dshi_0255PFAM: protein of unknown function DUF1013 KEGG: rde:RD1_1043 hypothetical protein.
Dshi_0256 protein networkhttps://string-db.org/network/398580.Dshi_0256Hypothetical protein; No significant BLAST hits, no conserved domains.
Dshi_0257 protein networkhttps://string-db.org/network/398580.Dshi_0257PFAM: peptidase S8 and S53 subtilisin kexin sedolisin KEGG: sma:SAV5709 protease; good swissprot to Subtilisin E precursor from Bacillus subtilis.
secE protein networkhttps://string-db.org/network/398580.Dshi_0258Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
nusG protein networkhttps://string-db.org/network/398580.Dshi_0259NusG antitermination factor; Participates in transcription elongation, termination and antitermination.
rplK protein networkhttps://string-db.org/network/398580.Dshi_026050S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
rplA protein networkhttps://string-db.org/network/398580.Dshi_026150S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
Dshi_0262 protein networkhttps://string-db.org/network/398580.Dshi_0262KEGG: jan:Jann_2686 hypothetical protein; PEP-CTERM putative exosortase interaction domain; no significant swissprot, bad Ref hits.
fkbM protein networkhttps://string-db.org/network/398580.Dshi_0263TIGRFAM: methyltransferase FkbM family KEGG: jan:Jann_0310 methyltransferase FkbM; no significant swissprot.
Dshi_0264 protein networkhttps://string-db.org/network/398580.Dshi_0264Hypothetical protein; KEGG: jan:Jann_2490 hemolysin-type calcium-binding protein, middle Ref hits to hypothetical proteins, no swissprot, C-terminal beginning of unsure GC frame plot.
rplJ protein networkhttps://string-db.org/network/398580.Dshi_026550S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal prot [...]
rplL protein networkhttps://string-db.org/network/398580.Dshi_026650S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the ba [...]
Dshi_0267 protein networkhttps://string-db.org/network/398580.Dshi_0267Hypothetical protein; KEGG: pde:Pden_2598 PpiC-type peptidyl-prolyl cis-trans isomerase; bad BLAST hits, unsure GC frame plot, RBS site AGGAT.
rpoB protein networkhttps://string-db.org/network/398580.Dshi_0268DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
rpoC protein networkhttps://string-db.org/network/398580.Dshi_0269DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Dshi_0270 protein networkhttps://string-db.org/network/398580.Dshi_0270PFAM: protein of unknown function DUF6 transmembrane KEGG: sil:SPO3504 hypothetical protein; best Ref ZP hit to membrane protein, putative and bad swissprot to S-adenosylmethionine uptake transpo [...]
rpsL protein networkhttps://string-db.org/network/398580.Dshi_027130S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
rpsG protein networkhttps://string-db.org/network/398580.Dshi_027230S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit inte [...]
fusA protein networkhttps://string-db.org/network/398580.Dshi_0273Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) [...]
tufA1 protein networkhttps://string-db.org/network/398580.Dshi_0274TIGRFAM: translation elongation factor Tu; small GTP-binding protein PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein KEGG: s [...]
rpsJ protein networkhttps://string-db.org/network/398580.Dshi_027530S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
rplC protein networkhttps://string-db.org/network/398580.Dshi_027650S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
rplD protein networkhttps://string-db.org/network/398580.Dshi_027750S ribosomal protein L4/L1e; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It m [...]
rplW protein networkhttps://string-db.org/network/398580.Dshi_027850S Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main [...]
Dshi_0279 protein networkhttps://string-db.org/network/398580.Dshi_0279Hypothetical protein; No significant BLAST hits, no conserved domains, unsure GC frame plot.
Dshi_0280 protein networkhttps://string-db.org/network/398580.Dshi_0280KEGG: rde:RD1_1404 hypothetical protein, no significant swissprot hit, unsure GC frame plot.
Dshi_0281 protein networkhttps://string-db.org/network/398580.Dshi_0281KEGG: rde:RD1_3741 YHS domain protein, no swissprot; is located in the midst of a unsure GC frame plot region.
Dshi_0282 protein networkhttps://string-db.org/network/398580.Dshi_0282Hypothetical protein; No swissprot, bad Ref hits, no conserved domains, unsure GC frame plot.
Dshi_0283 protein networkhttps://string-db.org/network/398580.Dshi_0283Hypothetical protein; No swissprot, bad Ref hits, no conserved domains, unsure GC frame plot.
Dshi_0284 protein networkhttps://string-db.org/network/398580.Dshi_0284Putative outer membrane protein; KEGG: rsq:Rsph17025_2139 hypothetical protein; bad swissprot to 31 kDa outer-membrane immunogenic protein precursor from Brucella melitensis; middle Ref ZP hit to [...]
rplB protein networkhttps://string-db.org/network/398580.Dshi_028550S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It [...]
rpsS protein networkhttps://string-db.org/network/398580.Dshi_028630S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
rplV protein networkhttps://string-db.org/network/398580.Dshi_028750S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50 [...]
rpsC protein networkhttps://string-db.org/network/398580.Dshi_0288Ribosomal protein S3 RpsC; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
rplP protein networkhttps://string-db.org/network/398580.Dshi_028950S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
Dshi_0290 protein networkhttps://string-db.org/network/398580.Dshi_0290KEGG: sit:TM1040_3827 hypothetical protein; short signalpeptide and three transmembrane region; no swissprot, bad Ref hits to hypothetical proteins.
Dshi_0291 protein networkhttps://string-db.org/network/398580.Dshi_0291KEGG: rde:RD1_0735 hypothetical protein; bad Ref hits to hypothetical proteins; short signalpeptide and four transmembrane regions; no significant swissprot.
Dshi_0292 protein networkhttps://string-db.org/network/398580.Dshi_0292KEGG: sil:SPO0491 hypothetical protein; no swissprot; TIGR02466 conserved hypothetical protein.
rpmC protein networkhttps://string-db.org/network/398580.Dshi_0293PFAM: ribosomal protein L29 KEGG: jan:Jann_0599 ribosomal protein L29, low BLAST hits; Belongs to the universal ribosomal protein uL29 family.
rpsQ protein networkhttps://string-db.org/network/398580.Dshi_029430S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
rplN protein networkhttps://string-db.org/network/398580.Dshi_029550S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
rplX protein networkhttps://string-db.org/network/398580.Dshi_029650S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
rplE protein networkhttps://string-db.org/network/398580.Dshi_029750S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance [...]
rpsN protein networkhttps://string-db.org/network/398580.Dshi_029830S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the un [...]
rpsH protein networkhttps://string-db.org/network/398580.Dshi_029930S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to [...]
rplF protein networkhttps://string-db.org/network/398580.Dshi_030050S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the t [...]
rplR protein networkhttps://string-db.org/network/398580.Dshi_030150S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protubera [...]
rpsE protein networkhttps://string-db.org/network/398580.Dshi_030230S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
rpmD protein networkhttps://string-db.org/network/398580.Dshi_0303PFAM: ribosomal protein L30 KEGG: rde:RD1_1429 ribosomal protein L30; middle swissprot hit.
rplO protein networkhttps://string-db.org/network/398580.Dshi_030450S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
secY protein networkhttps://string-db.org/network/398580.Dshi_0305Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at [...]
adk2 protein networkhttps://string-db.org/network/398580.Dshi_0306Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolis [...]
rpsM protein networkhttps://string-db.org/network/398580.Dshi_030730S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 [...]
rpsK protein networkhttps://string-db.org/network/398580.Dshi_030830S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belon [...]
rpoA protein networkhttps://string-db.org/network/398580.Dshi_0309DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
rplQ protein networkhttps://string-db.org/network/398580.Dshi_0310PFAM: ribosomal protein L17 KEGG: rde:RD1_1438 ribosomal protein L17.
luxR1 protein networkhttps://string-db.org/network/398580.Dshi_0311PFAM: regulatory protein LuxR; Autoinducer-binding domain protein KEGG: pde:Pden_0786 response regulator receiver protein, Autoinducer binding domain pfam03472, HTH-LuxR domain pfam00196; LuxR fa [...]
luxI protein networkhttps://string-db.org/network/398580.Dshi_0312KEGG: pde:Pden_0787 N-acyl-L-homoserine lactone synthetase-like; Belongs to the autoinducer synthase family.
Dshi_0313 protein networkhttps://string-db.org/network/398580.Dshi_0313PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase KEGG: sil:SPO0515 ATPase, AAA family.
crcB protein networkhttps://string-db.org/network/398580.Dshi_0314Integral membrane protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
rluC protein networkhttps://string-db.org/network/398580.Dshi_0315Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
gph protein networkhttps://string-db.org/network/398580.Dshi_0316Phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase [...]
Dshi_0317 protein networkhttps://string-db.org/network/398580.Dshi_0317ATP12 chaperone protein; PFAM: ATP12 ATPase KEGG: rsp:RSP_1746 hypothetical protein; good Ref hits to ATP12 proteins, also middle swissprot hit toATP synthase mitochondrial F1 complex assembly fa [...]
bztA protein networkhttps://string-db.org/network/398580.Dshi_0318TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein SMART: extracellular solute-binding protein family 3 KEGG: sil:SPO0519 glutamate/glutamine/aspartate/asparagine ABC trans [...]
bztB protein networkhttps://string-db.org/network/398580.Dshi_0319TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1445 glutamate/glutamine/aspartate/aspar [...]
bztC protein networkhttps://string-db.org/network/398580.Dshi_0320TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_1446 amino acid ABC transporter, permeas [...]
bztD protein networkhttps://string-db.org/network/398580.Dshi_0321PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_0630 ABC transporter related, high swissprot hit to Glutamate/glutamine/aspartate/asparagine transport ATP-binding from Rhodobacter [...]
Dshi_0322 protein networkhttps://string-db.org/network/398580.Dshi_0322Putative phosphatase; PFAM: Phosphoglycerate mutase KEGG: sil:SPO0523 phosphoglycerate mutase family protein; COG2062 Phosphohistidine phosphatase SixA; best Ref hits to hypothetical proteins.
Dshi_0323 protein networkhttps://string-db.org/network/398580.Dshi_0323KEGG: rde:RD1_1449 hypothetical protein, no significant swissprot; no conserved domains detected.
argB protein networkhttps://string-db.org/network/398580.Dshi_0324Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
fabG3 protein networkhttps://string-db.org/network/398580.Dshi_0325PFAM: short-chain dehydrogenase/reductase SDR, good swissprot hit to Protein fixR from Bradyrhizobium japonicum, fabG NCBI domain, good Ref ZP hit toShort-chain alcohol dehydrogenase from Rhodoba [...]
engB protein networkhttps://string-db.org/network/398580.Dshi_0326GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase fam [...]
mosc protein networkhttps://string-db.org/network/398580.Dshi_0327PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein KEGG: sil:SPO0531 MOSC domain protein, swissprot hit to Molybdenum cofactor sulfurase from Mus musculus.
yidC protein networkhttps://string-db.org/network/398580.Dshi_0328Preprotein translocase subunit; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane prot [...]
ydaM protein networkhttps://string-db.org/network/398580.Dshi_0329TIGRFAM: diguanylate cyclase PFAM: GGDEF domain containing protein; EAL domain protein KEGG: sil:SPO0533 diguanylate cyclase, putative.
ydaO protein networkhttps://string-db.org/network/398580.Dshi_0330PP-loop ATPase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase ( [...]
Dshi_0331 protein networkhttps://string-db.org/network/398580.Dshi_0331Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
rnpA protein networkhttps://string-db.org/network/398580.Dshi_0332Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. [...]
rpmH protein networkhttps://string-db.org/network/398580.Dshi_0333PFAM: ribosomal protein L34, low swissprot and Ref ZP hit to 50S ribbosomal protein L34 from Silicibacter pomeroyi and Roseovarius nubinhibens ISM; Belongs to the bacterial ribosomal protein bL34 [...]
Dshi_0334 protein networkhttps://string-db.org/network/398580.Dshi_0334Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; low [...]
merA protein networkhttps://string-db.org/network/398580.Dshi_0335Putative mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; high swissprot to Mercuric [...]
Dshi_0336 protein networkhttps://string-db.org/network/398580.Dshi_0336PFAM: SNARE associated Golgi protein KEGG: rde:RD1_1463 mercuric reductase; the mercuric reductase MerA also comprises a SNARE associated Golgi protein motif, low swissprot hit to UPF0043 membran [...]
parA2 protein networkhttps://string-db.org/network/398580.Dshi_0337PFAM: ATPase MipZ KEGG: jan:Jann_0738 ATPases involved in chromosome partitioning-like;alternative gene name: mipZ.
Dshi_0338 protein networkhttps://string-db.org/network/398580.Dshi_0338Metallo-beta-lactamase family protein; PFAM: beta-lactamase domain protein KEGG: sil:SPO2170 metallo-beta-lactamase family protein; NCBI conserved domains:GloB, Zn-dependent hydrolases, including [...]
Dshi_0339 protein networkhttps://string-db.org/network/398580.Dshi_0339PFAM: protein of unknown function DUF849 KEGG: bur:Bcep18194_B0612 protein of unknown function DUF849, no significant swissprot.
rpmE protein networkhttps://string-db.org/network/398580.Dshi_034050S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
rplS protein networkhttps://string-db.org/network/398580.Dshi_034150S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
trmD protein networkhttps://string-db.org/network/398580.Dshi_0342tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
aph protein networkhttps://string-db.org/network/398580.Dshi_0343PFAM: aminoglycoside phosphotransferase KEGG: sit:TM1040_2610 hypothetical protein; no significant swissprot hit.
rimM protein networkhttps://string-db.org/network/398580.Dshi_034416S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19 [...]
Dshi_0346 protein networkhttps://string-db.org/network/398580.Dshi_0346PFAM: protein of unknown function DUF55 KEGG: mjl:Mjls_0045 protein of unknown function DUF55, bad swissprot hit to UPF0310 protein in gntR 5region fromBacillus licheniformis; bad Ref ZP hit to U [...]
bluB protein networkhttps://string-db.org/network/398580.Dshi_0347cob(II)yrinic acid a,c-diamide reductase; KEGG: sil:SPO3254 cobalamin biosynthesis protein BluB TIGRFAM: cob(II)yrinic acid a,c-diamide reductase PFAM: nitroreductase; good swissprot hit toPutati [...]
rpsP protein networkhttps://string-db.org/network/398580.Dshi_0348PFAM: ribosomal protein S16 KEGG: jan:Jann_0749 ribosomal protein S16; middle swissprot hit to 30S ribosomal protein S16 from Silicibacter pomeroyi; Belongs to the bacterial ribosomal protein bS1 [...]
pheA1 protein networkhttps://string-db.org/network/398580.Dshi_0349TIGRFAM: chorismate mutase PFAM: Chorismate mutase KEGG: rde:RD1_1312 chorismate mutase, putative; bad swissprot hit to T-protein [Includes: Chorismate mutase from Pantoea agglomerans.
Dshi_0350 protein networkhttps://string-db.org/network/398580.Dshi_0350KEGG: sit:TM1040_2605 hypothetical protein, no significant swissprot, good Ref YP hit to acetyltransferase, GNAT family from Roseobacter denitrificans OCh 114, NCBI conserved domains: rimL.
Dshi_0351 protein networkhttps://string-db.org/network/398580.Dshi_0351PFAM: GCN5-related N-acetyltransferase KEGG: jan:Jann_0752 GCN5-related N-acetyltransferase; middle Ref YP hit to GCN5-related N-acetyltransferase from Jannaschia sp. CCS1; NCBI conserved domains [...]
Dshi_0352 protein networkhttps://string-db.org/network/398580.Dshi_0352Acetyltransferase; Middle Ref ZP hit to acetyltransferase, GNAT family protein from Roseobacter sp. CCS2, no significant swissprot, NCBI domains: rimL; prosite51186 GCN5-related N-acetyltransfera [...]
ffh protein networkhttps://string-db.org/network/398580.Dshi_0353Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nasce [...]
azoR1 protein networkhttps://string-db.org/network/398580.Dshi_0354FMN-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its a [...]
lysR protein networkhttps://string-db.org/network/398580.Dshi_0355PFAM: regulatory protein LysR; LysR substrate-binding KEGG: sit:TM1040_2599 transcriptional regulator, LysR family; high Ref Yp hit to transcriptional regulator, LysR family from Silicibacter sp. [...]
Dshi_0356 protein networkhttps://string-db.org/network/398580.Dshi_0356PFAM: protein of unknown function DUF6 transmembrane KEGG: rde:RD1_1318 integral membrane protein, putative; no significant swissprot; high Ref Yp hit to integral membrane protein, putative from [...]
arsR protein networkhttps://string-db.org/network/398580.Dshi_0357PFAM: regulatory protein ArsR KEGG: sit:TM1040_2597 transcriptional regulator, ArsR family; middle Ref ZP hit to transcriptional regulator, ArsR family protein from Roseovarius sp. TM1035; bad sw [...]
purH protein networkhttps://string-db.org/network/398580.Dshi_0358KEGG: rde:RD1_0655 bifunctional purine biosynthesis protein PurH TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PFAM: MGS domain protein; AICARFT/IMPCHase b [...]
lspA protein networkhttps://string-db.org/network/398580.Dshi_0359Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
Dshi_0360 protein networkhttps://string-db.org/network/398580.Dshi_0360KEGG: rsq:Rsph17025_2930 hypothetical protein; no significant swissprot, no conserved domains.
pqqL2 protein networkhttps://string-db.org/network/398580.Dshi_0361PFAM: peptidase M16 domain protein; high swissprot to Uncharacterized zinc protease y4wA fromRhizobium sp. NGR234 and high Ref ZP hit to putative zinc protease from Rhodobacterales bacterium HTCC [...]
pqqL1 protein networkhttps://string-db.org/network/398580.Dshi_0362PFAM: peptidase M16 domain protein; good swissprot to Uncharacterized zinc protease-like protein y4wB from Rhizobium sp. NGR234 and Ref YP hit to peptidase M16 domain protein from Rhodobacter sph [...]
mutL protein networkhttps://string-db.org/network/398580.Dshi_0363DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchm [...]
rmuC protein networkhttps://string-db.org/network/398580.Dshi_0364PFAM: protein of unknown function DUF195; NCBI conserved domains: rmuC; swissprot to DNA recombination protein rmuC homolog from Xylella fastidiosa Temecula1 and high Ref ZP hit to RmuC domain pr [...]
chrR1 protein networkhttps://string-db.org/network/398580.Dshi_0365TIGRFAM: anti-sigma factor, putative, ChrR family PFAM: Cupin 2 conserved barrel domain protein; good swissprot to Transcriptional activator chrR from Rhodobacter sphaeroides 2.4.1 and good Ref Z [...]
rpoE2 protein networkhttps://string-db.org/network/398580.Dshi_0366TIGRFAM: RNA polymerase sigma-70 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; bad swissprot to RNA polymerase sigma factor sigW from Bacillu [...]
Dshi_0367 protein networkhttps://string-db.org/network/398580.Dshi_0367PFAM: amine oxidase; FAD dependent oxidoreductase, no significant swissprot, high ref ZP hit to Putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase from Sulfitob [...]
Dshi_0368 protein networkhttps://string-db.org/network/398580.Dshi_0368PFAM: protein of unknown function DUF1365; no significant swissprot, high Ref YP hit to protein of unknown function DUF1365 from Jannaschia sp. CCS1.
Dshi_0369 protein networkhttps://string-db.org/network/398580.Dshi_0369Putative sodium:galactoside symporter family protein; Bad swissprot hit to Uncharacterized symporter ynaJ from Bacillus subtilis and high Ref ZP hit to sodium:galactoside symporter family protein [...]
Dshi_0370 protein networkhttps://string-db.org/network/398580.Dshi_0370Conserved hypothetical protein; No significant swissprot, good Ref ZP hit to hypothetical protein RCCS2_10850 from Roseobacter sp. CCS2; no NCBI conserved domains.
Dshi_0371 protein networkhttps://string-db.org/network/398580.Dshi_0371PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; middle swissprot hit to Uncharacterized oxidoreductase MXAN_5909 from Myxococcus xanthus DK 1622, good Ref ZP hit to Short-chain [...]
Dshi_0372 protein networkhttps://string-db.org/network/398580.Dshi_0372Conserved hypothetical protein; No conserved domains detected, no significant swissprot, middle Ref ZP hit to hypothetical protein SKA53_12618 from Loktanella vestfoldensis SKA53.
fadD3 protein networkhttps://string-db.org/network/398580.Dshi_0373PFAM: AMP-dependent synthetase and ligase, good swissprot hit to Putative long-chain-fatty-acid--CoA ligase from Haemophilus influenzae and high Ref ZP hit to AMP-binding enzyme from Rhodobactera [...]
Dshi_0374 protein networkhttps://string-db.org/network/398580.Dshi_0374Hypothetical protein; No significant BLAST hits, no conserved domains detected; normal GC frame plot.
livG protein networkhttps://string-db.org/network/398580.Dshi_0375PFAM: ABC transporter related SMART: AAA ATPase, good swissprot to High-affinity branched-chain amino acid transport ATP-binding protein from Pseudomonas aeruginosa and high Ref ZP hit tobranched [...]
livH protein networkhttps://string-db.org/network/398580.Dshi_0376PFAM: inner-membrane translocator KEGG: rde:RD1_0704 branched-chain amino acid ABC transporter, permease protein, putative, low swissprot hit to High-affinity branched-chain amino acid transport [...]
Dshi_0377 protein networkhttps://string-db.org/network/398580.Dshi_0377Hypothetical protein; No significant BLAST hits, unsure GC frame plot, no conserved domains detected, lies in the middle of ABC transporter.
Dshi_0378 protein networkhttps://string-db.org/network/398580.Dshi_0378Hypothetical protein; No significant BLAST hits, unsure GC frame plot, no conserved domains detected, lies in the middle of ABC transporter.
livM protein networkhttps://string-db.org/network/398580.Dshi_0379PFAM: inner-membrane translocator KEGG: sil:SPO3292 branched-chain amino acid ABC transporter, permease protein; middle swissprot hit to High-affinity branched-chain amino acid transport system p [...]
livK protein networkhttps://string-db.org/network/398580.Dshi_0380High-affinity branched-chain amino acid transport system periplasmic binding protein livK; Pfam01094 Receptor family ligand binding region; bad swissprot hit to Leu/Ile/Val-binding protein homolo [...]
livF1 protein networkhttps://string-db.org/network/398580.Dshi_0381High-affinity branched-chain amino acid transport ATP-binding protein livF; PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4003 ABC transporter related, good swissprot hit to High [...]
paaK protein networkhttps://string-db.org/network/398580.Dshi_0382phenylacetate-CoA ligase; SSF56801 Acetyl-CoA sythase-like, low swissprot hit to Phenylacetate-coenzyme A ligase from Escherichia coli K12 and high Ref Yp hit to phenylacetate-CoA ligase, putativ [...]
Dshi_0383 protein networkhttps://string-db.org/network/398580.Dshi_0383Hypothetical protein; No significant BLAST hits, unsure GC frame plot, no conserved domains.
Dshi_0384 protein networkhttps://string-db.org/network/398580.Dshi_0384Hypothetical protein; KEGG: bur:Bcep18194_B1502 NUDIX hydrolase; no significant swissprot, bad Ref YP hit to NUDIX hydrolase from Burkholderia sp. 383; no conserved domains by Interpro Scan, NCBI [...]
dinB protein networkhttps://string-db.org/network/398580.Dshi_0385DNA-directed DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from misma [...]
hutG protein networkhttps://string-db.org/network/398580.Dshi_0386PFAM: N-formylglutamate amidohydrolase KEGG: rde:RD1_0718 N-formylglutamate amidohydrolase, putative; no signifcant swissprot; good Ref ZP hit to N-formylglutamate amidohydrolase family protein f [...]
rpmJ protein networkhttps://string-db.org/network/398580.Dshi_0387TIGRFAM: ribosomal protein L36 KEGG: jan:Jann_3997 ribosomal protein L36; NCBI conserved domains:rpmJ; Belongs to the bacterial ribosomal protein bL36 family.
rbsA5 protein networkhttps://string-db.org/network/398580.Dshi_0388Ribose import ATP-binding protein rbsA; PFAM: ABC transporter related SMART: AAA ATPase KEGG: sit:TM1040_0370 ABC transporter related; good swissprot hit to Ribose import ATP-binding protein rbsA [...]
rbsC2 protein networkhttps://string-db.org/network/398580.Dshi_0389Ribose transport system permease protein rbsC; PFAM: inner-membrane translocator KEGG: sit:TM1040_0369 inner-membrane translocator; middle swissprot hit to Ribose transport system permease protei [...]
rbsB3 protein networkhttps://string-db.org/network/398580.Dshi_0390PFAM: periplasmic binding protein/LacI transcriptional regulator KEGG: sit:TM1040_0368 periplasmic binding protein/LacI transcriptional regulator; low swissprot hit to D-ribose-binding periplasmi [...]
Dshi_0392 protein networkhttps://string-db.org/network/398580.Dshi_0392Conserved hypothetical protein; No significant swissprot, high Ref hit to hypothetical protein TM1040_3581 from Silicibacter sp. TM1040; no conserved domains, unsure GC frame plot.
Dshi_0393 protein networkhttps://string-db.org/network/398580.Dshi_0393Hypothetical protein; No significant swissprot, no conserved domains, bad Ref Yp hit to hypothetical protein TM1040_3583 from Silicibacter sp. TM1040, bad GC frame plot, CRISPR region.
Dshi_0394 protein networkhttps://string-db.org/network/398580.Dshi_0394Hypothetical protein; No significant swissprot, no conserved domains, bad GC frame plot; bad Ref Yp hit to hypothetical protein TM1040_3584 from Silicibacter sp. TM1040; CRISPR region.
Dshi_0395 protein networkhttps://string-db.org/network/398580.Dshi_0395PFAM: integrase family protein KEGG: sit:TM1040_3585 phage integrase; COG4974 - Site-specific recombinase XerD; high Ref YP hit to phage integrase from Silicibacter sp. TM1040 and bad swissprot h [...]
Dshi_0396 protein networkhttps://string-db.org/network/398580.Dshi_0396Recombinase; PFAM: Resolvase domain; Recombinase KEGG: pde:Pden_3123 recombinase; COG1961 - Site-specific recombinases, DNA invertase Pin homologs; bad swissprot hit toPutative DNA recombinase fr [...]
xerDC2 protein networkhttps://string-db.org/network/398580.Dshi_0397PFAM: integrase family protein; low swissprot hit to Tyrosine recombinase xerD from Bacillus subtilis and middle Ref EDP hit to phage integrase from alpha proteobacterium BAL199; NCBI conserved d [...]
xerDC1 protein networkhttps://string-db.org/network/398580.Dshi_0398PFAM: integrase family protein; COG4974 - Site-specific recombinase XerD; bad swissprot hit to Tyrosine recombinase xerC from Pseudomonas aeruginosa and good Ref ZP hit to phage integrase from Ro [...]
Dshi_0399 protein networkhttps://string-db.org/network/398580.Dshi_0399TIGRFAM: DNA binding domain, excisionase family PFAM: regulatory protein MerR; NCBI conserved domains: HTH_MerR-trunc; bad Ref YP hit to DNA binding domain, excisionase family from Alkaliphilus o [...]
cas9 protein networkhttps://string-db.org/network/398580.Dshi_0400CRISPR-associated protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transp [...]
cas1-2 protein networkhttps://string-db.org/network/398580.Dshi_0401CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, [...]
cas2-2 protein networkhttps://string-db.org/network/398580.Dshi_0402CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, [...]
Dshi_0403 protein networkhttps://string-db.org/network/398580.Dshi_0403Insertion element ISR1 uncharacterized 10 kDa protein A3; PFAM: transposase IS3/IS911 family protein; NCBI conserved domains: transposase_8; middle Ref ZP hit to Insertion element ISR1 hypothetic [...]
Dshi_0404 protein networkhttps://string-db.org/network/398580.Dshi_0404PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase, catalytic domain; good swissprot hit toInsertion element IS476 uncharacterized 39.2 kDa protein from Xanthomonas euvesicatoria; hig [...]
Dshi_0405 protein networkhttps://string-db.org/network/398580.Dshi_0405Hypothetical protein; No significant BLAST hits, no conserved domains, unsure GC frame plot, downstream of CRISPR region.
Dshi_0406 protein networkhttps://string-db.org/network/398580.Dshi_0406Hypothetical protein; No significant BLAST hits, no conserved domains, unsure GC frame plot.
Dshi_0407 protein networkhttps://string-db.org/network/398580.Dshi_0407Transcriptional regulator; PFAM: helix-turn-helix domain protein KEGG: nmu:Nmul_D2824 transcriptional regulator, XRE family; no significant swissprot, middle Ref YP hit to transcriptional regulat [...]
Dshi_0408 protein networkhttps://string-db.org/network/398580.Dshi_0408PFAM: protein of unknown function DUF955 KEGG: nmu:Nmul_D2822 hypothetical protein; no significant swissprot; middle Ref YP hit to hypothetical protein Nmul_D2822 from Nitrosospira multiformis AT [...]
Dshi_0409 protein networkhttps://string-db.org/network/398580.Dshi_0409KEGG: nwi:Nwi_1958 hypothetical protein; no significant swissprot, middle Ref YP hit to hypothetical protein Nwi_1958 from Nitrobacter winogradskyi Nb-255, no conserved domains detected.
Dshi_0410 protein networkhttps://string-db.org/network/398580.Dshi_0410Good Ref Yp hit to hypothetical protein RD1_0494 from Roseobacter denitrificans OCh 114; no significant swissprot; short signalpeptide and two transmembrane regions; unsure GC frame plot.
Dshi_0411 protein networkhttps://string-db.org/network/398580.Dshi_0411Good Ref YP hit to hypothetical protein RD1_0495 from Roseobacter denitrificans OCh 114; no significant swissprot; no NCBI conserved domains; PS00092 N-6 Adenine-specific DNA methylase.
fas protein networkhttps://string-db.org/network/398580.Dshi_0412PFAM: beta-Ig-H3/fasciclin; Hemolysin-type calcium-binding region KEGG: pde:Pden_0560 hemolysin-type calcium-binding region; NCBI conserved domains: Fasciclin; middle Ref YP hit to Beta-Ig-H3/fas [...]
Dshi_0413 protein networkhttps://string-db.org/network/398580.Dshi_0413Conserved hypothetical protein; No significant swissprot, unsure GC frame Plot, no conserved domains detected by InterPro Scan; NCBI conserved domains: COG1373 - Predicted ATPase (AAA+ superfamil [...]
Dshi_0414 protein networkhttps://string-db.org/network/398580.Dshi_0414KEGG: pde:Pden_4724 GreA/GreB family elongation factor; bad swissprot hit to Transcription elongation factor greA from Brucella suis; middle Ref ZP hit to putative nucleoside diphosphate kinase r [...]
Dshi_0415 protein networkhttps://string-db.org/network/398580.Dshi_0415Hypothetical protein; No significant BLAST hits, no conserved domains; unsure GC frame plot.
Dshi_0416 protein networkhttps://string-db.org/network/398580.Dshi_0416PFAM: protein of unknown function DUF1127; bad Ref ZP hit to hypothetical protein OB2597_05265 from Oceanicola batsensis HTCC2597; no significant swissprot, unsure GC frame plot.
Dshi_0417 protein networkhttps://string-db.org/network/398580.Dshi_0417Hypothetical protein; No significant BLAST hits, no conserved domains, unsure GC frame plot.
uspA2 protein networkhttps://string-db.org/network/398580.Dshi_0418PFAM: UspA domain protein KEGG: hha:Hhal_1414 UspA domain protein; COG0589 - Universal stress protein UspA and related nucleotide-binding proteins, bad swissprot hit to Stress response protein nh [...]
Dshi_0419 protein networkhttps://string-db.org/network/398580.Dshi_0419PFAM: major facilitator superfamily MFS_1 KEGG: sal:Sala_2954 major facilitator superfamily MFS_1; middle swissprot hit to Uncharacterized MFS-type transporter ycaD from Salmonella typhi and good [...]
Dshi_0420 protein networkhttps://string-db.org/network/398580.Dshi_0420PFAM: Endonuclease/exonuclease/phosphatase KEGG: sil:SPO2482 endonuclease/exonuclease/phosphatase family protein; no significant swissprot; good Ref EDP hit to metal-dependent hydrolase from Ocea [...]
Dshi_0421 protein networkhttps://string-db.org/network/398580.Dshi_0421PFAM: phospholipase D/Transphosphatidylase KEGG: pmy:Pmen_2055 phospholipase D/transphosphatidylase; high swissprot hit to Uncharacterized protein ymdC from Escherichia coli K12 and high Ref EDP [...]
Dshi_0422 protein networkhttps://string-db.org/network/398580.Dshi_0422PFAM: Propeptide PepSY amd peptidase M4 KEGG: swi:Swit_4515 hypothetical protein; no significant swissprot; bad gb hit to Propeptide, PepSY amd peptidase M4 from Oceanibulbus indolifex HEL-45.
pap protein networkhttps://string-db.org/network/398580.Dshi_0423PFAM: phosphoesterase PA-phosphatase related KEGG: rsh:Rsph17029_1755 phosphoesterase, PA-phosphatase related, no significant swissprot; good Ref YP hit to PA-phosphatase related phosphoesterase [...]
Dshi_0424 protein networkhttps://string-db.org/network/398580.Dshi_0424Peptidase M41.
Dshi_0426 protein networkhttps://string-db.org/network/398580.Dshi_0426Hypothetical protein; No significant swissprot; PD068243 REGULATORY BACTERIAL FAMILY MERR CYTOPLASMIC; middle Ref ZP hit to hypothetical protein ROS217_15345 from Roseovarius sp. 217.
Dshi_0427 protein networkhttps://string-db.org/network/398580.Dshi_0427Hypothetical protein; No significant swissprot, no conserved domains (except for one signalpeptide/ two transmembr. region), bad Ref YP hit to hypothetical protein AZC_2085 from Azorhizobium caul [...]
phaC protein networkhttps://string-db.org/network/398580.Dshi_0428PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; high Ref YP hit to poly(3-hydroxyalkanoa [...]
Dshi_0429 protein networkhttps://string-db.org/network/398580.Dshi_0429Uncharacterized conserved coiled coil protein; No significant swissprot, no conserved domains, low Ref Yp hit to uncharacterized conserved coiled coil protein from Marinomonas sp. MWYL1.
Dshi_0430 protein networkhttps://string-db.org/network/398580.Dshi_0430Conserved hypothetical protein; No significant swissprot, no conserved domains, low Ref YP hit to hypothetical protein SPO0412 from Silicibacter pomeroyi DSS-3.
dcuC protein networkhttps://string-db.org/network/398580.Dshi_0431PFAM: C4-dicarboxylate anaerobic carrier KEGG: mes:Meso_2242 C4-dicarboxylate anaerobic carrier; good swissprot hit to Uncharacterized protein HI0594 from Haemophilus influenzae; high Ref Yp hit [...]
arcA protein networkhttps://string-db.org/network/398580.Dshi_0432Arginine deiminase; PFAM: amidinotransferase KEGG: psa:PST_3978 arginine deiminase; high swissprot hit to Arginine deiminase (ADI) from Pseudomonas aeruginosa, NCBI conserved domains: arcA.
arcB protein networkhttps://string-db.org/network/398580.Dshi_0433Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
arcC protein networkhttps://string-db.org/network/398580.Dshi_0434KEGG: mes:Meso_2239 carbamate kinase TIGRFAM: carbamate kinase PFAM: aspartate/glutamate/uridylate kinase; similar to Carbamate kinase from Pseudomonas aeruginosa.
atpD1 protein networkhttps://string-db.org/network/398580.Dshi_0435ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase [...]
atpC2 protein networkhttps://string-db.org/network/398580.Dshi_0436ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
Dshi_0437 protein networkhttps://string-db.org/network/398580.Dshi_0437TIGRFAM: F0F1-ATPase subunit, putative PFAM: F0F1-ATPase subunit putative KEGG: net:Neut_2015 F0F1-ATPase subunit, putative; no significant swissprot; low Ref ZP hit to H(+)-transporting ATP synt [...]
Dshi_0438 protein networkhttps://string-db.org/network/398580.Dshi_0438ATP synthase F0F1, subunit; No significant swissprot and no conserved domains (except from signalpep. and three transmembr. regions); low, but best Ref ZP hit to F0F1 ATP synthase subunit A from [...]
atpB2 protein networkhttps://string-db.org/network/398580.Dshi_0439ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
atpE1 protein networkhttps://string-db.org/network/398580.Dshi_0440ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extra [...]
atpF1 protein networkhttps://string-db.org/network/398580.Dshi_0441ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extra [...]
atpA2 protein networkhttps://string-db.org/network/398580.Dshi_0442ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains fa [...]
atpG1 protein networkhttps://string-db.org/network/398580.Dshi_0443PFAM: H+transporting two-sector ATPase gamma subunit KEGG: net:Neut_2021 H+-transporting two-sector ATPase, gamma subunit; low swissprot hit to ATP synthase gamma chain from Desulfovibrio vulgari [...]
Dshi_0444 protein networkhttps://string-db.org/network/398580.Dshi_0444Conserved hypothetical protein; No significant swissprot, no conserved domains, low Ref YP hit to hypothetical protein Nham_4077 from Nitrobacter hamburgensis X14.
Dshi_0445 protein networkhttps://string-db.org/network/398580.Dshi_0445Conserved hypothetical protein; No significant swissprot, no conserved domains, low Ref ZP hit to hypothetical protein NB311A_09431 from Nitrobacter sp. Nb-311A.
Dshi_0446 protein networkhttps://string-db.org/network/398580.Dshi_0446Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; middle Ref YP hit to CBS domain containing protein from Mesorhizobium sp. BNC1 and bad swissprot to Unc [...]
Dshi_0447 protein networkhttps://string-db.org/network/398580.Dshi_0447PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp; low swissprot hit to Transcriptional activatory protein aadR from Rhodopseudomonas palustris and middle Ref ZP hit to transcriptiona [...]
Dshi_0448 protein networkhttps://string-db.org/network/398580.Dshi_0448Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; midd [...]
Dshi_0449 protein networkhttps://string-db.org/network/398580.Dshi_0449PFAM: response regulator receiver; transcriptional regulator domain protein; middle swissprot hit to Transcriptional regulatory protein dltR from Streptococcus agalactiae serogroup III (Phosphory [...]
pqqA protein networkhttps://string-db.org/network/398580.Dshi_0450Coenzyme PQQ biosynthesis protein A; Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis. PQQ is probably formed by cross-linking a specific glutamate to a specific tyrosine residue [...]
pqqB protein networkhttps://string-db.org/network/398580.Dshi_0451Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
pqqC protein networkhttps://string-db.org/network/398580.Dshi_0452Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
pqqD protein networkhttps://string-db.org/network/398580.Dshi_0453PFAM: coenzyme PQQ synthesis D; low swissprot hit to Coenzyme PQQ synthesis protein D from Silicibacter pomeroyi; middle Ref ZP hit to coenzyme PQQ synthesis protein D from Roseovarius sp. HTCC26 [...]
pqqE protein networkhttps://string-db.org/network/398580.Dshi_0454Coenzyme PQQ biosynthesis protein E; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ).
Dshi_0455 protein networkhttps://string-db.org/network/398580.Dshi_0455Hypothetical protein; No significant swissprot; no conserved domains except for short signalpeptide; high Ref YP hit to hypothetical protein RD1_0870 from Roseobacter denitrificans OCh 114.
moxR protein networkhttps://string-db.org/network/398580.Dshi_0456PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase KEGG: rde:RD1_0871 MoxR-like ATPase, middle swissprot hi [...]
Dshi_0457 protein networkhttps://string-db.org/network/398580.Dshi_0457PFAM: protein of unknown function DUF58; no significant swissprot; high Ref YP hit to hypothetical protein RD1_0873 from Roseobacter denitrificans OCh 114.
Dshi_0458 protein networkhttps://string-db.org/network/398580.Dshi_0458Hypothetical protein; No significant swissprot, no conserved domains; middle Ref YP hit to hypothetical protein RD1_0874 from Roseobacter denitrificans OCh 114.
Dshi_0459 protein networkhttps://string-db.org/network/398580.Dshi_0459PFAM: von Willebrand factor type A KEGG: rde:RD1_0875 hypothetical protein; bad swissprot hit to Uncharacterized protein BB_0173 from Borrelia burgdorferi, unsure GC frame plot.
Dshi_0460 protein networkhttps://string-db.org/network/398580.Dshi_0460Conserved hypothetical protein; No significant swissprot, unsure GC frame plot; NCBI conserved domains: VWA domain (von Willebrand factor); high Ref YP hit to hypothetical protein RD1_0876 from R [...]
Dshi_0461 protein networkhttps://string-db.org/network/398580.Dshi_0461Conserved hypothetical protein; Unsure GC frame plot, no conserved domains (except for one signalpep. and one transmembr. region); good Ref YP hit to hypothetical protein RD1_0877 from Roseobacte [...]
Dshi_0462 protein networkhttps://string-db.org/network/398580.Dshi_0462Conserved hypothetical protein; No significant swissprot, unsure GC frame plot; high Ref YP hit to hypothetical protein RD1_0878 from Roseobacter denitrificans OCh 114.
Dshi_0463 protein networkhttps://string-db.org/network/398580.Dshi_0463PFAM: transposase IS3/IS911 family protein KEGG: rde:RD1_3450 inverted repeat region; middle swissprot hit to Insertion element ISR1 uncharacterized 10 kDa protein A3 from Rhizobium sp.
Dshi_0464 protein networkhttps://string-db.org/network/398580.Dshi_0464PFAM: Integrase catalytic region KEGG: rde:RD1_3449 integrase, catalytic domain, putative; good swissprot hit to Insertion element IS476 uncharacterized 39.2 kDa protein from Xanthomonas euvesica [...]
luxR2 protein networkhttps://string-db.org/network/398580.Dshi_0465Two component transcriptional regulator; Blast hits, no swissprot, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, PFAM: regulatory protein LuxR; response [...]
Dshi_0466 protein networkhttps://string-db.org/network/398580.Dshi_0466PFAM: domain of unknown function DUF1745, no significant swissprot, unsure GC frame plot; high Ref YP hit to hypothetical protein RD1_0880 from Roseobacter denitrificans OCh 114.
Dshi_0467 protein networkhttps://string-db.org/network/398580.Dshi_0467Sensor histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; middle swissprot to Sensor protein rcsC from Salmonella ty [...]
Dshi_0468 protein networkhttps://string-db.org/network/398580.Dshi_0468Conserved hypothetical protein; No significant swissprot; high Ref YP hit to hypothetical protein RD1_0882 from Roseobacter denitrificans OCh 114.
Dshi_0469 protein networkhttps://string-db.org/network/398580.Dshi_0469Conserved hypothetical protein; No significant swissprot, good ref YP hit to hypothetical protein RD1_0883 from Roseobacter denitrificans OCh 114; no conserved domains (except from signalpep.).
soxZ protein networkhttps://string-db.org/network/398580.Dshi_0470PFAM: Sulphur oxidation protein SoxZ; no significant swissprot; good Ref YP hit to Sulphur oxidation protein SoxZ from Sinorhizobium medicae WSM419; NCBI conserved domains: SoxZ and PRK07474, sul [...]
Dshi_0471 protein networkhttps://string-db.org/network/398580.Dshi_0471PFAM: beta-lactamase domain protein; KEGG: rde:RD1_0885 hypothetical protein; no significant swissprot, unsure GC frame plot; high Ref YP hit to beta-lactamase domain protein from Sinorhizobium m [...]
Dshi_0472 protein networkhttps://string-db.org/network/398580.Dshi_0472Conserved hypothetical protein; No significant swissprot, no conserved domains, high REf YP hit to hypothetical protein RD1_0886 from Roseobacter denitrificans OCh 114.
Dshi_0473 protein networkhttps://string-db.org/network/398580.Dshi_0473TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; high swiss [...]
Dshi_0474 protein networkhttps://string-db.org/network/398580.Dshi_0474S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
cytC protein networkhttps://string-db.org/network/398580.Dshi_0475PFAM: cytochrome c class I; low swissprot hit to Cytochrome c-552 from Paracoccus denitrificans; high Ref YP hit to cytochrome c family protein from Roseobacter denitrificans OCh 114.
gcd protein networkhttps://string-db.org/network/398580.Dshi_0476Quinoprotein glucose dehydrogenase; PFAM: Pyrrolo-quinoline quinone; high swissprot hit to Putative dehydrogenase xoxF precursor from Paracoccus denitrificans; high Ref YP hit to Pyrrolo-quinolin [...]
cccA protein networkhttps://string-db.org/network/398580.Dshi_0477SSF46626 Cytochrome c, monohaem; NCBI conserved domains: CccA, Cytochrome c, mono- and diheme variants, good swissprot hit to Cytochrome c-553I precursor from Paracoccus denitrificans; good Ref Z [...]
Dshi_0478 protein networkhttps://string-db.org/network/398580.Dshi_0478SMART: extracellular solute-binding protein family; NCBI conserved domains: PbPb; low swissprot hit to Protein moxJ precursor from Methylobacterium extorquens (May be involved in the assemblage o [...]
Dshi_0479 protein networkhttps://string-db.org/network/398580.Dshi_0479Conserved hypothetical protein; No significant swissprot, unsure GC frame plot, good gb hit to hypothetical protein RLO149_07849 from Roseobacter litoralis Och 149; NCBI conserved domains: RHOD, [...]
Dshi_0480 protein networkhttps://string-db.org/network/398580.Dshi_0480Hypothetical protein; No significant swissprot, unsure GC frame plot; middle gb hit to hypothetical protein RLO149_03449 from Roseobacter litoralis Och 149; no conserved domains detected (except [...]
Dshi_0481 protein networkhttps://string-db.org/network/398580.Dshi_0481Conserved hypothetical protein; No significant swissprot, high Ref YP hit to hypothetical protein RD1_0894 from Roseobacter denitrificans OCh 114; NCBI conserved domains: COG5501, Predicted secre [...]
Dshi_0482 protein networkhttps://string-db.org/network/398580.Dshi_0482Conserved hypothetical protein; No significant swissprot, unsure GC frame plot; no conserved domains; good Ref YP hit to hypothetical protein RD1_0897 from Roseobacter denitrificans OCh 114.
Dshi_0483 protein networkhttps://string-db.org/network/398580.Dshi_0483Conserved hypothetical protein; No significant swissprot, unsure GC frame plot (N-terminal); SSF53822 Periplasmic binding protein-like I; high gb hit to hypothetical protein RLO149_07824 [Roseoba [...]
Dshi_0484 protein networkhttps://string-db.org/network/398580.Dshi_0484TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; SSF50969 Quinoprotein amine dehydrogenase, beta chain-like, no significant swissprot, high Ref YP hit to 40-residue YVTN family beta [...]
Dshi_0485 protein networkhttps://string-db.org/network/398580.Dshi_0485Conserved hypothetical protein; No significant swissprot, no conserved domains, high Ref YP hit to hypothetical protein RD1_0900 [Roseobacter denitrificans OCh 114].
Dshi_0486 protein networkhttps://string-db.org/network/398580.Dshi_0486Conserved hypothetical protein; No significant swissprot, no conserved domains, middle gb hit to hypothetical protein RLO149_07809 [Roseobacter litoralis Och 149].
Dshi_0487 protein networkhttps://string-db.org/network/398580.Dshi_0487Hypothetical protein; No significant swissprot; bad Ref XP hit to TPR repeat protein [Entamoeba histolytica HM-1:IMSS]; InterPro Scan: G3DSA:1.25.40.10 Tetratricopeptide-like helical.
Dshi_0488 protein networkhttps://string-db.org/network/398580.Dshi_0488Hypothetical protein; No significant BLAST hits, no conserved domains (except for two transmembr. regions); good RBS site : AGGAT.
Dshi_0489 protein networkhttps://string-db.org/network/398580.Dshi_0489Hypothetical protein; No significant BLAST hits, unsure GC frame plot; NCBI conserved domains: mncomplete BisC domain, Anaerobic dehydrogenases, typically selenocysteine-containing.
Dshi_0490 protein networkhttps://string-db.org/network/398580.Dshi_0490Protein of unknown function DUF454; Low swissprot hit to Inner membrane protein ybaN from Escherichia coli K12; low Ref YP hit toprotein of unknown function DUF454 from Rhodobacter sphaeroides AT [...]
ssuA1 protein networkhttps://string-db.org/network/398580.Dshi_0491Putative sulfonate/nitrate transport system substrate-binding protein; Low swissprot hit to Putative aliphatic sulfonates-binding protein precursor from Escherichia coli K12; good Ref YP hit toTw [...]
ssuC1 protein networkhttps://string-db.org/network/398580.Dshi_0492PFAM: binding-protein-dependent transport systems inner membrane component; COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; low swissprot toNitrate tra [...]
ssuB1 protein networkhttps://string-db.org/network/398580.Dshi_0493Sulfonate/nitrate/taurine transport system ATP-binding; PFAM: ABC transporter related SMART: AAA ATPase; COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; NCBI [...]
nnrS protein networkhttps://string-db.org/network/398580.Dshi_0494PFAM: NnrS family protein KEGG: pde:Pden_4166 NnrS family protein; no swissprot; good gb hit to NnrS [Rhodobacter capsulatus]; NCBI conserved domains: NnrS.
Dshi_0495 protein networkhttps://string-db.org/network/398580.Dshi_0495Hypothetical protein; No significant swissprot; low Ref NP hit to ferrienterobactin-like protein [Agrobacterium tumefaciens str. C58]; Pfam07715 TonB-dependent Receptor Plug Domain.
Dshi_0496 protein networkhttps://string-db.org/network/398580.Dshi_0496PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; no significant swissprot, unsure GC frame plot; high Ref ZP hit to putative ferredoxin [Loktanella vestfoldensis SKA53].
Dshi_0497 protein networkhttps://string-db.org/network/398580.Dshi_0497Conserved hypothetical protein; No significant swissprot, unsure GC frame plot, no conserved domains; good Ref ZP hit to hypothetical protein SKA53_09144 [Loktanella vestfoldensis SKA53].
Dshi_0498 protein networkhttps://string-db.org/network/398580.Dshi_0498Conserved hypothetical protein; No significant swissprot; unsure GC frame plot; no conserved domains; good Ref ZP hit to hypothetical protein SKA53_09139 [Loktanella vestfoldensis SKA53].
Dshi_0499 protein networkhttps://string-db.org/network/398580.Dshi_0499Conserved hypothetical protein; No significant swissprot, unsure GC frame plot; no conserved domains; high Ref ZP hit to hypothetical protein SKA53_09134 [Loktanella vestfoldensis SKA53].
Dshi_0500 protein networkhttps://string-db.org/network/398580.Dshi_0500Hypothetical protein; No significant swissprot; no conserved domains; unsure GC frame plot; low Ref ZP hit to molybdopterin-guanine dinucleotide biosynthesis protein A from Methylobacterium extor [...]
Dshi_0501 protein networkhttps://string-db.org/network/398580.Dshi_0501Conserved hypothetical protein; No significant swissprot, no conserved domains; low Ref ZP hit to hypothetical protein SKA53_09124 [Loktanella vestfoldensis SKA53].
torD protein networkhttps://string-db.org/network/398580.Dshi_0502PFAM: cytoplasmic chaperone TorD family protein; low swissprot to Chaperone protein torD from Vibrio cholerae and high Ref ZP hit toputative chaperone [Loktanella vestfoldensis SKA53]; NCBI conse [...]
Dshi_0503 protein networkhttps://string-db.org/network/398580.Dshi_0503Hypothetical protein; No significant swissprot; bad Ref ZP hit to hypothetical protein SKA53_09114 [Loktanella vestfoldensis SKA53]; no conserved domains (except for one transmem. region).
fdnG protein networkhttps://string-db.org/network/398580.Dshi_0504Formate dehydrogenase alpha chain; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4; high swissprot hit to Formate dehydrogenase al [...]
fdnH protein networkhttps://string-db.org/network/398580.Dshi_0505Formate dehydrogenase iron-sulfur subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; good swissprot hit to Formate dehydrogenase iron-sulfur subunit from Wolinella succinogenes; [...]
fdnI protein networkhttps://string-db.org/network/398580.Dshi_0506TIGRFAM: formate dehydrogenase, gamma subunit; middle swissprot hit to Formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit (Formate dehydrogenase-N subunit gamma) from Escheric [...]
Dshi_0507 protein networkhttps://string-db.org/network/398580.Dshi_0507MRP-like protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
Dshi_0508 protein networkhttps://string-db.org/network/398580.Dshi_0508PFAM: cytochrome c class I; SMART: WD-40 repeat protein, unsure GC frame plot; low swissprot hit to Cytochrome c from Cochliobolus lunatus; good Ref ZP hit to cytochrome c, class I [Methylobacter [...]
Dshi_0509 protein networkhttps://string-db.org/network/398580.Dshi_0509Conserved hypothetical protein; No significant swissprot, no conserved domains (except for one signalpep.); unsure GC frame plot; good Ref YP hit to hypothetical protein Spro_3113 [Serratia prote [...]
Dshi_0510 protein networkhttps://string-db.org/network/398580.Dshi_0510Conserved hypothetical beta-lactamase; Good swissprot hit to Alkyl/aryl-sulfatase BDS1 (Bacterially-derived sulfatase 1) from Saccharomyces cerevisiae, high Ref ZP hit to beta-lactamase domain pr [...]
Dshi_0511 protein networkhttps://string-db.org/network/398580.Dshi_0511Conserved hypothetical protein; May be part of Gene Dshi_0510; low swissprot hit to Alkyl/aryl-sulfatase BDS1 (Bacterially-derived sulfatase 1) from Saccharomyces cerevisiae; middle Ref YP hit to [...]
Dshi_0512 protein networkhttps://string-db.org/network/398580.Dshi_0512Beta-lactamase domain protein; Pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily; COG2333, ComEC, Predicted hydrolase; low swissprot hit to Alkyl/aryl-sulfatase BDS1 (Bacterially-derived [...]
Dshi_0513 protein networkhttps://string-db.org/network/398580.Dshi_0513Pfam00196, GerE, Bacterial regulatory proteins, luxR family; low swissprot hit to Transcriptional regulatory protein fixJ from Sinorhizobium meliloti; middle Ref ZP hit to putative two-component [...]
Dshi_0514 protein networkhttps://string-db.org/network/398580.Dshi_0514Bad swissprot to Transcriptional regulatory protein fixJ from Azorhizobium caulinodans; low Ref ZP hit to putative two-component response regulator [Roseovarius sp. HTCC2601]; PFAM00072 response [...]
Dshi_0515 protein networkhttps://string-db.org/network/398580.Dshi_0515Histidine kinase; Unsure GC frame plot; - PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; NCBI conserved domains: HisKA; middle swissprot hit to Sensor protein [...]
Dshi_0516 protein networkhttps://string-db.org/network/398580.Dshi_0516Putative two-component sensor kinase; Pfam04392, ABC_sub_bind, ABC transporter substrate binding protein; no significant swissprot; good Ref ZP hit to probable sensor histidine kinase of two-comp [...]
araF2 protein networkhttps://string-db.org/network/398580.Dshi_0517PFAM: periplasmic binding protein/LacI transcriptional regulator; COG4213, XylF, ABC-type xylose transport system, periplasmic component; low swissprot hit to D-ribose-binding protein precursor f [...]
araH1 protein networkhttps://string-db.org/network/398580.Dshi_0518PFAM: inner-membrane translocator; NCBI conserved domains: COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; PRK09512, rbsC, ribose ABC transport [...]
araG1 protein networkhttps://string-db.org/network/398580.Dshi_0519Ribose/xylose/arabinose/galactoside ABC-type transport system protein; PFAM: ABC transporter related SMART: AAA ATPase, high swissprot to Arabinose import ATP-binding protein araG from Pseudomona [...]
mtnK protein networkhttps://string-db.org/network/398580.Dshi_05205-methylthioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
mtnA protein networkhttps://string-db.org/network/398580.Dshi_0521Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
deoR3 protein networkhttps://string-db.org/network/398580.Dshi_0522Transcriptional regulator; PFAM: putative sugar-binding domain protein; NCBI conserved domains: pfam04198, Sugar-bind, Putative sugar-binding domain; COG2390, DeoR, Transcriptional regulator, con [...]
fucA protein networkhttps://string-db.org/network/398580.Dshi_0523PFAM: class II aldolase/adducin family protein; COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; good swissprot hit to L-fuculose phosphate aldolase from Esch [...]
Dshi_0524 protein networkhttps://string-db.org/network/398580.Dshi_0524Pfam00248: aldo/keto reductase; COG0667, Tas, Predicted oxidoreductases; good swissprot hit to Uncharacterized oxidoreductase yajO from Escherichia coli K12; high Ref NP hit to oxido-reductase, a [...]
Dshi_0525 protein networkhttps://string-db.org/network/398580.Dshi_0525ATPase-like protein; No significant swissprot, unsure GC frame plot; COG3911, Predicted ATPase; cd00009, AAA, AAA-superfamily of ATPases; good Ref ZP hit to ATPase-like protein [Sagittula stellat [...]
dahL protein networkhttps://string-db.org/network/398580.Dshi_0526PTS-dependent dihydroxyacetone kinase; PFAM:PF02734 Dak phosphatase; NCBI conserved domains: PRK10005, dihydroxyacetone kinase, C-terminal domain; low swissprot hit to PTS-dependent dihydroxyacet [...]
dahK protein networkhttps://string-db.org/network/398580.Dshi_0527PFAM: Dak kinase; NCBI conserved domains: PRK11468, dihydroxyacetone kinase subunit DhaK; good swissprot hit to PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit dhaK from E [...]
araH2 protein networkhttps://string-db.org/network/398580.Dshi_0528PFAM: inner-membrane translocator; NCBI conserved domains: COG1172, AraH; middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis; good Ref NP hit to ABC tran [...]
araH3 protein networkhttps://string-db.org/network/398580.Dshi_0529PFAM: inner-membrane translocator; NCBI conserved domains: COG1172, AraH; middle swissprot hit to Ribose transport system permease protein rbsC from Bacillus subtilis; good Ref ZP hit to putative [...]
araG2 protein networkhttps://string-db.org/network/398580.Dshi_0530Ribose/xylose/arabinose/galactoside ABC-type transport system protein; PFAM: ABC transporter related SMART: AAA ATPase; high swissprot hit to Ribose import ATP-binding protein rbsA 3 from Rubroba [...]
araF1 protein networkhttps://string-db.org/network/398580.Dshi_0531NCBI conserved domains: COG4213, XylF, ABC-type xylose transport system, periplasmic component; low swissprot hit to Uncharacterized protein yneA precursor from Escherichia coli K12; high Ref ZP [...]
deoR2 protein networkhttps://string-db.org/network/398580.Dshi_0532Transcriptional regulator; PFAM: putative sugar-binding domain protein; NCBI conserved domains: pfam04198, Sugar-bind and COG2390, DeoR; middle swissprot hit to Deoxyribonucleoside regulator from [...]
Dshi_0533 protein networkhttps://string-db.org/network/398580.Dshi_0533PFAM: Xylose isomerase domain protein TIM barrel; NCBI conserved domains: cd00019, AP2Ec, AP endonuclease family 2; middle swissprot hit to Uncharacterized protein sll1304 from Synechocystis sp. [...]
pdhA2 protein networkhttps://string-db.org/network/398580.Dshi_0534PFAM: dehydrogenase E1 component; good swissprot hit to Pyruvate dehydrogenase E1 component subunit alpha from Zymomonas mobilis; high Ref YP hit to dehydrogenase E1 component [Sinorhizobium medi [...]
pdhB1 protein networkhttps://string-db.org/network/398580.Dshi_0535Pyruvate dehydrogenase E1 component subunit beta; PFAM: Transketolase central region; Transketolase domain protein; high swissprot hit to Pyruvate dehydrogenase E1 component subunit beta from Ric [...]
pdhC2 protein networkhttps://string-db.org/network/398580.Dshi_0536Dihydrolipoamide acetyltransferase; PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; middle swissprot hit to Acetoin dehydrogenase E [...]
Dshi_0537 protein networkhttps://string-db.org/network/398580.Dshi_0537PFAM: carbohydrate kinase FGGY; NCBI conserved domains: AraB, XylB; good swissprot hit to Ribulokinase from Bacillus clausii KSM-K16; high Ref YP hit to carbohydrate kinase FGGY [Sinorhizobium me [...]
Dshi_0538 protein networkhttps://string-db.org/network/398580.Dshi_0538Protein of unknown function DUF1045; Unsure GC frame plot; no significant swissprot; PFAM: protein of unknown function DUF1045; high Ref ZP hit to hypothetical protein SSE37_12456 [Sagittula stel [...]
Dshi_0539 protein networkhttps://string-db.org/network/398580.Dshi_0539Oxidoreductase; PFAM: aldo/keto reductase; COG0667, Tas, Predicted oxidoreductases; high Ref ZP hit to oxidoreductase, aldo/keto reductase family protein [Sagittula stellata E-37]; good swissprot [...]
Dshi_0540 protein networkhttps://string-db.org/network/398580.Dshi_0540NnrU family protein; Unsure GC frame plot; no significant swissprot; PFAM: NnrUfamily protein; NCBI conserved domains: pfam07298, NnrU, NnrU protein; good Ref ZP hit to NnrU family protein [Roseo [...]
hemN1 protein networkhttps://string-db.org/network/398580.Dshi_0541TIGRFAM: oxygen-independent coproporphyrinogen III oxidase PFAM: Radical SAM domain protein; HemN domain protein SMART: Elongator protein 3/MiaB/NifB; high swissprot hit to Oxygen-independent cop [...]
Dshi_0542 protein networkhttps://string-db.org/network/398580.Dshi_0542Phosphate transporter; NCBI conserved domains: pfam01384, PHO4, Phosphate transporter family; COG0306, PitA, Phosphate/sulphate permeases; high swissprot hit to Putative phosphate permease jhp_13 [...]
Dshi_0543 protein networkhttps://string-db.org/network/398580.Dshi_0543Na+/Pi-cotransporter; NCBI conserved domains: pfam02690, Na_Pi_cotrans, Na+/Pi-cotransporter; COG1283, NptA, Na+/phosphate symporter, bad swissprot hit to Na(+)/Pi cotransporter 2B from Bos tauru [...]
Dshi_0544 protein networkhttps://string-db.org/network/398580.Dshi_0544Hypothetical protein; No significant BLAST hits, no conserved domains detected.
Dshi_0545 protein networkhttps://string-db.org/network/398580.Dshi_0545TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 PFAM: Haloacid dehalogenase domain protein hydrolase, NCBI conserved domains: COG06 [...]
ugpC2 protein networkhttps://string-db.org/network/398580.Dshi_0546ABC-type sugar / sn-glycerol-3-phosphate import ATP-binding protein ugpC; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein SMART: AAA ATPase; high swissp [...]
ugpB4 protein networkhttps://string-db.org/network/398580.Dshi_0547PFAM: extracellular solute-binding protein family, NCBI conserved domains: COG1653, UgpB, ABC-type sugar transport system, periplasmic component; low swissprot hit to Putative binding protein Bru [...]
ugpA1 protein networkhttps://string-db.org/network/398580.Dshi_0548PFAM: binding-protein-dependent transport systems inner membrane component, NCBI conserved domains: COG1175, UgpA, ABC-type sugar transport systems, permease components; middle swissprot hit to P [...]
ugpE4 protein networkhttps://string-db.org/network/398580.Dshi_0549PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG0395, UgpE, ABC-type sugar transport system, permease component and COG3833, MalG, ABC-type [...]
deoR1 protein networkhttps://string-db.org/network/398580.Dshi_0550Transcriptional regulator; PFAM: putative sugar-binding domain protein; low swissprot hit to Deoxyribonucleoside regulator DeoR from Bacillus subtilis; high gb hit to putative transcriptional reg [...]
xylD protein networkhttps://string-db.org/network/398580.Dshi_0551D-xylulose reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; high swissprot hit to Putative D-xylulose reductase from Sinorhizobium m [...]
Dshi_0552 protein networkhttps://string-db.org/network/398580.Dshi_0552PFAM: sugar isomerase (SIS); middle swissprot to 3-hexulose-6-phosphate isomerase from Bacillus subtilis; good gb hit to 6-phospho-3-hexuloisomerase [Hoeflea phototrophica DFL-43].
Dshi_0553 protein networkhttps://string-db.org/network/398580.Dshi_0553PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NCBI conserved domains: PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; middle swissprot hit to3-oxoacyl-[acyl-carri [...]
rbtD protein networkhttps://string-db.org/network/398580.Dshi_0554Ribitol 2-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; high swissprot hit to Ribitol 2-dehydrogenase (RDH) from Klebsiella aerogenes; high Ref YP hit to probab [...]
araB protein networkhttps://string-db.org/network/398580.Dshi_0555Ribulokinase; TIGRFAM: FGGY-family pentulose kinase PFAM: carbohydrate kinase FGGY; good swissprot hit to Uncharacterized sugar kinase YDR109C from Saccharomyces cerevisiae; high gb hit to ribito [...]
Dshi_0556 protein networkhttps://string-db.org/network/398580.Dshi_0556Hypothetical protein; Unsure GC frame plot, no significant swissprot, bad gb hit to nucleoside diphosphate kinase regulator from Oceanibulbus indolifex HEL-45; NCBI conserved domains: PRK05753, n [...]
greA2 protein networkhttps://string-db.org/network/398580.Dshi_0557PFAM: transcription elongation factor GreA/GreB domain protein, NCBI conserved domains: COG0782, GreA, Transcription elongation factor, bad swissprot hit to Transcription elongation factor greA f [...]
dadA protein networkhttps://string-db.org/network/398580.Dshi_0558D-amino-acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase; NCBI conserved domains: PRK00711, D-amino acid dehydrogenase small subunit; high swissprot hit to D-amino acid dehydr [...]
Dshi_0559 protein networkhttps://string-db.org/network/398580.Dshi_0559Protein of unknown function DUF1636; Unsure GC frame plot, no significant swissprot, PFAM: protein of unknown function DUF1636; NCBI conserved domains: COG5469, Predicted metal-binding protein; m [...]
fhuC protein networkhttps://string-db.org/network/398580.Dshi_0560ABC-type cobalamin/Fe3+-siderophores transport system protein; PFAM: ABC transporter related SMART: AAA ATPase; good swissprot hit to Ferrichrome transport ATP-binding protein fhuC from Escherich [...]
fhuD protein networkhttps://string-db.org/network/398580.Dshi_0561ABC-type cobalamin/Fe3+-siderophores transport system protein; PFAM: periplasmic binding protein; low swissprot hit to Vitamin B12-binding protein precursor from Escherichia coli O6; high Ref YP [...]
fhuB protein networkhttps://string-db.org/network/398580.Dshi_0562PFAM: transport system permease protein; NCBI conserved domains: fecCD, fepDG, btuC; good swissprot hit to Ferrichrome transport system permease protein fhuB from Bacillus subtilis; high gb hit t [...]
irpA protein networkhttps://string-db.org/network/398580.Dshi_0563Iron-regulated protein; Unsure GC frame plot; NCBI conserved domains: COG3487, IrpA, Uncharacterized iron-regulated protein; low swissprot hit to Iron-regulated protein A precursor from Synechoco [...]
Dshi_0564 protein networkhttps://string-db.org/network/398580.Dshi_0564PFAM: protein of unknown function DUF1111; NCBI conserved domains: COG3488, Predicted thiol oxidoreductase; no significant swissprot; high Ref ZP hit to probable thiol oxidoreductase with 2 cytoc [...]
Dshi_0565 protein networkhttps://string-db.org/network/398580.Dshi_0565Conserved hypothetical protein; Low swissprot hit to Iron-regulated protein A precursor from Synechococcus elongatus PCC 7942; high Ref ZP hit to hypothetical protein RB2150_00045 [Rhodobacterale [...]
Dshi_0566 protein networkhttps://string-db.org/network/398580.Dshi_0566Conserved hypothetical protein; NCBI conserved domains: pfam07433, DUF1513, COG3490, Uncharacterized protein conserved in bacteria, no significant swissprot; high Ref ZP hit to hypothetical prote [...]
Dshi_0567 protein networkhttps://string-db.org/network/398580.Dshi_0567TonB family protein; Unsure GC frame plot; TIGRFAM: TonB family protein; low swissprot hit to Protein tonB from Pseudomonas putida; low Ref ZP hit toPutative TonB protein [Roseobacter sp. SK209-2 [...]
exbD protein networkhttps://string-db.org/network/398580.Dshi_0568PFAM: Biopolymer transport protein ExbD/TolR; low swissprot hit to Biopolymer transport protein exbD1 from Vibrio cholerae; low gb hit to Biopolymer transport protein ExbD/TolR [alpha proteobacte [...]
exbB protein networkhttps://string-db.org/network/398580.Dshi_0569PFAM: MotA/TolQ/ExbB proton channel; low swissprot hit to Putative biopolymer transport protein exbB homolog from Methanothermobacter thermautotrophicus str. Delta H; good Ref ZP hit to MotA/TolQ [...]
fhuA protein networkhttps://string-db.org/network/398580.Dshi_0570ABC-type cobalamin/Fe3+-siderophores transport system protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; low swissprot hit to Vitamin B12 transporter btuB precursor from Photob [...]
hmuV protein networkhttps://string-db.org/network/398580.Dshi_0571Hemin import ATP-binding protein hmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
hmuU protein networkhttps://string-db.org/network/398580.Dshi_0572PFAM: transport system permease protein; good swissprot hit to Hemin transport system permease protein hmuU from Yersinia pestis; high embl hit to HmuU protein [Rhizobium leguminosarum]; Belongs [...]
hmuT protein networkhttps://string-db.org/network/398580.Dshi_0573PFAM: periplasmic binding protein; good swissprot hit to Hemin-binding periplasmic protein hmuT precursor from Yersinia pestis; high Ref YP hit to hemin ABC transporter, periplasmic hemin-binding [...]
hmuS protein networkhttps://string-db.org/network/398580.Dshi_0574Hemin transport protein hmuS; PFAM: Haemin-degrading family protein; NCBI conserved domains: hemS; good swissprot hit to Hemin transport protein hmuS fromYersinia pestis; high Ref ZP hit to Haemi [...]
Dshi_0575 protein networkhttps://string-db.org/network/398580.Dshi_0575Conserved hypothetical protein; No significant swissprot, no conserved domains; low Ref ZP hit to hypothetical protein SSE37_21645 [Sagittula stellata E-37].
Dshi_0576 protein networkhttps://string-db.org/network/398580.Dshi_0576PFAM: regulatory protein LysR; LysR substrate-binding; low swissprot hit to Uncharacterized HTH-type transcriptional regulator ydcI from Escherichia coli K12; middle Ref ZP hit to transcriptional [...]
aldH2 protein networkhttps://string-db.org/network/398580.Dshi_0577PFAM: aldehyde dehydrogenase, NCBI conserved domains: pfam00171, Aldedh, Aldehyde dehydrogenase family; high swissprot hit to Aldehyde dehydrogenase, thermostable from Geobacillus stearothermophi [...]
rDP protein networkhttps://string-db.org/network/398580.Dshi_0578PFAM: peptidase M19 renal dipeptidase; NCBI conserved domains: rDP-like; low swissprot hit to Dipeptidase 1 precursor from Oryctolagus cuniculus; high Ref ZP hit to peptidase M19, renal dipeptida [...]
betT protein networkhttps://string-db.org/network/398580.Dshi_0579Choline-glycine betaine transporter; PFAM: BCCT transporter; NCBI conserved domains: COG1292, BetT, Choline-glycine betaine transporter and pfam02028, BCCT; good swissprot hit to Glycine betaine [...]
Dshi_0580 protein networkhttps://string-db.org/network/398580.Dshi_0580Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot, no conserved domains; high Ref ZP hit to hypothetical protein ROS217_07275 [Roseovarius sp. 217].
Dshi_0581 protein networkhttps://string-db.org/network/398580.Dshi_0581Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot, no conserved domains; middle Ref YP hit to hypothetical protein PFL_0797 [Pseudomonas fluorescens Pf-5].
Dshi_0582 protein networkhttps://string-db.org/network/398580.Dshi_0582Unsure GC frame plot, PFAM: Endoribonuclease L-PSP; NCBI conserved domains: cd02198, YjgH; low swissprot hit to UPF0076 protein HI1627 from Haemophilus influenzae; low Ref YP hit to yjgF family p [...]
kdsA protein networkhttps://string-db.org/network/398580.Dshi_0583TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase PFAM: DAHP synthetase I/KDSA; NCBI conserved domains: kdsA; high swissprot hit to 2-dehydro-3-deoxyphosphooctonate aldolase from Bradyrhizobium [...]
kpsE protein networkhttps://string-db.org/network/398580.Dshi_0584Capsule polysaccharide export; PFAM: lipopolysaccharide biosynthesis protein; NCBI conserved domains: COG3524, KpsE, Capsule polysaccharide export protein; middle swissprot hit to Capsule polysac [...]
kpsT protein networkhttps://string-db.org/network/398580.Dshi_0585Capsule polysaccharide export; PFAM: ABC transporter related; NCBI conserved domains: kpsT; good swissprot hit to Capsule polysaccharide export ATP-binding protein ctrD from Neisseria meningitidi [...]
kpsM protein networkhttps://string-db.org/network/398580.Dshi_0586Capsule polysaccharide transport; PFAM: permease; NCBI conserved domains: COG0701, Predicted permeases; no significant swissprot; high Ref ZP hit to permease, putative [Roseovarius nubinhibens IS [...]
Dshi_0587 protein networkhttps://string-db.org/network/398580.Dshi_0587Putative transcriptional regulator; SMART: regulatory protein ArsR; unsure GC frame plot; no significant swissprot; NCBI conserved domains: ArsR; middle Ref ZP hit to transcriptional regulator, A [...]
Dshi_0588 protein networkhttps://string-db.org/network/398580.Dshi_0588uracil-DNA glycosylase superfamily; Unsure GC frame plot; InterPro Scan results: SSF52141 UDNA_glycsylseSF; NCBI conserved domains: COG1573, Uracil-DNA glycosylase and pfam03167, UDG, Uracil DNA [...]
Dshi_0589 protein networkhttps://string-db.org/network/398580.Dshi_0589Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot; no conserved domains detected; high Ref ZP hit to hypothetical protein R2601_11544 [Roseovarius sp. HTCC2601].
Dshi_0590 protein networkhttps://string-db.org/network/398580.Dshi_0590PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; middle swissprot hit to Putative 2-hydroxyacid dehydrogenase ycdW from Escherichia coli K12; high Ref ZP hit to D-isomer specific [...]
mreD1 protein networkhttps://string-db.org/network/398580.Dshi_0591Rod shape-determining protein MreD; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
ftsI1 protein networkhttps://string-db.org/network/398580.Dshi_0592PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain, NCBI conserved domains: COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2; hi [...]
mreD2 protein networkhttps://string-db.org/network/398580.Dshi_0593Putative rod shape-determining protein MreD; No significant swissprot; no conserved domains, except from one signalpep. and four transmembr. regions; low Ref ZP hit to putative rod shape-determin [...]
mreC protein networkhttps://string-db.org/network/398580.Dshi_0594TIGRFAM: rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC; NCBI conserved domains: PRK10900, cell wall structural complex MreBCD transmembrane component MreC; low swiss [...]
mreB protein networkhttps://string-db.org/network/398580.Dshi_0595TIGRFAM: cell shape determining protein, MreB/Mrl family PFAM: cell shape determining protein MreB/Mrl; high swissprot hit to Rod shape-determining protein mreB from Escherichia coli K12; high Re [...]
leuA protein networkhttps://string-db.org/network/398580.Dshi_05962-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isoprop [...]
Dshi_0597 protein networkhttps://string-db.org/network/398580.Dshi_0597Conserved hypothetical protein; InterPro Scan: G3DSA:2.120.10.30 Six-bladed beta-propeller, TolB-like; NCBI conserved domains: COG3391, Uncharacterized conserved protein; no significant swissprot [...]
Dshi_0598 protein networkhttps://string-db.org/network/398580.Dshi_0598PFAM: short-chain dehydrogenase/reductase SDR; NCBI conserved domains: PRK09009, C factor cell-cell signaling protein and PRK06953, short chain dehydrogenase; low swissprot hit to C-factor (C sig [...]
Dshi_0599 protein networkhttps://string-db.org/network/398580.Dshi_0599PFAM: deoxyribodipyrimidine photolyase-related protein; NCBI conserved domains: pfam04244, DPRP, Deoxyribodipyrimidine photolyase-related protein and COG0415, PhrB, Deoxyribodipyrimidine photolya [...]
Dshi_0600 protein networkhttps://string-db.org/network/398580.Dshi_0600PFAM: MORN repeat-containing protein, NCBI conserved domains: several repeats of COG4642, Uncharacterized protein conserved in bacteria; low swissprot hit to Radial spoke head 10 homolog B from R [...]
nadE protein networkhttps://string-db.org/network/398580.Dshi_0601Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
Dshi_0603 protein networkhttps://string-db.org/network/398580.Dshi_0603PFAM: thioesterase superfamily protein, NCBI conserved domains: cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH) and cd03440, hot_dog; middle swissprot [...]
Dshi_0604 protein networkhttps://string-db.org/network/398580.Dshi_0604Amidohydrolase family protein; PFAM: amidohydrolase 2; CNBI conserved domains: cd01311, PDC_hydrolase, COG2159, Predicted metal-dependent hydrolase, no significant swissprot; unsure GC frame plot [...]
dctM5 protein networkhttps://string-db.org/network/398580.Dshi_0605TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; middle swissprot hit to Sialic acid TRAP transporter permease protein sia [...]
Dshi_0606 protein networkhttps://string-db.org/network/398580.Dshi_0606Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot, no conserved domains; low Ref ZP hit to TRAP transporter, transmembrane protein, putative [Roseovarius sp. HTCC2601 [...]
dctP5 protein networkhttps://string-db.org/network/398580.Dshi_0607PFAM: TRAP dicarboxylate transporter- DctP subunit; NCBI conserved domains: COG1638, DctP, TRAP-type C4-dicarboxylate transport system, periplasmic component; no significant swissprot; good Ref Z [...]
Dshi_0608 protein networkhttps://string-db.org/network/398580.Dshi_0608Hypothetical protein; Unsure GC frame plot; no significant swissprot; no conserved domains; low Ref YP hit to hypothetical protein TM1040_3278 [Silicibacter sp. TM1040].
Dshi_0609 protein networkhttps://string-db.org/network/398580.Dshi_0609Transcriptional regulator, GntR family with aminotransferase domain; Unsure GC frame plot; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SSF53383 Pyridoxal phosphate-depende [...]
Dshi_0610 protein networkhttps://string-db.org/network/398580.Dshi_0610Protein of unknown function DUF1445; Unsure GC frame plot, good swissprot hit to UPF0317 protein BP1875 from Bordetella pertussis; high gb hit to hypothetical protein HPDFL43_09917 [Hoeflea photo [...]
Dshi_0611 protein networkhttps://string-db.org/network/398580.Dshi_0611Unsure GC frame plot; PFAM: NIPSNAP family containing protein; NCBI conserved domains: NIPSNAP; bad swissprot hit to Protein NipSnap3A from Homo sapiens; low Ref YP hit to NIPSNAP family containi [...]
Dshi_0612 protein networkhttps://string-db.org/network/398580.Dshi_0612PFAM: beta-lactamase domain protein; NCBI conserved domains: COG0491, GloB, Zn-dependent hydrolases, including glyoxylases; no significant swissprot; high Ref ZP hit to metallo-beta-lactamase fam [...]
Dshi_0613 protein networkhttps://string-db.org/network/398580.Dshi_0613PFAM: band 7 protein; NCBI conserved domains: band_7 and COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs; good swissprot hit to Uncharacterized protein ybbK from Escherich [...]
Dshi_0614 protein networkhttps://string-db.org/network/398580.Dshi_0614Conserved hypothetical protein; PFAM01957 Nodulation efficiency, NfeD; no significant swissprot; low Ref YP hit to hypothetical protein Rsph17025_2810 [Rhodobacter sphaeroides ATCC 17025].
pyrF protein networkhttps://string-db.org/network/398580.Dshi_0615Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamil [...]
Dshi_0616 protein networkhttps://string-db.org/network/398580.Dshi_0616Hypothetical protein; Unsure GC frame plot, no significant BLAST hits; no conserved domains.
clpB protein networkhttps://string-db.org/network/398580.Dshi_0617Chaperone protein clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to t [...]
Dshi_0618 protein networkhttps://string-db.org/network/398580.Dshi_0618Conserved hypothetical protein; Unsure GC frame plot, no significant swissprot, no conserved domains (except from one signalpep. and two transmem. regions); middle gb hit to hypothetical protein [...]
Dshi_0619 protein networkhttps://string-db.org/network/398580.Dshi_0619Hypothetical protein; No significant swissprot, no conserved domains detected; bad Ref ZP hit to SNase-like nuclease [Roseobacter sp. AzwK-3b].
fabG2 protein networkhttps://string-db.org/network/398580.Dshi_0620PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NCBI conserved domains: fabG; middle swissprot hit to 3-oxoacyl-[acyl-carrier-protein] reductase from Chlamydia trachomatis; high [...]
Dshi_0621 protein networkhttps://string-db.org/network/398580.Dshi_0621PFAM02469 Fasciclin domain; NCBI conserved domains: COG2335, Secreted and surface protein containing fasciclin-like repeats; middle swissprot hit to Uncharacterized protein sll1483 precursor from [...]
Dshi_0622 protein networkhttps://string-db.org/network/398580.Dshi_0622PFAM02469 Fasciclin domain; NCBI conserved domains: COG2335, Secreted and surface protein containing fasciclin-like repeats; middle swissprot hit to Uncharacterized protein sll1483 precursor from [...]
yedY protein networkhttps://string-db.org/network/398580.Dshi_0623Oxidoreductase molybdopterin binding; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus [...]
yedZ protein networkhttps://string-db.org/network/398580.Dshi_0624Putative sulfite oxidase subunit YedZ; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thu [...]
Dshi_0625 protein networkhttps://string-db.org/network/398580.Dshi_0625Hypothetical protein; Unsure GC frame plot, no significant BLAST hits.
Dshi_0626 protein networkhttps://string-db.org/network/398580.Dshi_0626Basic organic compound ABC-transporter; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG4662, TupA, ABC-type tungstate transport system, per [...]
Dshi_0627 protein networkhttps://string-db.org/network/398580.Dshi_0627Basic organic compound ABC-transporter; PFAM: ABC transporter related SMART: AAA ATPase; NCBI conserved domains: cd03260, ABC_PstB_phosphate_transporter; middle swissprot hit to Phosphate import [...]
Dshi_0628 protein networkhttps://string-db.org/network/398580.Dshi_0628Basic organic compound ABC-transporter; PFAM: extracellular solute-binding protein family 1, NCBI conserved domains: tupB; no significant swissprot; high Ref ZP hit to sulfate/tungstate uptake fa [...]
Dshi_0629 protein networkhttps://string-db.org/network/398580.Dshi_0629Periplasmic substrate-binding protein; TIGRFAM: DNA binding domain, excisionase family, NCBI conserved domains: COG1910, Periplasmic molybdate-binding protein/domain; bad swissprot hit to Putativ [...]
glpD protein networkhttps://string-db.org/network/398580.Dshi_0630Glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; NCBI conserved domains: PRK12266, glpD, glycerol-3-phosphate dehydrogenase; high swissprot hit to Glycerol-3-phosphate dehy [...]
glpR protein networkhttps://string-db.org/network/398580.Dshi_0631Glycerol-3-phosphate regulon repressor; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein, NCBI conserved domains: COG1349, GlpR, Transcriptional regulators of sugar metaboli [...]
ackA protein networkhttps://string-db.org/network/398580.Dshi_0632Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
pta2 protein networkhttps://string-db.org/network/398580.Dshi_0633Swissprot: Phosphate acetyltransferase (Phosphotransacetylase) PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase KEGG: rpe:RPE_3163 phosphate butyryltransferase.
Dshi_0634 protein networkhttps://string-db.org/network/398580.Dshi_0634Hypothetical protein; No significant swissprot, no conserved domains; high gb hit to glycosyltransferase, putative [Roseobacter litoralis Och 149].
Dshi_0635 protein networkhttps://string-db.org/network/398580.Dshi_0635PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; low swissprot hit to Uncharacterized vacuolar memb [...]
Dshi_0636 protein networkhttps://string-db.org/network/398580.Dshi_0636PFAM: phospholipase/Carboxylesterase; NCBI conserved domains: COG0400, Predicted esterase; low swissprot hit to Acyl-protein thioesterase 1 from Yarrowia lipolytica; good gb hit to phospholipase/ [...]
Dshi_0637 protein networkhttps://string-db.org/network/398580.Dshi_0637PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; NCBI conserved domains: see PFAM result before; middle swissprot hit to Chlorohydroquinone/hydroquinone 1,2-dioxygenase from Sphingomona [...]
Dshi_0638 protein networkhttps://string-db.org/network/398580.Dshi_0638PFAM: ABC transporter related SMART: AAA ATPase; NCBI conserved domains: cd03265, ABC_DrrA; good swissprot hit to Uncharacterized ABC transporter ATP-binding protein yadG from Escherichia coli K1 [...]
Dshi_0639 protein networkhttps://string-db.org/network/398580.Dshi_0639PFAM: ABC-2 type transporter, NCBI conserved domains: COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component; good swissprot hit to Inner membrane transport pe [...]
Dshi_0640 protein networkhttps://string-db.org/network/398580.Dshi_0640PFAM: peptidase S49; NCBI conserved domains: COG0616, SppA; middle swissprot hit to Putative signal peptide peptidase sppA from Bacillus halodurans; high Ref ZP hit to peptidase S49 [Rhodobactera [...]
Dshi_0641 protein networkhttps://string-db.org/network/398580.Dshi_0641Hypothetical protein; No swissprot, no conserved domains, bad Ref ZP hit to hypothetical protein ISM_10031 [Roseovarius nubinhibens ISM].
Dshi_0642 protein networkhttps://string-db.org/network/398580.Dshi_0642TIGRFAM: Na+/Ca+ antiporter, CaCA family PFAM: sodium/calcium exchanger membrane region, NCBI conserved domains: COG0530, ECM27, Ca2+/Na+ antiporter; bad swissprot hit to Sodium/potassium/calcium [...]
Dshi_0643 protein networkhttps://string-db.org/network/398580.Dshi_0643PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NCBI conserved domains: PRK09134, short chain dehydrogenase; middle swissprot hit to 3-oxoacyl-[acyl-carrier-protein] reductase f [...]
uvrC protein networkhttps://string-db.org/network/398580.Dshi_0644Excinuclease ABC; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the [...]
Dshi_0645 protein networkhttps://string-db.org/network/398580.Dshi_0645TRAP-type uncharacterized transport system; TIGRFAM: TRAP transporter solute receptor, TAXI family; NCBI conserved domains: COG2358, Imp, TRAP-type uncharacterized transport system, periplasmic c [...]
Dshi_0646 protein networkhttps://string-db.org/network/398580.Dshi_0646TRAP-type uncharacterized transport system, fused permease components; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; NCBI [...]
Dshi_0647 protein networkhttps://string-db.org/network/398580.Dshi_0647Hypothetical protein; InterPro Scan: Integrin alpha N-terminal domain superfamily; no significant swissprot; low Ref ZP hit to hypothetical protein RED65_02278 [Oceanobacter sp. RED65].
recR protein networkhttps://string-db.org/network/398580.Dshi_0648Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
Dshi_0649 protein networkhttps://string-db.org/network/398580.Dshi_0649Conserved hypothetical protein DUF149; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
dnaX protein networkhttps://string-db.org/network/398580.Dshi_0650DNA polymerase III; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activi [...]
Dshi_0651 protein networkhttps://string-db.org/network/398580.Dshi_0651PFAM: NUDIX hydrolase; NADH pyrophosphatase-like; Zinc ribbon NADH pyrophosphatase; NCBI conserved domains: cd03429, NADH_pyrophosphatase; middle swissprot hit to NADH pyrophosphatase from Escher [...]
Dshi_0652 protein networkhttps://string-db.org/network/398580.Dshi_0652Conserved hypothetical protein; No significant swissprot; no conserved domains; low Ref ZP hit to hypothetical protein NAS141_10191 [Sulfitobacter sp. NAS-14.1].
pheA2 protein networkhttps://string-db.org/network/398580.Dshi_0653Bifunctional chorismate mutase/prephenate dehydratase; PFAM: prephenate dehydratase; NCBI conserved domains: pheA; middle swissprot hit to P-protein from Aquifex aeolicus; high Ref ZP hit to prep [...]
cycM protein networkhttps://string-db.org/network/398580.Dshi_0654PFAM: cytochrome c class I; NCBI conserved domains: pfam00034, Cytochrom_C; middle swissprot hit to Cytochrome c-552 from Paracoccus denitrificans; middle Ref ZP hit to cytochrome c552 [Roseobact [...]
oppA protein networkhttps://string-db.org/network/398580.Dshi_0655ABC peptide transporter; PFAM: extracellular solute-binding protein family 5; NCBI conserved domains: COG4166, OppA, ABC-type oligopeptide transport system; high swissprot hit to Uncharacterized [...]
oppBC1 protein networkhttps://string-db.org/network/398580.Dshi_0656ABC peptide transporter; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport system [...]
oppBC2 protein networkhttps://string-db.org/network/398580.Dshi_0657ABC peptide transporter; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport system [...]
oppDF protein networkhttps://string-db.org/network/398580.Dshi_0658PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; NCBI conserved domains: cd03257, ABC_NikE_OppD_transporters; high swissprot hit to Uncharacterized ABC transp [...]
hemN2 protein networkhttps://string-db.org/network/398580.Dshi_0659TIGRFAM: oxygen-independent coproporphyrinogen III oxidase PFAM: Radical SAM domain protein; HemN domain protein (same as NCBI conserved domains); high swissprot hit to Oxygen-independent copropo [...]
fixK protein networkhttps://string-db.org/network/398580.Dshi_0660PFAM: cyclic nucleotide-binding; regulatory protein Crp, NCBI conserved domains: PRK09391, fixK, transcriptional regulator FixK; high swissprot hit to Transcriptional activator protein fnrL from [...]
fixN protein networkhttps://string-db.org/network/398580.Dshi_0661TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I PFAM: cytochrome c oxidase subunit I; NCBI conserved domains: cd01661, cbb3_Oxidase_I; high swissprot hit to Cytochrome c oxidase subunit 1 hom [...]
fixO protein networkhttps://string-db.org/network/398580.Dshi_0662TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II PFAM: cytochrome C oxidase mono-heme subunit/FixO; NCBI conserved domains: fixO; no significant swissprot, high Ref ZP hit to cytochrome c oxi [...]
fixQ protein networkhttps://string-db.org/network/398580.Dshi_0663PFAM: Cbb3-type cytochrome oxidase component; NCBI conserved domains: fixQ; no significant swissprot hit; low Ref ZP hit to cytochrome c oxidase, cbb3-type, subunit IV [Loktanella vestfoldensis S [...]
fixP protein networkhttps://string-db.org/network/398580.Dshi_0664Cytochrome c oxidase; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
fixG protein networkhttps://string-db.org/network/398580.Dshi_0665Nitrogen fixation protein fixG; TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM00037 4Fe-4S binding domain; high swissprot hit to Nitrogen fixation protein fixG from Sinorhiz [...]
fixH protein networkhttps://string-db.org/network/398580.Dshi_0666PFAM: FixH family protein; NCBI conserved domains: fixH; low swissprot hit to Nitrogen fixation protein fixH from Sinorhizobium meliloti, middle Ref ZP hit to FixH [Silicibacter sp. TM1040].
fixI protein networkhttps://string-db.org/network/398580.Dshi_0667Nitrogen fixation protein fixI; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase PFAM: Haloacid d [...]
fixS protein networkhttps://string-db.org/network/398580.Dshi_0668Nitrogen fixation protein fixS; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type PFAM: cytochrome oxidase maturation protein cbb3-type; NCBI conserved domains: fixS, ccoS; low swissprot [...]
dacC2 protein networkhttps://string-db.org/network/398580.Dshi_0669PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; NCBI conserved domains: dacC; middle swissprot hit to D-alanyl-D-alanine carboxypeptidase dacC precursor from Escherichi [...]
Dshi_0670 protein networkhttps://string-db.org/network/398580.Dshi_0670Ibu; PFAM: Haloacid dehalogenase domain protein hydrolase; NCBI conserved domains: COG1011, Predicted hydrolase (HAD superfamily); bad swissprot hit to Uncharacterized HAD-hydrolase MTH_209 from [...]
rsmC protein networkhttps://string-db.org/network/398580.Dshi_0671PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; NCBI conserved domains: rsmC; low swissprot hit to Ribosomal RNA small subunit methyltransferase C from Escher [...]
Dshi_0672 protein networkhttps://string-db.org/network/398580.Dshi_0672PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; low swissprot hit to 7-alpha-hydroxysteroid dehydrogenase from Escherichia coli K12; high Ref ZP hit to 7-alpha-hydroxysteroid de [...]
Dshi_0673 protein networkhttps://string-db.org/network/398580.Dshi_0673Hypothetical protein; No significant swissprot, no conserved domains; bad Ref ZP hit to hypothetical protein RTM1035_19081 [Roseovarius sp. TM1035].
hemF protein networkhttps://string-db.org/network/398580.Dshi_0674Swissprot: Coproporphyrinogen 3 oxidase, aerobic PFAM: coproporphyrinogen III oxidase KEGG: sil:SPO3653 coproporphyrinogen III oxidase, aerobic; aerobic (Coproporphyrinogen III oxidase, aerobic) [...]
ggt2 protein networkhttps://string-db.org/network/398580.Dshi_0675TIGRFAM: gamma-glutamyltransferase PFAM: gamma-glutamyltranspeptidase; NCBI conserved domains: ggT; high swissprot hit to Gamma-glutamyltranspeptidase precursor from Escherichia coli K12; high Re [...]
Dshi_0676 protein networkhttps://string-db.org/network/398580.Dshi_0676PFAM: beta-lactamase; NCBI conserved domains: COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins; bad swissprot hit to Penicillin-binding protein 4* (PBP 4*) from Bacillu [...]
Dshi_0677 protein networkhttps://string-db.org/network/398580.Dshi_0677Conserved hypothetical protein; Pfam03567 Sulfotransferase; NCBI conserved domains: pfam03567; bad swissprot hit to Carbohydrate sulfotransferase 9 from Mus musculus; high Ref ZP hit to hypotheti [...]
Dshi_0678 protein networkhttps://string-db.org/network/398580.Dshi_0678PFAM: glycosyl transferase family 14; NCBI conserved domains: pfam02485, Branch, Core-2/I-Branching enzyme, pfam03267, DUF266, Domain of unknown function, bad swissprot hit to Xylosyltransferase [...]
Dshi_0679 protein networkhttps://string-db.org/network/398580.Dshi_0679PFAM: histidine triad (HIT) protein; NCBI conserved domains: cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI), COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase [...]
purK protein networkhttps://string-db.org/network/398580.Dshi_0680Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
purE protein networkhttps://string-db.org/network/398580.Dshi_0681Phosphoribosylaminoimidazole carboxylase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
Dshi_0682 protein networkhttps://string-db.org/network/398580.Dshi_0682PFAM: protein of unknown function DUF465; no significant swissprot; low Ref ZP hit to Protein of unknown function DUF465 [Paracoccus denitrificans PD1222].
ibpAB protein networkhttps://string-db.org/network/398580.Dshi_0683PFAM: heat shock protein Hsp20; NCBI conserved domains: ibpA; low swissprot hit to Small heat shock protein ibpA from Salmonella choleraesuis; good Ref YP hit to heat shock protein Hsp20 [Jannasc [...]
Dshi_0684 protein networkhttps://string-db.org/network/398580.Dshi_0684NCBI conserved domains: pfam06620 DUF1150, Protein of unknown function, COG5568, Uncharacterized small protein; no significant swissprot; low Ref ZP hit to hypothetical protein OB2597_07215 [Ocea [...]
apbE2 protein networkhttps://string-db.org/network/398580.Dshi_0685ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Be [...]
nosR1 protein networkhttps://string-db.org/network/398580.Dshi_0686InterPro Scan: PIRSF036354 nitrous oxide reductase expression regulator NosR; NCBI conserved domains: nosR; high swissprot hit to Regulatory protein nosR from Pseudomonas stutzeri; high Ref ZP hi [...]
Dshi_0687 protein networkhttps://string-db.org/network/398580.Dshi_0687Two-component system, permease component; PFAM: binding-protein-dependent transport systems inner membrane component; NCBI conserved domains: COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate [...]
Dshi_0688 protein networkhttps://string-db.org/network/398580.Dshi_0688PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NCBI conserved domains: PR [...]
prpB protein networkhttps://string-db.org/network/398580.Dshi_0689Methylisocitrate lyase; NCBI conserved domains: COG2513, PrpB, PEP phosphonomutase and related enzymes; PRK11320, prpB, 2-methylisocitrate lyase; middle swissprot hit to Methylisocitrate lyase fr [...]
entB protein networkhttps://string-db.org/network/398580.Dshi_0690PFAM: isochorismatase hydrolase; NCBI conserved domains: COG1535, EntB, Isochorismate hydrolase; low swissprot hit to Isochorismatase (Isochorismate lyase) from Escherichia coli K12; high Ref ZP [...]
hyuA protein networkhttps://string-db.org/network/398580.Dshi_0691PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; NCBI conserved domains: COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit; high swissprot hit to Hy [...]
hyuB protein networkhttps://string-db.org/network/398580.Dshi_0692PFAM: Hydantoinase B/oxoprolinase, NCBI conserved domains: COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit; good swissprot hit to Hydantoin utilization protein B from Pse [...]
pptA protein networkhttps://string-db.org/network/398580.Dshi_0693PFAM: 4-oxalocrotonate tautomerase; NCBI conserved domains: pfam01361, Tautomerase; no significant swissprot, good Ref ZP hit to tautomerase, putative [Loktanella vestfoldensis SKA53].
Dshi_0694 protein networkhttps://string-db.org/network/398580.Dshi_0694PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; NCBI conserved domains: pfam07702, UTRA; low swissprot hit to Uncharacterized HTH-type transcriptional r [...]
leuC protein networkhttps://string-db.org/network/398580.Dshi_06953-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
leuD protein networkhttps://string-db.org/network/398580.Dshi_06963-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. Le [...]
dctP1 protein networkhttps://string-db.org/network/398580.Dshi_0697PFAM: TRAP dicarboxylate transporter- DctP subunit, NCBI conserved domains: COG1638, DctP; bad swissprot hit to C4-dicarboxylate-binding periplasmic protein precursor from Rhodobacter capsulatus; [...]
dctQ3 protein networkhttps://string-db.org/network/398580.Dshi_0698TRAP dicarboxylate transporter- DctQ subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component, NCBI conserved domains: dctQ and dctM small permease component; no significa [...]
dctM1 protein networkhttps://string-db.org/network/398580.Dshi_0699PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; NCBI conserved domains: COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component a [...]
Dshi_0700 protein networkhttps://string-db.org/network/398580.Dshi_0700PFAM: AMP-dependent synthetase and ligase; NCBI conserved domains: COG0318, CaiC, Acyl-CoA synthetases (AMP-forming); middle swissprot hit to 2-succinylbenzoate--CoA ligase (OSB-CoA synthetase) f [...]
Dshi_0701 protein networkhttps://string-db.org/network/398580.Dshi_0701Methyltransferase domain protein; PFAM: Methyltransferase type 11; Methyltransferase type 12; NCBI conserved domains: COG2226, UbiE; no significant swissprot; middle Ref YP hit to Methyltransfera [...]
Dshi_0702 protein networkhttps://string-db.org/network/398580.Dshi_0702WbqC-like family protein; InterPro Scan and NCBI conserved domains: pfam08889, WbqC; no significant swissprot; low gb hit to WbnG [Shigella dysenteriae].
Dshi_0703 protein networkhttps://string-db.org/network/398580.Dshi_0703Hypothetical protein; NCBI conserved domains: pfam00535, Glycos_transf_2, Glycosyl transferase family 2; no significant swissprot; low Ref YP hit to hypothetical protein Rsph17025_3846 [Rhodobact [...]
Dshi_0704 protein networkhttps://string-db.org/network/398580.Dshi_0704PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class-III; NCBI conserved domains: pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family; COG0399, WecE, Predicted [...]
Dshi_0705 protein networkhttps://string-db.org/network/398580.Dshi_0705Hypothetical protein; NCBI conserved domains: COG4421, Capsular polysaccharide biosynthesis protein; no significant swissprot; low Ref ZP hit to Capsular polysaccharide biosynthesis protein-like [...]
Dshi_0707 protein networkhttps://string-db.org/network/398580.Dshi_0707Conserved hypothetical protein; NCBI conserved domains: cd00208, LbetaH, Left-Handed Parallel beta-Helix and COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]; low swissprot hit to UDP-3-O-[3-hydroxymy [...]
Dshi_0708 protein networkhttps://string-db.org/network/398580.Dshi_0708Conserved hypothetical protein; Unsure GC frame Plot, no conserved domains; no significant swissprot; middle Ref YP hit to hypothetical protein BTH_I3215 [Burkholderia thailandensis E264].
atoDA protein networkhttps://string-db.org/network/398580.Dshi_0709Acyl CoA:acetate/3-ketoacid CoA transferase, alpha and beta subunit; PFAM: coenzyme A transferase; NCBI conserved domains: atoDA; low swissprot hit to SCOT-S from Sus scrofa; high Ref ZP hit to C [...]
Dshi_0710 protein networkhttps://string-db.org/network/398580.Dshi_0710Conserved hypothetical protein; No significant swissprot; no conserved domains detected (except from one signalpep. and six transmembr. regions); middle Ref ZP hit to hypothetical protein RLO149_ [...]
Dshi_0711 protein networkhttps://string-db.org/network/398580.Dshi_0711PFAM: regulatory protein LysR; LysR substrate-binding (same as NCBI conserved domains); middle swissprot hit to Lysine export transcriptional regulatory protein lysG from Corynebacterium efficien [...]
lysE protein networkhttps://string-db.org/network/398580.Dshi_0712Lysine exporter protein; NCBI conserved domains: COG1279, Lysine efflux permease; pfam01810, LysE; middle swissprot hit to Putative amino-acid transporter yggA from Aeromonas salmonicida; good Re [...]
Dshi_0713 protein networkhttps://string-db.org/network/398580.Dshi_0713Poly(3-hydroxybutyrate) depolymerase-like protein; NCBI conserved domains: COG3509, LpqC; no significant swissprot; low REf YP hit to polyhydroxybutyrate depolymerase [Frankia sp. EAN1pec].
Dshi_0714 protein networkhttps://string-db.org/network/398580.Dshi_0714Protein of unknown function DUF6 transmembrane; NCBI conserved domains: pfam00892, DUF6, Integral membrane protein DUF6; COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfam [...]
Dshi_0715 protein networkhttps://string-db.org/network/398580.Dshi_0715PFAM04325 Protein of unknown function (DUF465); NCBI conserved domains: COG2841, Uncharacterized protein conserved in bacteria; no swissprot hit; low Ref YP hit to protein of unknown function DUF [...]
Dshi_0716 protein networkhttps://string-db.org/network/398580.Dshi_0716Transcriptional regulator; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; NCBI conserved domains: COG3800, Predicted transcriptional regulator; no significant swisspro [...]
Dshi_0717 protein networkhttps://string-db.org/network/398580.Dshi_0717Multidrug resistance protein; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily PFAM: major facilitator superfamily MFS_1, NCBI conserved domains: PRK11652, emrD, multidrug resistance prot [...]
pccB protein networkhttps://string-db.org/network/398580.Dshi_0718Carboxyl transferase; Probably a dodecamer composed of six biotin-containing alpha subunits and six beta subunits.
Dshi_0719 protein networkhttps://string-db.org/network/398580.Dshi_0719Conserved hypothetical protein.
Dshi_0720 protein networkhttps://string-db.org/network/398580.Dshi_0720Endoribonuclease L-PSP; Active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA.
Dshi_0721 protein networkhttps://string-db.org/network/398580.Dshi_0721Hypothetical protein; Weak similarity to genes in Rhodobacteraceae.
Dshi_0722 protein networkhttps://string-db.org/network/398580.Dshi_0722Conserved hypothetical protein; Conserved in Rhodobacteraceae and Bradyrhizobiaceae.
pccA protein networkhttps://string-db.org/network/398580.Dshi_0723Carbamoyl-phosphate synthase L chain ATP-binding; Biotin-dependent enzyme, Probably a dodecamer composed of six biotin-containing alpha subunits and six beta subunits.
Dshi_0724 protein networkhttps://string-db.org/network/398580.Dshi_0724Conserved hypothetical protein.
Dshi_0725 protein networkhttps://string-db.org/network/398580.Dshi_0725Conserved hypothetical protein.
bhbA protein networkhttps://string-db.org/network/398580.Dshi_0726methylmalonyl-CoA mutase, large subunit; Catalyzes the interconversion of succinyl-CoA and methylmalonyl-CoA during the polyhydroxyalkanoate degradation pathway. cobalamin-dependent, homodimer.
Dshi_0727 protein networkhttps://string-db.org/network/398580.Dshi_0727Transcriptional regulator; HTH and substrate binding domain; LysR family; Belongs to the LysR transcriptional regulatory family.
mnhA protein networkhttps://string-db.org/network/398580.Dshi_0728Quinone dependent NADH dehydrogenase.
mnhB protein networkhttps://string-db.org/network/398580.Dshi_0729Na+/H+ antiporter MnhB subunit-related protein.
mnhC protein networkhttps://string-db.org/network/398580.Dshi_0730NADH-ubiquinone oxidoreductase chain 4L.
mnhD protein networkhttps://string-db.org/network/398580.Dshi_0731Quinone dependent NADH dehydrogenase.
mnhE protein networkhttps://string-db.org/network/398580.Dshi_0732Cation antiporter; Members of the PhaE/MrpE family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaE is part of a potassium efflu [...]
mnhF protein networkhttps://string-db.org/network/398580.Dshi_0733Multiple resistance and pH regulation protein F; Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. Pha [...]
mnhG protein networkhttps://string-db.org/network/398580.Dshi_0734Monovalent cation/proton antiporter; Family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphyloco [...]
Dshi_0735 protein networkhttps://string-db.org/network/398580.Dshi_0735Conserved hypothetical protein.
Dshi_0736 protein networkhttps://string-db.org/network/398580.Dshi_0736GCN5-related N-acetyltransferase; Protein N-Acetyl-transferase.
Dshi_0737 protein networkhttps://string-db.org/network/398580.Dshi_0737Heat shock protein DnaJ domain protein.
Dshi_0738 protein networkhttps://string-db.org/network/398580.Dshi_0738Conserved hypothetical protein.
ppx protein networkhttps://string-db.org/network/398580.Dshi_0739Ppx/GppA phosphatase; This family consists of the N-terminal region of exopolyphosphatase (Ppx) and guanosine pentaphosphate phospho-hydrolase (GppA).
ppk1 protein networkhttps://string-db.org/network/398580.Dshi_0740Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
Dshi_0741 protein networkhttps://string-db.org/network/398580.Dshi_0741Chromosomal replication initiator; Weak evidence for predicted function; DnaA.
Dshi_0742 protein networkhttps://string-db.org/network/398580.Dshi_0742Protein of unknown function UPF0118; Predicted transmembrane protein (10TMH).
mcsS protein networkhttps://string-db.org/network/398580.Dshi_0743Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation.
proS protein networkhttps://string-db.org/network/398580.Dshi_0744prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRN [...]
Dshi_0745 protein networkhttps://string-db.org/network/398580.Dshi_0745Redoxin domain protein; This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.
aqpZ protein networkhttps://string-db.org/network/398580.Dshi_0746MIP family channel protein; Transport of water across the membrane; Belongs to the MIP/aquaporin (TC 1.A.8) family.
lolC protein networkhttps://string-db.org/network/398580.Dshi_0747Lipoprotein releasing system; Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane; transmembrane protein, [...]
lolD protein networkhttps://string-db.org/network/398580.Dshi_0748ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaper [...]
parE protein networkhttps://string-db.org/network/398580.Dshi_0749DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circul [...]
Dshi_0750 protein networkhttps://string-db.org/network/398580.Dshi_0750Conserved hypothetical protein.
ppk2 protein networkhttps://string-db.org/network/398580.Dshi_0751Protein of unknown function DUF344; Protein with ppk2 Domain, cytoplasmatic.
Dshi_0752 protein networkhttps://string-db.org/network/398580.Dshi_0752Protein of unknown function DUF1007; Contains DUF1007 domain.
nicO protein networkhttps://string-db.org/network/398580.Dshi_0753High-affinity nickel-transporter; Incorporation of nickel into H2-uptake hydrogenase and urease, signal peptide cleveage after AA 22, inner membrane; Belongs to the NiCoT transporter (TC 2.A.52) [...]
Dshi_0754 protein networkhttps://string-db.org/network/398580.Dshi_0754Methyltransferase type 11; SAM-dependent methyltransferase, Substrate not known KEGG: rsp:RSP_0765 SAM-dependent methyltransferase.
Dshi_0755 protein networkhttps://string-db.org/network/398580.Dshi_0755MATE efflux family protein.
Dshi_0756 protein networkhttps://string-db.org/network/398580.Dshi_0756Conserved hypothetical protein.
Dshi_0757 protein networkhttps://string-db.org/network/398580.Dshi_0757Selenium-binding protein.
Dshi_0758 protein networkhttps://string-db.org/network/398580.Dshi_0758Transcriptional regulator; MarR family.
Dshi_0759 protein networkhttps://string-db.org/network/398580.Dshi_0759Conserved hypothetical protein.
Dshi_0760 protein networkhttps://string-db.org/network/398580.Dshi_0760Hypothetical protein.
Dshi_0761 protein networkhttps://string-db.org/network/398580.Dshi_0761Conserved hypothetical protein; Conserved in Rhodobacteraceae.
aspC protein networkhttps://string-db.org/network/398580.Dshi_0762Contains Aminotransferase class I and II domain.
Dshi_0763 protein networkhttps://string-db.org/network/398580.Dshi_0763Transcriptional regulator; Helix-Turn-Helix motif; XRE family.
Dshi_0764 protein networkhttps://string-db.org/network/398580.Dshi_0764Protein of unknown function DUF339.
Dshi_0765 protein networkhttps://string-db.org/network/398580.Dshi_0765Transcriptional regulator; HTH domain; MarR family.
Dshi_0766 protein networkhttps://string-db.org/network/398580.Dshi_0766Protein of unknown function DUF1194; Putative lipoprotein.
Dshi_0767 protein networkhttps://string-db.org/network/398580.Dshi_0767Glyoxalase/bleomycin resistance protein/dioxygenase; Lactoylglutathione lyase.
thyX protein networkhttps://string-db.org/network/398580.Dshi_0768Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate ( [...]
csp1 protein networkhttps://string-db.org/network/398580.Dshi_0769CSD(cold shock DNA-binding) domain containing Protein, binds single stranded DNA, 4 homologs in E. coli cspABCD.
Dshi_0770 protein networkhttps://string-db.org/network/398580.Dshi_0770Arsenate reductase and related; Conserved arsC domain; Belongs to the ArsC family.
Dshi_0771 protein networkhttps://string-db.org/network/398580.Dshi_0771DoxX family protein.
Dshi_0772 protein networkhttps://string-db.org/network/398580.Dshi_0772Conserved hypothetical protein.
Dshi_0773 protein networkhttps://string-db.org/network/398580.Dshi_0773Protein of unknown function DUF692; Belongs to the UPF0276 family.
Dshi_0774 protein networkhttps://string-db.org/network/398580.Dshi_0774Predicted inner membrane protein, conserved in Rhodobacteraceae.
ttuC protein networkhttps://string-db.org/network/398580.Dshi_0775Tartrate dehydrogenase; Multiple catalytic activities: EC:1.1.1.93: Tartrate + NAD(+) <=> oxaloglycolate + NADH; EC:4.1.1.73: (R,R)-tartrate <=> D-glycerate + CO2; EC:1.1.1.83: (R)-malate + NAD(+ [...]
Dshi_0776 protein networkhttps://string-db.org/network/398580.Dshi_0776Cobalamin B12-binding domain protein; Similar to ppaA in the photosynthetic gene cluster, cytosolic.
thrS protein networkhttps://string-db.org/network/398580.Dshi_0777threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor en [...]
Dshi_0778 protein networkhttps://string-db.org/network/398580.Dshi_0778Conserved hypothetical protein.
Dshi_0779 protein networkhttps://string-db.org/network/398580.Dshi_0779Transcriptional regulator; Protein with 2 functional domains: MarR and acetyltransferase (GNAT); MarR family with acetyltransferase activity.
Dshi_0780 protein networkhttps://string-db.org/network/398580.Dshi_0780Hydrolase, alpha/beta fold motiv with catalytic triade.
Dshi_0781 protein networkhttps://string-db.org/network/398580.Dshi_0781Sterol-binding domain protein; Contains SCP-2 sterol transfer family domain.
Dshi_0782 protein networkhttps://string-db.org/network/398580.Dshi_0782Putative Tetratricopeptide TPR_2 repeat protein.
Dshi_0783 protein networkhttps://string-db.org/network/398580.Dshi_0783Contains Helicase domain.
Dshi_0784 protein networkhttps://string-db.org/network/398580.Dshi_0784RNA-binding S4.
fdxA protein networkhttps://string-db.org/network/398580.Dshi_07854Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
Dshi_0786 protein networkhttps://string-db.org/network/398580.Dshi_0786Transcriptional regulator; Similar to N-terminus of M. xanthus carD protein; CarD family.
cobS1 protein networkhttps://string-db.org/network/398580.Dshi_0787Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylco [...]
cobT2 protein networkhttps://string-db.org/network/398580.Dshi_0788Nicotinate-nucleotide-- dimethylbenzimidazolephosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole [...]
kefC protein networkhttps://string-db.org/network/398580.Dshi_0789Potassium efflux system protein; Glutathione regulated, K+/H+ antiporter, NAD-binding domain; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
Dshi_0790 protein networkhttps://string-db.org/network/398580.Dshi_0790Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_0791 protein networkhttps://string-db.org/network/398580.Dshi_0791Protein of unknown function DUF541, bacterial membrane or periplasm protein.
Dshi_0792 protein networkhttps://string-db.org/network/398580.Dshi_0792Conserved hypothetical protein.
metB2 protein networkhttps://string-db.org/network/398580.Dshi_0793O-acetylhomoserine/O-acetylserine sulfhydrylase; PLP-dependent, Reaction: O-Acetyl-L-homoserine + Methanethiol <=> L-Methionine + Acetate, Also reacts with other thiols and H2S, producing homocys [...]
hisB protein networkhttps://string-db.org/network/398580.Dshi_0794Imidazoleglycerol-phosphate dehydratase; Histidine metabolism, Reaction: D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate <=> 3-(Imidazol-4-yl)-2-oxopropyl phosphate + H2O.
hisH protein networkhttps://string-db.org/network/398580.Dshi_0795Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and am [...]
argF protein networkhttps://string-db.org/network/398580.Dshi_0796Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
Dshi_0797 protein networkhttps://string-db.org/network/398580.Dshi_0797Weakly conserved GCN5-related N-acetyltransferase, possibly EC:3.5.1.16.
argD protein networkhttps://string-db.org/network/398580.Dshi_0798Pyridoxalphosphate-dependent aminotransferase classIII, Reaction: N-Acetylornithine + 2-Oxoglutarate <=> N-Acetyl-L-glutamate-5-semialdehyde + L-glutamate; N2-Succinyl-L-ornithine + 2-Oxoglutarat [...]
Dshi_0799 protein networkhttps://string-db.org/network/398580.Dshi_0799Putative DNA-binding protein.
Dshi_0800 protein networkhttps://string-db.org/network/398580.Dshi_0800Transcriptional regulator; Helix-Turn-Helix motiv, iclR subfamily; IclR family.
Dshi_0801 protein networkhttps://string-db.org/network/398580.Dshi_0801TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP gene cluster - dctPQM.
Dshi_0802 protein networkhttps://string-db.org/network/398580.Dshi_0802Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM.
Dshi_0803 protein networkhttps://string-db.org/network/398580.Dshi_0803TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
Dshi_0804 protein networkhttps://string-db.org/network/398580.Dshi_0804Contains N- and C-terminal GMC-oxidoreductase domain, FAD-binding.
Dshi_0805 protein networkhttps://string-db.org/network/398580.Dshi_0805Contains central C- and N-terminal Thiamine pyrophosphate-binding domain; Reaction: Sulfoacetaldehyde + Orthophosphate <=> Acetyl phosphate + Sulfite; Belongs to the TPP enzyme family.
tauZ protein networkhttps://string-db.org/network/398580.Dshi_0806Conserved hypothetical protein; 9 potential transmembrane domains.
Dshi_0807 protein networkhttps://string-db.org/network/398580.Dshi_0807Hypothetical protein.
mipA protein networkhttps://string-db.org/network/398580.Dshi_0808MltA-interacting MipA family protein; Integrates membrane bound lytic transglycosylase and penicillin-binding protein into a complex.
lepA protein networkhttps://string-db.org/network/398580.Dshi_0809GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codo [...]
Dshi_0810 protein networkhttps://string-db.org/network/398580.Dshi_0810Conserved hypothetical protein.
Dshi_0811 protein networkhttps://string-db.org/network/398580.Dshi_0811Conserved hypothetical protein.
Dshi_0812 protein networkhttps://string-db.org/network/398580.Dshi_0812Transcriptional regulator; TraR/DksA family.
Dshi_0813 protein networkhttps://string-db.org/network/398580.Dshi_0813Conserved hypothetical protein; 2 predicted transmembrane domains.
Dshi_0814 protein networkhttps://string-db.org/network/398580.Dshi_0814Conserved hypothetical protein; Conserved in Rhodobacteraceae and Bradyrhizobiaceae.
Dshi_0815 protein networkhttps://string-db.org/network/398580.Dshi_0815Glyoxalase/bleomycin resistance protein/dioxygenase; Catalyzes the first step of the glyoxal pathway.
Dshi_0816 protein networkhttps://string-db.org/network/398580.Dshi_0816Conserved hypothetical protein.
Dshi_0817 protein networkhttps://string-db.org/network/398580.Dshi_0817Hypothetical protein.
Dshi_0818 protein networkhttps://string-db.org/network/398580.Dshi_0818Hypothetical protein.
Dshi_0819 protein networkhttps://string-db.org/network/398580.Dshi_0819Hypothetical protein.
Dshi_0820 protein networkhttps://string-db.org/network/398580.Dshi_0820Hydrolase, alpha/beta fold motif with catalytic triade.
glyA2 protein networkhttps://string-db.org/network/398580.Dshi_0821Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major s [...]
ppnK protein networkhttps://string-db.org/network/398580.Dshi_0822NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl [...]
Dshi_0823 protein networkhttps://string-db.org/network/398580.Dshi_0823Transcriptional regulater, ATP dependent Sigma54 interaction, part of two component system; Fis family.
Dshi_0824 protein networkhttps://string-db.org/network/398580.Dshi_0824Histidine kinase; C-Terminal domain of arcB (aerobic respiration control), no PAS domain (sensor).
Dshi_0825 protein networkhttps://string-db.org/network/398580.Dshi_0825AMP-binding domain, ligase similar to propionate-CoA and Acetyl-CoA ligase.
Dshi_0826 protein networkhttps://string-db.org/network/398580.Dshi_0826Malic protein NAD-binding; Malate decarboxylase, NAD(P) dependent(two forms of the enzyme with different kinetics), Reaction: (S)-malate + NAD+ = pyruvate + CO2 + NADH.
cdd protein networkhttps://string-db.org/network/398580.Dshi_0827Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
deoA protein networkhttps://string-db.org/network/398580.Dshi_0828Pyrimidine-nucleoside phosphorylase; The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization [...]
deoB protein networkhttps://string-db.org/network/398580.Dshi_0829Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
add protein networkhttps://string-db.org/network/398580.Dshi_0830Adenosine deaminase; Acting on carbon-nitrogen bonds, other than peptide bonds, Reaction: Adenosine + H2O <=> Inosine + NH3.
upp protein networkhttps://string-db.org/network/398580.Dshi_0831Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
Dshi_0832 protein networkhttps://string-db.org/network/398580.Dshi_0832Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_0833 protein networkhttps://string-db.org/network/398580.Dshi_0833AMP-dependent synthetase and ligase; Putative Acyl-CoA-Ligase (inferred from Swiss-Prot).
Dshi_0834 protein networkhttps://string-db.org/network/398580.Dshi_0834Protein of unknown function DUF6 transmembrane; Contains 1 N-terminal DUF6-domain.
fadJ protein networkhttps://string-db.org/network/398580.Dshi_08353-hydroxyacyl-CoA dehydrogenase NAD-binding; Multifunctional enzyme: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase, Reaction: (3S)-3-Hydroxyacyl-CoA <=> trans-2,3-Dehydroacyl-CoA + H2O, Reac [...]
fadA protein networkhttps://string-db.org/network/398580.Dshi_0836Thiolase, Reaction: acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA; Belongs to the thiolase-like superfamily. Thiolase family.
Dshi_0837 protein networkhttps://string-db.org/network/398580.Dshi_0837Glutathione S-transferase domain protein; Not all GST-like proteins show catalytic activity; Belongs to the GST superfamily.
Dshi_0838 protein networkhttps://string-db.org/network/398580.Dshi_0838Contains all Acyl-CoA dehydrogenase domains; Reaction: Acyl-CoA + Acceptor <=> 2,3-Dehydroacyl-CoA + Reduced acceptor.
Dshi_0839 protein networkhttps://string-db.org/network/398580.Dshi_0839acyl-CoA dehydrogenase domain protein; Oxidoreductase acting on the CH-CH group of donors with other acceptors.
Dshi_0840 protein networkhttps://string-db.org/network/398580.Dshi_0840Transcriptional regulator; Contains winged helix DNA-binding motif; MerR family.
Dshi_0842 protein networkhttps://string-db.org/network/398580.Dshi_0842Transcriptional regulator; Contains winged helix DNA-binding motif; MerR family.
Dshi_0843 protein networkhttps://string-db.org/network/398580.Dshi_0843Thioesterase superfamily protein.
Dshi_0844 protein networkhttps://string-db.org/network/398580.Dshi_0844Thioesterase superfamily protein.
Dshi_0845 protein networkhttps://string-db.org/network/398580.Dshi_0845MATE efflux family protein; Contains two multi antimicrobial extrusion (MATE) domains, drug/sodium antiporter.
arsC protein networkhttps://string-db.org/network/398580.Dshi_0846Arsenate reductase; Related to glutaredoxins, Reaction: Arsenate ion + Glutaredoxin <=> Arsenite + Glutaredoxin disulfide.
pyrD2 protein networkhttps://string-db.org/network/398580.Dshi_0847Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
Dshi_0848 protein networkhttps://string-db.org/network/398580.Dshi_0848Hypothetical bacterial and plant proteins of unknown function.
Dshi_0849 protein networkhttps://string-db.org/network/398580.Dshi_08495'-Nucleotidase domain protein; Membrane bound, hydrolyzes extracellular nucleotides into membrane permeable nucleosides, Reaction: 5-Ribonucleotide + H2O <=> Ribonucleoside + Orthophosphate; Bel [...]
deaD protein networkhttps://string-db.org/network/398580.Dshi_0850DEAD/DEAH box helicase domain protein; He DEAD box helicases are involved in various aspects of RNA metabolism; Belongs to the DEAD box helicase family.
Dshi_0851 protein networkhttps://string-db.org/network/398580.Dshi_0851Protein of unknown function DUF159; Contains DUF159 domain; Belongs to the SOS response-associated peptidase family.
msbA protein networkhttps://string-db.org/network/398580.Dshi_0852Lipid A ABC exporter family; ABC transporter with fused ATPase and inner membrane subunits, Involved in lipid A export and inner membrane biogenesis; fused ATPase and inner membrane subunits.
fadD2 protein networkhttps://string-db.org/network/398580.Dshi_0853AMP-dependent synthetase and ligase; Esterification and transport of exogeneous long chain fatty acids, Reaction: ATP + a long-chain carboxylic acid + CoA <=> AMP + diphosphate + an acyl-CoA.
Dshi_0854 protein networkhttps://string-db.org/network/398580.Dshi_0854Hypothetical protein.
Dshi_0855 protein networkhttps://string-db.org/network/398580.Dshi_0855Transglutaminase domain protein; Belongs to class of conserved hypothetical proteins with N-terminal transglutaminse domain, catalytic activity not proofed.
Dshi_0856 protein networkhttps://string-db.org/network/398580.Dshi_0856Protein of unknown function DUF404; Contains DUF404, 407, 403 domains.
Dshi_0857 protein networkhttps://string-db.org/network/398580.Dshi_0857Transglutaminase domain protein; Belongs to clas of conserved hypothetical proteins with N-terminal transglutaminse domain, catalytic activity not proofed.
Dshi_0858 protein networkhttps://string-db.org/network/398580.Dshi_0858ABC transporter (importer) gene cluster: 2nd ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_0859 protein networkhttps://string-db.org/network/398580.Dshi_0859ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_0860 protein networkhttps://string-db.org/network/398580.Dshi_0860Inner-membrane translocator; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system perme [...]
Dshi_0861 protein networkhttps://string-db.org/network/398580.Dshi_0861Inner-membrane translocator; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system perme [...]
Dshi_0862 protein networkhttps://string-db.org/network/398580.Dshi_0862Extracellular ligand-binding receptor; ABC transporter (importer) gene cluster: receptor.
Dshi_0863 protein networkhttps://string-db.org/network/398580.Dshi_0863Transcriptional regulator; Helix-turn-helix DNA-binding motif; AsnC family.
Dshi_0864 protein networkhttps://string-db.org/network/398580.Dshi_0864(2Fe-2S)-binding domain protein; Putative oxidoreductase.
Dshi_0865 protein networkhttps://string-db.org/network/398580.Dshi_0865Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; Function not clear, similar to several Swiss-Prot curated proteins.
Dshi_0866 protein networkhttps://string-db.org/network/398580.Dshi_0866Hydrolase, alpha/beta fold motiv with catalytic triade, weak evidence.
Dshi_0867 protein networkhttps://string-db.org/network/398580.Dshi_0867Contains amidohydrolase 2 domain.
Dshi_0868 protein networkhttps://string-db.org/network/398580.Dshi_0868Peptidase related (trEMBL).
Dshi_0869 protein networkhttps://string-db.org/network/398580.Dshi_0869Conserved hypothetical protein; Phosphoesterase related (trEMBL).
Dshi_0870 protein networkhttps://string-db.org/network/398580.Dshi_0870Weak similarity to transcriptional regulator, SARP family, TPR repeats; SARP family.
Dshi_0871 protein networkhttps://string-db.org/network/398580.Dshi_0871Hypothetical protein.
Dshi_0872 protein networkhttps://string-db.org/network/398580.Dshi_0872Extracellular solute-binding protein family 5; ABC transporter (importer) gene cluster: receptor (cluster disrupted).
Dshi_0873 protein networkhttps://string-db.org/network/398580.Dshi_0873Hypothetical protein.
Dshi_0874 protein networkhttps://string-db.org/network/398580.Dshi_0874Extracellular solute-binding protein; Part of extracellular ligand-binding receptor; family 5.
Dshi_0875 protein networkhttps://string-db.org/network/398580.Dshi_0875Transposase IS3/IS911 family protein.
Dshi_0876 protein networkhttps://string-db.org/network/398580.Dshi_0876Integrase catalytic region.
Dshi_0877 protein networkhttps://string-db.org/network/398580.Dshi_08774-phytase; ABC transporter (importer) gene cluster: receptor, N-terminal truncated.
Dshi_0878 protein networkhttps://string-db.org/network/398580.Dshi_0878Hypothetical protein.
Dshi_0879 protein networkhttps://string-db.org/network/398580.Dshi_0879Membrane protein-like protein.
Dshi_0880 protein networkhttps://string-db.org/network/398580.Dshi_0880Hydratase/decarboxylase; Involved in the bacterial meta-cleavage pathways for degradation of aromatic compounds.
Dshi_0881 protein networkhttps://string-db.org/network/398580.Dshi_0881Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0882 protein networkhttps://string-db.org/network/398580.Dshi_0882Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0883 protein networkhttps://string-db.org/network/398580.Dshi_0883Hypothetical protein.
Dshi_0884 protein networkhttps://string-db.org/network/398580.Dshi_0884ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer; ATPase subunit; Belongs to the ABC transporter superfamily.
Dshi_0885 protein networkhttps://string-db.org/network/398580.Dshi_0885ABC transporter (importer) gene cluster: 2nd ATP binding cassette (ABC) domain; part of a heterotetramer; ATPase subunit; Belongs to the ABC transporter superfamily.
Dshi_0886 protein networkhttps://string-db.org/network/398580.Dshi_0886Transcriptional regulator; Helix-Turn-Helix motif, iclR subfamily; IclR family.
sgaA2 protein networkhttps://string-db.org/network/398580.Dshi_0887Serine--glyoxylate transaminase; PLP-dependent enzyme, Reaction: L-serine + glyoxylate <=> 3-hydroxypyruvate + glycine.
Dshi_0888 protein networkhttps://string-db.org/network/398580.Dshi_0888Pyridoxal-5'-phosphate-dependent protein beta subunit; PLP dependnet enzyme, catalytic activity not clear, Swiss-Prot hits to serine racemase, threonine dehydratase.
Dshi_0889 protein networkhttps://string-db.org/network/398580.Dshi_0889Contains N-terminal domain of alanine racemase, C-terminal domain missing.
Dshi_0890 protein networkhttps://string-db.org/network/398580.Dshi_0890Catalyses the deamination of ornithine to proline, Reaction: L-Ornithine <=> L-Proline + NH3.
cysK protein networkhttps://string-db.org/network/398580.Dshi_0891Cysteine synthase A; PLP-dependent Enzyme, Reaction: O-Acetyl-L-serine + Hydrogen sulfide <=> L-Cysteine + Acetate.
Dshi_0892 protein networkhttps://string-db.org/network/398580.Dshi_0892Transposase IS4 family protein.
Dshi_0893 protein networkhttps://string-db.org/network/398580.Dshi_0893Peptidoglycan-binding domain 1 protein; Inner membrane protein.
Dshi_0894 protein networkhttps://string-db.org/network/398580.Dshi_0894Peptidoglycan-binding domain 1 protein; Inner membrane protein.
Dshi_0895 protein networkhttps://string-db.org/network/398580.Dshi_0895Peptidase S1 and S6 chymotrypsin/Hap.
Dshi_0896 protein networkhttps://string-db.org/network/398580.Dshi_0896Conserved hypothetical protein.
Dshi_0897 protein networkhttps://string-db.org/network/398580.Dshi_0897Virulence protein SrfB; Salmonella: activated by the global signal transduction/regulatory system SsrA/B, when in eukaryotic cells.
Dshi_0898 protein networkhttps://string-db.org/network/398580.Dshi_0898Conserved hypothetical protein.
Dshi_0899 protein networkhttps://string-db.org/network/398580.Dshi_0899Conserved hypothetical protein.
Dshi_0900 protein networkhttps://string-db.org/network/398580.Dshi_0900Conserved hypothetical protein.
Dshi_0901 protein networkhttps://string-db.org/network/398580.Dshi_0901ABC transporter (importer) gene cluster (disrupted): ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_0902 protein networkhttps://string-db.org/network/398580.Dshi_0902Protein of unknown function DUF214; ABC transporter (importer) gene cluster (disrupted): membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0903 protein networkhttps://string-db.org/network/398580.Dshi_0903Conserved hypothetical protein.
Dshi_0904 protein networkhttps://string-db.org/network/398580.Dshi_0904Conserved hypothetical protein; Conserved only in R. denitrificans.
Dshi_0905 protein networkhttps://string-db.org/network/398580.Dshi_0905Membrane protein, contains a pair of UPF0126 domains.
Dshi_0906 protein networkhttps://string-db.org/network/398580.Dshi_0906Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0907 protein networkhttps://string-db.org/network/398580.Dshi_0907ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_0908 protein networkhttps://string-db.org/network/398580.Dshi_0908Transcriptional activator; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belo [...]
Dshi_0909 protein networkhttps://string-db.org/network/398580.Dshi_0909NMT1/THI5 like domain protein; ABC transporter (importer) gene cluster: receptor, NMT1/THI5 like domain, involved in Thiamine biosynthesis.
thiF protein networkhttps://string-db.org/network/398580.Dshi_0910UBA/THIF-type NAD/FAD binding protein; Contains thiF and MoeZ/B-domain.
thiE protein networkhttps://string-db.org/network/398580.Dshi_0911Thiamine-phosphate diphosphorylase; Magnesium dependent, Reaction: 2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-Methyl-5-(2-phosphoethyl)-thiazole <=> Pyrophosphate + Thiaminmonopho [...]
thiG protein networkhttps://string-db.org/network/398580.Dshi_0912Thiazole biosynthesis family protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarbo [...]
Dshi_0913 protein networkhttps://string-db.org/network/398580.Dshi_0913Thiamine biosynthesis protein ThiS; Involved in sulphur transfer.
thiO protein networkhttps://string-db.org/network/398580.Dshi_0914Glycine oxidase ThiO; FAD dependent oxidoreductase, active with glycine, sarcosine, N-ethylglycine, D-alanine, D-alpha-aminobutyrate, D-proline, D-pipecolate and N-methyl-D-alanine.
thiD protein networkhttps://string-db.org/network/398580.Dshi_0915Phosphomethylpyrimidine kinase; Cofactor biosynthesis, Reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine <=> ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine.
Dshi_0916 protein networkhttps://string-db.org/network/398580.Dshi_0916RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; RND family, MFP subunit; Belongs to the m [...]
Dshi_0917 protein networkhttps://string-db.org/network/398580.Dshi_0917Acriflavin resistance protein; RND transporters are involved in multidrug resistance, heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; Belongs to th [...]
Dshi_0918 protein networkhttps://string-db.org/network/398580.Dshi_0918Auxin efflux carrier; Belongs to a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea.
Dshi_0919 protein networkhttps://string-db.org/network/398580.Dshi_0919Beta-lactamase domain protein; Metallo-beta-lactamase superfamily, apart from the beta-lactamases a number of other proteins contain this domain.
Dshi_0920 protein networkhttps://string-db.org/network/398580.Dshi_0920Hydrolase; Related to a large superfamily of metalloenzymes, TatD, a member of this family has been shown experimentally to be a DNase enzyme; TatD family.
Dshi_0921 protein networkhttps://string-db.org/network/398580.Dshi_0921DNA polymerase III, subunit.
tmk protein networkhttps://string-db.org/network/398580.Dshi_0922dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
dacC1 protein networkhttps://string-db.org/network/398580.Dshi_0923Serine-type D-Ala-D-Ala carboxypeptidase; Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors, Preferential cleavage: (Ac)2-L-Lys-D-Ala-D-Ala; Belongs to the peptidase S1 [...]
Dshi_0924 protein networkhttps://string-db.org/network/398580.Dshi_0924Sporulation domain protein; Contains SPOR domain, involved in binding peptidoglycan.
Dshi_0925 protein networkhttps://string-db.org/network/398580.Dshi_0925Conserved hypothetical protein; Weak conservation; Belongs to the peptidase S24 family.
Dshi_0926 protein networkhttps://string-db.org/network/398580.Dshi_0926Integrase catalytic region.
Dshi_0927 protein networkhttps://string-db.org/network/398580.Dshi_0927Transposase IS3/IS911 family protein.
Dshi_0928 protein networkhttps://string-db.org/network/398580.Dshi_0928Conserved hypothetical protein; Inner membrane protein.
Dshi_0929 protein networkhttps://string-db.org/network/398580.Dshi_0929Contains 2 UspA domains, expression is enhanced when the cell is exposed to stress agents, enhances the rate of cell survival during prolonged exposure to such conditions.
Dshi_0930 protein networkhttps://string-db.org/network/398580.Dshi_0930Sodium/hydrogen exchanger; Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC [...]
adhA protein networkhttps://string-db.org/network/398580.Dshi_0931Alcohol dehydrogenase GroES domain protein; Zinc-containing alcohol dehydrogenase family, Reaction: An alcohol + NAD+ <=> an aldehyde or ketone + NADH.
Dshi_0932 protein networkhttps://string-db.org/network/398580.Dshi_0932ATPase; Members of this ATPase-family are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport; P-type (transporting), HAD superfamily, subfamily IC.
Dshi_0933 protein networkhttps://string-db.org/network/398580.Dshi_0933Weak evidence for function as DNA binding domain, excisionase family; excisionase family.
Dshi_0934 protein networkhttps://string-db.org/network/398580.Dshi_0934Transposase IS3/IS911 family protein.
Dshi_0935 protein networkhttps://string-db.org/network/398580.Dshi_0935Hypothetical protein.
Dshi_0936 protein networkhttps://string-db.org/network/398580.Dshi_0936Sulfatase; Exported or inner-membrane bound, catalyzes hydrolization of sulfate from organic compounds.
Dshi_0937 protein networkhttps://string-db.org/network/398580.Dshi_0937Hypothetical protein.
Dshi_0938 protein networkhttps://string-db.org/network/398580.Dshi_0938Transcriptional regulator; Helix-turn-helix DNA-binding motif; AraC family.
Dshi_0939 protein networkhttps://string-db.org/network/398580.Dshi_093928aa of a transposase orfA IS5 family element (normally about 100-120aa).
Dshi_0940 protein networkhttps://string-db.org/network/398580.Dshi_0940Hypothetical protein.
Dshi_0941 protein networkhttps://string-db.org/network/398580.Dshi_0941Conserved hypothetical protein.
Dshi_0942 protein networkhttps://string-db.org/network/398580.Dshi_0942Members of the M23 peptidase family are zinc-metallopeptidases, most are endopeptidases, inner membrane location: possible function as cell wall peptidase.
Dshi_0943 protein networkhttps://string-db.org/network/398580.Dshi_0943Abortive infection protein; Contains CAAX amino terminal protease domain.
Dshi_0944 protein networkhttps://string-db.org/network/398580.Dshi_0944Putative transmembrane protein (PSORT).
Dshi_0945 protein networkhttps://string-db.org/network/398580.Dshi_0945Contains C-terminal putative peptidoglycan-binding domain, found in metalloproteases, N-terminus not characterized.
Dshi_0946 protein networkhttps://string-db.org/network/398580.Dshi_0946Conserved hypothetical protein; Conserved in bacteria.
pthA protein networkhttps://string-db.org/network/398580.Dshi_0947aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
lldD2 protein networkhttps://string-db.org/network/398580.Dshi_0948FMN-dependent dehydrogenase, Reaction: (S)-lactate + 2 ferricytochrome c <=> pyruvate + 2 ferrocytochrome c + 2 H+; cytochrome.
Dshi_0949 protein networkhttps://string-db.org/network/398580.Dshi_0949Conserved hypothetical protein.
rplY protein networkhttps://string-db.org/network/398580.Dshi_0950Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacteria [...]
Dshi_0951 protein networkhttps://string-db.org/network/398580.Dshi_0951Conserved hypothetical protein.
trpA protein networkhttps://string-db.org/network/398580.Dshi_0952Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
Dshi_0953 protein networkhttps://string-db.org/network/398580.Dshi_0953MATE efflux family protein; Contains two multi antimicrobial extrusion (MATE) domains, drug/sodium antiporter.
engD protein networkhttps://string-db.org/network/398580.Dshi_0954GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
Dshi_0955 protein networkhttps://string-db.org/network/398580.Dshi_0955Similar to predicted racemases.
Dshi_0956 protein networkhttps://string-db.org/network/398580.Dshi_0956TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
Dshi_0957 protein networkhttps://string-db.org/network/398580.Dshi_0957Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM.
Dshi_0958 protein networkhttps://string-db.org/network/398580.Dshi_0958TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctP subunit.
Dshi_0959 protein networkhttps://string-db.org/network/398580.Dshi_0959Transcriptional regulator; Helix-turn-helix DNA-binding motif, SIS domain, found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; RpiR family.
Dshi_0960 protein networkhttps://string-db.org/network/398580.Dshi_0960Transcriptional regulator; N-terminal HTH region, C-terminal FCD effector binding domain; GntR family.
Dshi_0961 protein networkhttps://string-db.org/network/398580.Dshi_0961Catechol dioxygenase domain protein; C-terminal domain is missing, probable pseudogene.
Dshi_0964 protein networkhttps://string-db.org/network/398580.Dshi_0964Hypothetical protein.
Dshi_0965 protein networkhttps://string-db.org/network/398580.Dshi_0965Hypothetical protein.
Dshi_0967 protein networkhttps://string-db.org/network/398580.Dshi_0967Fumarylacetoacetate (FAA) hydrolase; FAA is the last enzyme in the tyrosine catabolic pathway.
Dshi_0968 protein networkhttps://string-db.org/network/398580.Dshi_0968YCII-related; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat.
mtlK protein networkhttps://string-db.org/network/398580.Dshi_0969Mannitol dehydrogenase domain protein; Reaction: D-mannitol + NAD+ <=> D-fructose + NADH.
Dshi_0970 protein networkhttps://string-db.org/network/398580.Dshi_0970Short-chain dehydrogenase/reductase SDR; N-terminal truncated.
Dshi_0971 protein networkhttps://string-db.org/network/398580.Dshi_0971ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer, no second ABC domain protein, single TOBE domain.
Dshi_0972 protein networkhttps://string-db.org/network/398580.Dshi_0972Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0973 protein networkhttps://string-db.org/network/398580.Dshi_0973Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_0974 protein networkhttps://string-db.org/network/398580.Dshi_0974Extracellular solute-binding protein family 1; ABC transporter (importer) gene cluster: receptor.
Dshi_0975 protein networkhttps://string-db.org/network/398580.Dshi_0975Transcriptional regulator; LacI family.
Dshi_0976 protein networkhttps://string-db.org/network/398580.Dshi_0976Resolvase-like protein.
murA protein networkhttps://string-db.org/network/398580.Dshi_0977UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
Dshi_0978 protein networkhttps://string-db.org/network/398580.Dshi_0978Conserved hypothetical protein; Conserved in alphaproteobacteria.
hisD1 protein networkhttps://string-db.org/network/398580.Dshi_0979Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
Dshi_0980 protein networkhttps://string-db.org/network/398580.Dshi_0980Conserved hypothetical protein; Belongs to the UPF0262 family.
Dshi_0981 protein networkhttps://string-db.org/network/398580.Dshi_0981Function not clear, homology to protein tyrosine phosphatase and arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
infA protein networkhttps://string-db.org/network/398580.Dshi_0982Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl- [...]
Dshi_0983 protein networkhttps://string-db.org/network/398580.Dshi_0983Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into ce [...]
Dshi_0984 protein networkhttps://string-db.org/network/398580.Dshi_0984Ribonuclease G and E-like family.
Dshi_0985 protein networkhttps://string-db.org/network/398580.Dshi_0985Hypothetical protein.
Dshi_0986 protein networkhttps://string-db.org/network/398580.Dshi_0986Helix-turn-helix domain protein; DNA-binding, putative transcriptional regulator.
Dshi_0987 protein networkhttps://string-db.org/network/398580.Dshi_0987Conserved hypothetical protein; Conserved in bacteria.
Dshi_0988 protein networkhttps://string-db.org/network/398580.Dshi_0988Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end [...]
Dshi_0989 protein networkhttps://string-db.org/network/398580.Dshi_0989Conserved hypothetical protein.
Dshi_0990 protein networkhttps://string-db.org/network/398580.Dshi_0990Putative DNA helicase related protein.
Dshi_0991 protein networkhttps://string-db.org/network/398580.Dshi_0991Conserved hypothetical protein.
Dshi_0992 protein networkhttps://string-db.org/network/398580.Dshi_0992Type III restriction protein res subunit; Protects the organism against invading foreign DNA, part of a heteromeric enzyme complex, mod (modification methyltransferase)subunit is missing.
Dshi_0993 protein networkhttps://string-db.org/network/398580.Dshi_0993TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
Dshi_0994 protein networkhttps://string-db.org/network/398580.Dshi_0994TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
Dshi_0995 protein networkhttps://string-db.org/network/398580.Dshi_0995Transcriptional regulator; Contains substrate binding domain, putative homotetramer; LysR family; Belongs to the LysR transcriptional regulatory family.
Dshi_0996 protein networkhttps://string-db.org/network/398580.Dshi_0996NADH/Ubiquinone/plastoquinone; Subunit of NADH dehydrogenase, electron transport chain(ETC) complex I.
Dshi_0997 protein networkhttps://string-db.org/network/398580.Dshi_0997Conserved hypothetical protein; Putative inner membrane protein; Belongs to the UPF0753 family.
ade protein networkhttps://string-db.org/network/398580.Dshi_0998Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source, Reaction: Adenine + H2O <=> hypoxanthine + NH3, Manganese dependent; Belongs to the met [...]
Dshi_0999 protein networkhttps://string-db.org/network/398580.Dshi_0999Bile acid:sodium symporter; Found both in prokaryotes and eukaryotes; related to the human bile acid:sodium symporters; transmembrane proteins.
fadD4 protein networkhttps://string-db.org/network/398580.Dshi_1000AMP-dependent synthetase and ligase; Esterification and transport of exogeneous long chain fatty acids, Reaction: ATP + a long-chain carboxylic acid + CoA <=> AMP + diphosphate + an acyl-CoA.
serA2 protein networkhttps://string-db.org/network/398580.Dshi_1001D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; NAD-binding, Reaction: 2-hydroxyglutarate + NAD+ <=> 2-oxoglutarate + NADH; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase [...]
metB1 protein networkhttps://string-db.org/network/398580.Dshi_1002Cystathionine gamma-synthase; PLP-dependent enzyme, Methionine metabolism, Reaction: O4-succinyl-L-homoserine + L-cysteine <=> L-cystathionine + succinate.
Dshi_1003 protein networkhttps://string-db.org/network/398580.Dshi_1003Aminoglycoside phosphotransferase; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides.
Dshi_1004 protein networkhttps://string-db.org/network/398580.Dshi_1004acyl-CoA dehydrogenase domain protein; Contains middle and C-terminal domain, N-terminal domain not conserved.
Dshi_1005 protein networkhttps://string-db.org/network/398580.Dshi_1005Putative ribonuclease BN; This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation. This f [...]
Dshi_1006 protein networkhttps://string-db.org/network/398580.Dshi_1006Major facilitator superfamily MFS_1; The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients, similar t [...]
catD protein networkhttps://string-db.org/network/398580.Dshi_1007Reaction: 3-oxoadipate enol-lactone + H2O = 3-oxoadipate.
fabI1 protein networkhttps://string-db.org/network/398580.Dshi_1008Enoyl-(acyl-carrier-protein) reductase; Substrate: acyl-carrier-protein (ACP), Reaction: Acyl-ACP + NAD+ = trans-2,3-dehydroacyl-ACP + NADH.
fabB protein networkhttps://string-db.org/network/398580.Dshi_1009Beta-ketoacyl synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsat [...]
fabA protein networkhttps://string-db.org/network/398580.Dshi_1010Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-de [...]
fur protein networkhttps://string-db.org/network/398580.Dshi_1011Fur family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes; Fur family.
metK protein networkhttps://string-db.org/network/398580.Dshi_1012Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet format [...]
lnt protein networkhttps://string-db.org/network/398580.Dshi_1013Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrol [...]
Dshi_1014 protein networkhttps://string-db.org/network/398580.Dshi_1014CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet.
ybeY protein networkhttps://string-db.org/network/398580.Dshi_1015Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
Dshi_1016 protein networkhttps://string-db.org/network/398580.Dshi_1016PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
hemB2 protein networkhttps://string-db.org/network/398580.Dshi_1017TonB-dependent heme/hemoglobin receptor family protein; Fur family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive g [...]
Dshi_1018 protein networkhttps://string-db.org/network/398580.Dshi_1018Putative inner membrane protein.
miaB protein networkhttps://string-db.org/network/398580.Dshi_1019RNA modification enzyme; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 i [...]
Dshi_1020 protein networkhttps://string-db.org/network/398580.Dshi_1020Conserved hypothetical protein.
trmB protein networkhttps://string-db.org/network/398580.Dshi_1021tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
aroA protein networkhttps://string-db.org/network/398580.Dshi_10223-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl [...]
cmk protein networkhttps://string-db.org/network/398580.Dshi_1023Cytidylate kinase EC:2.7.4.14 catalyses the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5-diphosphate (dCDP) in the presence of ATP or GTP, Reaction: ATP + (d)CMP <=> ADP + (d) [...]
Dshi_1024 protein networkhttps://string-db.org/network/398580.Dshi_1024Histone family protein nucleoid-structuring protein H-NS; Involved in formation of nucleoid structure and affects gene expression, similar to Rba. capsulatus Puf and Puh operon regulator hvrA.
rpsA protein networkhttps://string-db.org/network/398580.Dshi_1025Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
Dshi_1026 protein networkhttps://string-db.org/network/398580.Dshi_1026Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
ihfB protein networkhttps://string-db.org/network/398580.Dshi_1027Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in tra [...]
Dshi_1028 protein networkhttps://string-db.org/network/398580.Dshi_1028Conserved hypothetical protein; Conserved in Rhodobacteraceae.
trpF protein networkhttps://string-db.org/network/398580.Dshi_1029Phosphoribosylanthranilate isomerase; Tryptophan biosynthesis, Reaction: N-(5-phospho-beta-D-ribosyl)anthranilate <=> 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate; Belongs to the TrpF [...]
Dshi_1030 protein networkhttps://string-db.org/network/398580.Dshi_1030Conserved hypothetical protein.
trpB protein networkhttps://string-db.org/network/398580.Dshi_1031Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
Dshi_1032 protein networkhttps://string-db.org/network/398580.Dshi_1032Hypothetical protein; Structure: signal peptide, Poly-DDR-repeat domain.
Dshi_1033 protein networkhttps://string-db.org/network/398580.Dshi_1033Hypothetical protein; Structure: signal peptide, Poly-DDR-repeat domain.
Dshi_1034 protein networkhttps://string-db.org/network/398580.Dshi_1034Transcriptional regulator; C-terminal LuxR Helix-Turn-helix motif; LuxR family.
Dshi_1035 protein networkhttps://string-db.org/network/398580.Dshi_1035TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
Dshi_1036 protein networkhttps://string-db.org/network/398580.Dshi_1036Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM.
Dshi_1037 protein networkhttps://string-db.org/network/398580.Dshi_1037TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
Dshi_1038 protein networkhttps://string-db.org/network/398580.Dshi_1038Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan.
Dshi_1039 protein networkhttps://string-db.org/network/398580.Dshi_1039Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molec [...]
Dshi_1040 protein networkhttps://string-db.org/network/398580.Dshi_1040Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; High similarity to predicted Carbon-monoxide dehydrogenase proteins.
Dshi_1041 protein networkhttps://string-db.org/network/398580.Dshi_1041TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
Dshi_1042 protein networkhttps://string-db.org/network/398580.Dshi_1042Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM.
Dshi_1043 protein networkhttps://string-db.org/network/398580.Dshi_1043TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
Dshi_1044 protein networkhttps://string-db.org/network/398580.Dshi_1044Transcriptional regulator; N-terminal HTH region, C-terminal FCD effector binding domain; GntR family.
Dshi_1045 protein networkhttps://string-db.org/network/398580.Dshi_1045HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
Dshi_1046 protein networkhttps://string-db.org/network/398580.Dshi_1046Amidase; Contains Amidase signature (AS) motif, AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2).
Dshi_1047 protein networkhttps://string-db.org/network/398580.Dshi_1047Conserved hypothetical protein.
Dshi_1048 protein networkhttps://string-db.org/network/398580.Dshi_1048Enoyl-CoA hydratase and 3-2trans-enoyl-CoA isomerase are two enzymes involved in fatty acid metabolism; Belongs to the enoyl-CoA hydratase/isomerase family.
Dshi_1049 protein networkhttps://string-db.org/network/398580.Dshi_1049Short-chain dehydrogenase/reductase SDR; Large family of oxidoreductases; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
Dshi_1050 protein networkhttps://string-db.org/network/398580.Dshi_1050Conserved hypothetical protein.
Dshi_1051 protein networkhttps://string-db.org/network/398580.Dshi_1051MmgE/PrpD family protein; This family includes 2-methylcitrate dehydratase (PrpD) that is required for propionate catabolism. It catalyses the third step of the 2-methylcitric acid cycle.
Dshi_1052 protein networkhttps://string-db.org/network/398580.Dshi_1052Spermidine/putrescine-binding periplasmic protein-like protein; ABC transporter (importer) gene cluster: receptor.
Dshi_1053 protein networkhttps://string-db.org/network/398580.Dshi_1053Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1054 protein networkhttps://string-db.org/network/398580.Dshi_1054Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1055 protein networkhttps://string-db.org/network/398580.Dshi_1055ABC transporter (importer) gene cluster (disrupted): ATP binding cassette (ABC) domain; part of a heterotetramer; Belongs to the ABC transporter superfamily.
Dshi_1056 protein networkhttps://string-db.org/network/398580.Dshi_1056Polysaccharide deacetylase.
Dshi_1057 protein networkhttps://string-db.org/network/398580.Dshi_1057L-carnitine dehydratase/bile acid-inducible protein F; Family III CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-speci [...]
Dshi_1058 protein networkhttps://string-db.org/network/398580.Dshi_1058acyl-CoA dehydrogenase domain protein; N-terminal, middle and C-terminal domain, Oxidoreductase acting on the CH-CH group of donors with other acceptors.
Dshi_1059 protein networkhttps://string-db.org/network/398580.Dshi_1059Hypothetical protein.
Dshi_1060 protein networkhttps://string-db.org/network/398580.Dshi_1060Hypothetical protein.
Dshi_1061 protein networkhttps://string-db.org/network/398580.Dshi_1061Hypothetical protein.
Dshi_1062 protein networkhttps://string-db.org/network/398580.Dshi_1062Isoprenylcysteine carboxyl methyltransferase; High similarity to cobalt-zinc-cadmium resistance protein czcN, but no other czc genes in genome, inner membrane protein.
Dshi_1063 protein networkhttps://string-db.org/network/398580.Dshi_1063Protein of unknown function DUF1289.
rufX protein networkhttps://string-db.org/network/398580.Dshi_1064Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
Dshi_1065 protein networkhttps://string-db.org/network/398580.Dshi_1065Hypothetical protein.
Dshi_1066 protein networkhttps://string-db.org/network/398580.Dshi_1066Hypothetical protein.
sod protein networkhttps://string-db.org/network/398580.Dshi_1067Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
Dshi_1068 protein networkhttps://string-db.org/network/398580.Dshi_1068Hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1069 protein networkhttps://string-db.org/network/398580.Dshi_1069Fe-S metabolism associated SufE; This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export.
Dshi_1070 protein networkhttps://string-db.org/network/398580.Dshi_1070Conserved hypothetical protein.
Dshi_1071 protein networkhttps://string-db.org/network/398580.Dshi_1071Protein of unknown function DUF74; Belongs to the UPF0145 family.
Dshi_1072 protein networkhttps://string-db.org/network/398580.Dshi_1072Hypothetical protein.
Dshi_1073 protein networkhttps://string-db.org/network/398580.Dshi_1073Methionine synthase; Contains B12-binding domain, enzymatic domain not present.
Dshi_1074 protein networkhttps://string-db.org/network/398580.Dshi_1074Belongs to a family of related homocysteine S-methyltransferases enzymes, probable Cobalamin dependent (2500131095).
Dshi_1075 protein networkhttps://string-db.org/network/398580.Dshi_1075Protein of unknown function DUF1476.
purC protein networkhttps://string-db.org/network/398580.Dshi_1076Phosphoribosylaminoimidazole- succinocarboxamidesynthase; Purine nucleotid biosynthesis, Reaction: ATP + 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate = ADP + phosphate + ( [...]
purS protein networkhttps://string-db.org/network/398580.Dshi_1077Phosphoribosylformylglycinamidine synthase; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of [...]
Dshi_1078 protein networkhttps://string-db.org/network/398580.Dshi_1078Alcohol dehydrogenase zinc-binding domain protein; Reaction: An alcohol + NAD+ = an aldehyde or ketone + NADH.
purQ protein networkhttps://string-db.org/network/398580.Dshi_1079Phosphoribosylformylglycinamidine synthase I; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion o [...]
Dshi_1080 protein networkhttps://string-db.org/network/398580.Dshi_1080Integral membrane bound sensor histidine kinase, similar to C4-dicarboxylate transport sensor protein dctB.
Dshi_1081 protein networkhttps://string-db.org/network/398580.Dshi_1081Two component; Sigma54 specific, similar to C4-dicarboxylate transport transcriptional regulatory protein dctD; sigma54 specific, transcriptional regulator, Fis family.
ate protein networkhttps://string-db.org/network/398580.Dshi_1082Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or g [...]
Dshi_1083 protein networkhttps://string-db.org/network/398580.Dshi_1083Two transmembrane domains, RDD domain.
Dshi_1084 protein networkhttps://string-db.org/network/398580.Dshi_1084Conserved hypothetical protein.
Dshi_1085 protein networkhttps://string-db.org/network/398580.Dshi_1085YbaK/prolyl-tRNA synthetase associated domain of unknown funktion.
Dshi_1086 protein networkhttps://string-db.org/network/398580.Dshi_1086Hypothetical protein.
Dshi_1087 protein networkhttps://string-db.org/network/398580.Dshi_1087TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
Dshi_1088 protein networkhttps://string-db.org/network/398580.Dshi_1088TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
Dshi_1089 protein networkhttps://string-db.org/network/398580.Dshi_1089TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
Dshi_1090 protein networkhttps://string-db.org/network/398580.Dshi_1090Tripartite ATP-independent periplasmic transporter DctQ component; TRAP gene cluster - dctPQM.
Dshi_1091 protein networkhttps://string-db.org/network/398580.Dshi_1091TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
Dshi_1092 protein networkhttps://string-db.org/network/398580.Dshi_1092Carboxyvinyl-carboxyphosphonatephosphorylmutase; Reaction: 1-Carboxyvinyl carboxyphosphonate <=> 3-(Hydrohydroxyphosphoryl)pyruvate + CO2.
Dshi_1093 protein networkhttps://string-db.org/network/398580.Dshi_1093Hypothetical protein.
Dshi_1094 protein networkhttps://string-db.org/network/398580.Dshi_1094Transcriptional regulator; Domains: GAF (present in phytochromes and cGMP-specific phosphodiesterases), FIS; Fis family.
Dshi_1095 protein networkhttps://string-db.org/network/398580.Dshi_1095Reaction: An aldehyde + NAD+ + H2O = an acid + NADH; Belongs to the aldehyde dehydrogenase family.
Dshi_1096 protein networkhttps://string-db.org/network/398580.Dshi_1096Lipolytic enzyme; Putative GDSL-like lipase; G-D-S-L.
Dshi_1097 protein networkhttps://string-db.org/network/398580.Dshi_1097Protein of unknown function DUF395 YeeE/YedE; Two YeeE/YedE-domains.
Dshi_1098 protein networkhttps://string-db.org/network/398580.Dshi_1098Major facilitator superfamily MFS_1; Inner membrane single-polypeptide secondary carrier.
msrA2 protein networkhttps://string-db.org/network/398580.Dshi_1099Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methioni [...]
prmA protein networkhttps://string-db.org/network/398580.Dshi_1100Ribosomal L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
Dshi_1101 protein networkhttps://string-db.org/network/398580.Dshi_1101Hypothetical protein.
Dshi_1102 protein networkhttps://string-db.org/network/398580.Dshi_1102Protein of unknown function DUF1127.
rufC protein networkhttps://string-db.org/network/398580.Dshi_1103Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to st [...]
rufA protein networkhttps://string-db.org/network/398580.Dshi_1104Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand [...]
rufB protein networkhttps://string-db.org/network/398580.Dshi_1105Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand [...]
Dshi_1106 protein networkhttps://string-db.org/network/398580.Dshi_1106Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1107 protein networkhttps://string-db.org/network/398580.Dshi_1107Pol-Pal system-associated acyl-CoA thioesterase; The significance of this thioesterase to the tol-pal system is unclear.
tolQ protein networkhttps://string-db.org/network/398580.Dshi_1108Tol-Pal system TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
tolR protein networkhttps://string-db.org/network/398580.Dshi_1109Biopolymer transport TolR; Outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal.
tolA protein networkhttps://string-db.org/network/398580.Dshi_1110Conserved hypothetical protein; Outer membrane integrity and transport system Tol-Pal: TolQRAB-Pal.
tolB protein networkhttps://string-db.org/network/398580.Dshi_1111Tol-Pal system beta propeller repeat TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integ [...]
pal protein networkhttps://string-db.org/network/398580.Dshi_1112Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
cpoB protein networkhttps://string-db.org/network/398580.Dshi_1113Tol-Pal system YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
tilS protein networkhttps://string-db.org/network/398580.Dshi_1114tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is [...]
ftsH protein networkhttps://string-db.org/network/398580.Dshi_1115ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane [...]
Dshi_1116 protein networkhttps://string-db.org/network/398580.Dshi_1116Hypothetical protein.
Dshi_1117 protein networkhttps://string-db.org/network/398580.Dshi_1117Thioesterase superfamily protein.
Dshi_1118 protein networkhttps://string-db.org/network/398580.Dshi_1118Conserved hypothetical protein.
Dshi_1119 protein networkhttps://string-db.org/network/398580.Dshi_1119Contains DEAD/H associated domain.
Dshi_1120 protein networkhttps://string-db.org/network/398580.Dshi_1120Conserved hypothetical protein.
Dshi_1121 protein networkhttps://string-db.org/network/398580.Dshi_1121Peptidase A24A prepilin type IV.
Dshi_1122 protein networkhttps://string-db.org/network/398580.Dshi_1122Tetratricopeptide region.
Dshi_1123 protein networkhttps://string-db.org/network/398580.Dshi_1123Tetratricopeptide TPR_2 repeat protein; Contains 2 TPR domains, involved in protein-protein interaction.
Dshi_1124 protein networkhttps://string-db.org/network/398580.Dshi_1124Type II secretion system protein.
Dshi_1125 protein networkhttps://string-db.org/network/398580.Dshi_1125Type II secretion system protein.
Dshi_1126 protein networkhttps://string-db.org/network/398580.Dshi_1126Type II secretion system protein E.
Dshi_1127 protein networkhttps://string-db.org/network/398580.Dshi_1127Response regulator receiver protein.
Dshi_1128 protein networkhttps://string-db.org/network/398580.Dshi_1128OmpA/MotB domain protein; It can function as an adhesin and invasin, participate in biofilm formation, act as both an immune target and evasin, and serves as a receptor for several bacteriophages [...]
Dshi_1129 protein networkhttps://string-db.org/network/398580.Dshi_1129Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
Dshi_1130 protein networkhttps://string-db.org/network/398580.Dshi_1130Domains: SAF.
Dshi_1131 protein networkhttps://string-db.org/network/398580.Dshi_1131Hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1132 protein networkhttps://string-db.org/network/398580.Dshi_1132Hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1133 protein networkhttps://string-db.org/network/398580.Dshi_1133Lytic transglycosylase catalytic; Found in phages, type II, type III and type IV secretion systems.
Dshi_1134 protein networkhttps://string-db.org/network/398580.Dshi_11343-oxoacid CoA-transferase, B subunit; Reaction: Succinyl-CoA + a 3-oxo acid <=> succinate + a 3-oxoacyl-CoA.
Dshi_1135 protein networkhttps://string-db.org/network/398580.Dshi_1135Putative signal transduction histidine kinase; Contains putative PAS photoreceptor domain.
Dshi_1136 protein networkhttps://string-db.org/network/398580.Dshi_11363-oxoacid CoA-transferase, A subunit; Reaction: Succinyl-CoA + a 3-oxo acid <=> succinate + a 3-oxoacyl-CoA.
topA protein networkhttps://string-db.org/network/398580.Dshi_1137DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of [...]
Dshi_1138 protein networkhttps://string-db.org/network/398580.Dshi_1138DNA protecting protein DprA; Required to protect incoming ssDNA from immediate degradation.
tldD protein networkhttps://string-db.org/network/398580.Dshi_1139Peptidase U62 modulator of DNA gyrase; Suppresses the inhibitory activity of the carbon storage regulator.
ctaC protein networkhttps://string-db.org/network/398580.Dshi_1140Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear cent [...]
ctaB protein networkhttps://string-db.org/network/398580.Dshi_1141Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs [...]
Dshi_1142 protein networkhttps://string-db.org/network/398580.Dshi_1142Hypothetical protein.
ctaG protein networkhttps://string-db.org/network/398580.Dshi_1143Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subu [...]
ctaE protein networkhttps://string-db.org/network/398580.Dshi_1144Cytochrome c oxidase subunit III; Part of oligomeric enzyme complex in the electron transport chain, subunit I and III form the catalytic active compound.
Dshi_1145 protein networkhttps://string-db.org/network/398580.Dshi_1145Conserved hypothetical protein; Similar to SURF1 protein, involved in cox complex assembly.
thrC protein networkhttps://string-db.org/network/398580.Dshi_1146Threonine synthase; PLP-dependent enzyme, Reaction: O-phospho-L-homoserine + H2O <=> L-threonine + phosphate.
Dshi_1147 protein networkhttps://string-db.org/network/398580.Dshi_1147Processing peptidase; Uncharacterized zinc protease M16 family; Belongs to the peptidase M16 family.
Dshi_1148 protein networkhttps://string-db.org/network/398580.Dshi_1148GCN5-related N-acetyltransferase; Protein N-Acetyl-transferase.
infC protein networkhttps://string-db.org/network/398580.Dshi_1149Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enha [...]
Dshi_1150 protein networkhttps://string-db.org/network/398580.Dshi_1150ferredoxin--NADP(+) reductase; Reaction: 2 reduced ferredoxin + NADP+ <=> 2 oxidized ferredoxin + NADPH.
Dshi_1151 protein networkhttps://string-db.org/network/398580.Dshi_1151Conserved hypothetical protein; Conserved in bacteria.
cysH protein networkhttps://string-db.org/network/398580.Dshi_1152Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
cysI protein networkhttps://string-db.org/network/398580.Dshi_1153Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; Catalyseses the six-electron reduction of sulphite to sulphide.
Dshi_1154 protein networkhttps://string-db.org/network/398580.Dshi_1154Conserved hypothetical protein; Conserved in Alphaproteobacteria.
Dshi_1155 protein networkhttps://string-db.org/network/398580.Dshi_1155uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. The [...]
Dshi_1156 protein networkhttps://string-db.org/network/398580.Dshi_1156Transcriptional regulator; Helix-Turn-Helix motif, AsnC/Lrp subfamily; AsnC family.
selO protein networkhttps://string-db.org/network/398580.Dshi_1157Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).
rih protein networkhttps://string-db.org/network/398580.Dshi_1158Inosine/uridine-preferring nucleoside hydrolase; Preference for inosine/uridine.
Dshi_1159 protein networkhttps://string-db.org/network/398580.Dshi_1159Hypothetical protein.
Dshi_1160 protein networkhttps://string-db.org/network/398580.Dshi_1160MazG family protein; Contains 2 MazG domains.
Dshi_1161 protein networkhttps://string-db.org/network/398580.Dshi_1161Amidohydrolase; Degradation of proteins, peptides, and glycopeptides.
Dshi_1162 protein networkhttps://string-db.org/network/398580.Dshi_1162Acriflavin resistance protein; RND transporters are involved in multidrug resistance, heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; Belongs to th [...]
Dshi_1163 protein networkhttps://string-db.org/network/398580.Dshi_1163RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; RND family, MFP subunit; Belongs to the m [...]
Dshi_1164 protein networkhttps://string-db.org/network/398580.Dshi_1164Conserved hypothetical protein; Conserved in Rhodobacteraceae and Rhizobiales.
Dshi_1165 protein networkhttps://string-db.org/network/398580.Dshi_1165Pyrrolo-quinoline quinone; Contains PQQ repeat domain involved in PQQ binding.
engA protein networkhttps://string-db.org/network/398580.Dshi_1166Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) [...]
Dshi_1167 protein networkhttps://string-db.org/network/398580.Dshi_1167Peptidase M48 Ste24p; Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases.
Dshi_1168 protein networkhttps://string-db.org/network/398580.Dshi_1168Aminotransferase class I and II; PLP-dependent enzyme.
amiC protein networkhttps://string-db.org/network/398580.Dshi_1169N-acetylmuramoyl-L-alanine amidase; Cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls, probably involved in cell-wall hydrolysis, septation or recycling.
Dshi_1170 protein networkhttps://string-db.org/network/398580.Dshi_1170Methyltransferase type 11; SAM dependent enzyme.
Dshi_1171 protein networkhttps://string-db.org/network/398580.Dshi_1171Penicillin-binding proteins are bifunctional proteins consisting of transglycosylase and transpeptidase in the N- and C-terminus respectively; 1A family.
prfB protein networkhttps://string-db.org/network/398580.Dshi_1172Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
Dshi_1173 protein networkhttps://string-db.org/network/398580.Dshi_1173NMT1/THI5 like domain protein; Proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine.
Dshi_1174 protein networkhttps://string-db.org/network/398580.Dshi_1174Conserved hypothetical protein; Putative inner membrane protein.
Dshi_1175 protein networkhttps://string-db.org/network/398580.Dshi_1175Protein of unknown function DUF583.
Dshi_1176 protein networkhttps://string-db.org/network/398580.Dshi_1176Peptidase M23B; Catalytic activity has not been demonstrated.
Dshi_1177 protein networkhttps://string-db.org/network/398580.Dshi_1177Protein of unknown function DUF455.
Dshi_1178 protein networkhttps://string-db.org/network/398580.Dshi_1178Related to alkyl hydroperoxide reductase/ Thiol specific antioxidant.
Dshi_1179 protein networkhttps://string-db.org/network/398580.Dshi_1179Conserved hypothetical protein; Putative outer membrane protein.
queA protein networkhttps://string-db.org/network/398580.Dshi_1180Queuosine biosynthesis protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
Dshi_1181 protein networkhttps://string-db.org/network/398580.Dshi_1181Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases.
hemA2 protein networkhttps://string-db.org/network/398580.Dshi_11825-aminolevulinic acid synthase; Maybe involved in steroid biosynthesis or vitamin biosynthesis.
Dshi_1183 protein networkhttps://string-db.org/network/398580.Dshi_1183Conserved hypothetical protein; Conserved in Rhodobacteraceae.
ispG protein networkhttps://string-db.org/network/398580.Dshi_11841-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG [...]
ksgA protein networkhttps://string-db.org/network/398580.Dshi_1185Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a c [...]
pdxA1 protein networkhttps://string-db.org/network/398580.Dshi_11864-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decar [...]
Dshi_1187 protein networkhttps://string-db.org/network/398580.Dshi_1187Contains SurA domain and Peptidyl-prolyl cis-trans isomerase domain, periplasmatic.
ostA protein networkhttps://string-db.org/network/398580.Dshi_1188Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
Dshi_1189 protein networkhttps://string-db.org/network/398580.Dshi_1189Permease YjgP/YjgQ family of unknown function.
Dshi_1190 protein networkhttps://string-db.org/network/398580.Dshi_1190Permease YjgP/YjgQ family of unknown function.
pepA1 protein networkhttps://string-db.org/network/398580.Dshi_1191Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
holC protein networkhttps://string-db.org/network/398580.Dshi_1192DNA polymerase III chi subunit HolC; Neccesary for a functional clamp-loading complex to form.
Dshi_1193 protein networkhttps://string-db.org/network/398580.Dshi_1193Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenase.
Dshi_1194 protein networkhttps://string-db.org/network/398580.Dshi_1194TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
Dshi_1195 protein networkhttps://string-db.org/network/398580.Dshi_1195TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
dctD protein networkhttps://string-db.org/network/398580.Dshi_1196Two component, sigma54 specific, transcriptional regulator; Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. When activated by dctB acts in [...]
dctB protein networkhttps://string-db.org/network/398580.Dshi_1197Integral membrane sensor signal transduction histidine kinase; Member of the two-component regulatory system dctB/dctD involved in the transport of C4-dicarboxylates. DctB functions as a membrane [...]
Dshi_1198 protein networkhttps://string-db.org/network/398580.Dshi_1198Beta-lactamase.
suhB1 protein networkhttps://string-db.org/network/398580.Dshi_1199Inositol-phosphate phosphatase; Mg-dependent, Reaction: Myo-inositol phosphate + H2O = myo-inositol + phosphate; Belongs to the inositol monophosphatase superfamily.
Dshi_1200 protein networkhttps://string-db.org/network/398580.Dshi_1200Rhomboid family protein; Putative inner membrane serine protease.
Dshi_1201 protein networkhttps://string-db.org/network/398580.Dshi_1201Tetratricopeptide TPR_2 repeat protein; 2 TPR, TPR mediates protein-protein interactions and the assembly of multiprotein complexes.
Dshi_1202 protein networkhttps://string-db.org/network/398580.Dshi_1202Contains DnaJ-Domain, wich mediats interaction with DnaK in heat shock proteins.
Dshi_1203 protein networkhttps://string-db.org/network/398580.Dshi_1203BolA family protein; In E. coli overexpression of this protein causes round morphology; Belongs to the BolA/IbaG family.
Dshi_1204 protein networkhttps://string-db.org/network/398580.Dshi_1204Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1205 protein networkhttps://string-db.org/network/398580.Dshi_1205Hypothetical protein.
Dshi_1206 protein networkhttps://string-db.org/network/398580.Dshi_1206Hypothetical protein.
gatB protein networkhttps://string-db.org/network/398580.Dshi_1207glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) i [...]
Dshi_1208 protein networkhttps://string-db.org/network/398580.Dshi_1208Conserved hypothetical protein.
coxC protein networkhttps://string-db.org/network/398580.Dshi_1209Integral membrane sensor and DNA-binding protein.
coxM protein networkhttps://string-db.org/network/398580.Dshi_1210Molybdopterin dehydrogenase FAD-binding; Aerobic-type carbon monoxide dehydrogenase, middle subunit, part of heterotrimer coxLMS.
coxS protein networkhttps://string-db.org/network/398580.Dshi_1211(2Fe-2S)-binding domain protein; Aerobic-type carbon monoxide dehydrogenase, small subunit, part of heterotrimer coxLMS, (2Fe-2S)-binding.
coxL2 protein networkhttps://string-db.org/network/398580.Dshi_1212Aerobic-type carbon monoxide dehydrogenase, large subunit, part of heterotrimer coxLMS.
coxD protein networkhttps://string-db.org/network/398580.Dshi_1213ATPase associated with various cellular activities AAA_5; ATPase activity.
coxE protein networkhttps://string-db.org/network/398580.Dshi_1214Protein containing von Willebrand factor type A (vWA) domain.
coxF protein networkhttps://string-db.org/network/398580.Dshi_1215Protein of unknown function DUF182.
panE protein networkhttps://string-db.org/network/398580.Dshi_12162-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
Dshi_1217 protein networkhttps://string-db.org/network/398580.Dshi_1217AMP-dependent synthetase and ligase; Putative acyl-coA synthetase.
Dshi_1218 protein networkhttps://string-db.org/network/398580.Dshi_1218Protein of unknown function DUF112 transmembrane.
Dshi_1219 protein networkhttps://string-db.org/network/398580.Dshi_1219Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1220 protein networkhttps://string-db.org/network/398580.Dshi_1220Conserved hypothetical protein.
Dshi_1221 protein networkhttps://string-db.org/network/398580.Dshi_1221Transcriptional regulator; Helix-Turn-Helix motif, XRE family, Domain of unknown funktion DUF955; XRE family.
Dshi_1222 protein networkhttps://string-db.org/network/398580.Dshi_1222Short-chain dehydrogenase/reductase SDR; Most enzymes of this family are NAD/NADP-dependent oxidoreductases.
pepN protein networkhttps://string-db.org/network/398580.Dshi_1223Involved in the degradation of intracellular peptides generated by protein breakdown during normal growth or in response to nutrient starvation, Release of an N-terminal amino acid, Xaa-|-Yaa- fr [...]
Dshi_1224 protein networkhttps://string-db.org/network/398580.Dshi_1224Hypothetical protein.
Dshi_1225 protein networkhttps://string-db.org/network/398580.Dshi_1225Deoxyribodipyrimidine photo-lyase; Photolyase/Cryptochrome family protein, catalytic activity not proved.
Dshi_1226 protein networkhttps://string-db.org/network/398580.Dshi_1226Hypothetical protein.
glcB protein networkhttps://string-db.org/network/398580.Dshi_1227Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to [...]
Dshi_1228 protein networkhttps://string-db.org/network/398580.Dshi_1228Protein of unknown function DUF336.
Dshi_1229 protein networkhttps://string-db.org/network/398580.Dshi_1229Peptidase C26; Gamma-glutamyl hydrolase activity.
Dshi_1230 protein networkhttps://string-db.org/network/398580.Dshi_1230Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
Dshi_1231 protein networkhttps://string-db.org/network/398580.Dshi_1231Beta-lactamase domain protein; Domain weakly conserved.
Dshi_1232 protein networkhttps://string-db.org/network/398580.Dshi_1232Isoprenylcysteine carboxyl methyltransferase family protein; Predicted domain weakly conserved.
pntA protein networkhttps://string-db.org/network/398580.Dshi_1233NAD(P) transhydrogenase, alpha subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to th [...]
pntB protein networkhttps://string-db.org/network/398580.Dshi_1234NAD(P)(+) transhydrogenase; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta s [...]
xylB1 protein networkhttps://string-db.org/network/398580.Dshi_1235Xylulokinase; Reaction: ATP + D-xylulose = ADP + D-xylulose 5-phosphate.
dmsC protein networkhttps://string-db.org/network/398580.Dshi_1236DMSO reductase anchor subunit; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit [...]
dmsB protein networkhttps://string-db.org/network/398580.Dshi_12374Fe-4S ferredoxin iron-sulfur binding domain protein; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic p [...]
dmsA2 protein networkhttps://string-db.org/network/398580.Dshi_1238Molybdopterin oxidoreductase Fe4S4 region; Dimethyl sulphoxide reductase is a heterotrimeric enzyme, composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic an [...]
lacZ protein networkhttps://string-db.org/network/398580.Dshi_1239Beta-galactosidase; Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides, homotrimer.
Dshi_1240 protein networkhttps://string-db.org/network/398580.Dshi_1240Domain found in various proteins.
dgoA protein networkhttps://string-db.org/network/398580.Dshi_1241KDPG and KHG aldolase; Keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase.
dgoK protein networkhttps://string-db.org/network/398580.Dshi_12422-dehydro-3-deoxygalactonokinase; Catalyses the second step in D-galactonate degradation.
Dshi_1243 protein networkhttps://string-db.org/network/398580.Dshi_1243Short-chain dehydrogenase/reductase SDR; Large family of oxidoreductases, NAD, NADP-dependent.
ilvD2 protein networkhttps://string-db.org/network/398580.Dshi_1244Dihydroxy-acid dehydratase; Catalyzes the fourth step in the biosynthesis of isoleucine and valine; Belongs to the IlvD/Edd family.
melA protein networkhttps://string-db.org/network/398580.Dshi_1245Glycoside hydrolase family 4 protein, Hydrolysis of terminal, non-reducing alpha-D-galactose residues, NAD and Mn-dependent.
Dshi_1246 protein networkhttps://string-db.org/network/398580.Dshi_1246Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport system, permease component, no ATPase in cluster.
Dshi_1247 protein networkhttps://string-db.org/network/398580.Dshi_1247Binding-protein-dependent transport systems inner membrane component; ABC-type sugar transport system, permease component, no ATPase in cluster.
Dshi_1248 protein networkhttps://string-db.org/network/398580.Dshi_1248Extracellular solute-binding protein family 1; ABC-type sugar transport system, ligand binding component, no ATPase in cluster.
Dshi_1249 protein networkhttps://string-db.org/network/398580.Dshi_1249Transcriptional regulator; Helix-Turn-Helix motif, iclR subfamily; IclR family.
Dshi_1250 protein networkhttps://string-db.org/network/398580.Dshi_1250ABC transporter (importer) gene cluster (disrupted): ATP binding cassette (ABC) domain; part of a heterotetramer; Belongs to the ABC transporter superfamily.
Dshi_1252 protein networkhttps://string-db.org/network/398580.Dshi_1252Protein of unknown function DUF1045.
Dshi_1253 protein networkhttps://string-db.org/network/398580.Dshi_1253Transcriptional regulator; Putative protein-phosphotyrosine-phosphatase activity, ArsR family regulators are sensitive to metal ions; ArsR family; Belongs to the low molecular weight phosphotyros [...]
Dshi_1254 protein networkhttps://string-db.org/network/398580.Dshi_1254Glyceraldehyde-3-phosphate dehydrogenase; Tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis; type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
Dshi_1255 protein networkhttps://string-db.org/network/398580.Dshi_1255Major facilitator superfamily MFS_1; The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients.
Dshi_1256 protein networkhttps://string-db.org/network/398580.Dshi_1256The exo genes are involved in exopolysaccharide biosynthesis, exoD of Rhizobium meliloti encodes a function needed for alfalfa nodule invasion.
Dshi_1257 protein networkhttps://string-db.org/network/398580.Dshi_1257Conserved hypothetical protein.
Dshi_1258 protein networkhttps://string-db.org/network/398580.Dshi_1258Short-chain dehydrogenase/reductase SDR; Most enzymes of this family are NAD/NADP-dependent oxidoreductases.
Dshi_1259 protein networkhttps://string-db.org/network/398580.Dshi_1259Heavy metal translocating P-type ATPase.
Dshi_1260 protein networkhttps://string-db.org/network/398580.Dshi_1260Transcriptional regulator; Contains winged helix DNA-binding motif; MerR family.
gltS protein networkhttps://string-db.org/network/398580.Dshi_1261Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
Dshi_1262 protein networkhttps://string-db.org/network/398580.Dshi_1262Acriflavin resistance protein; RND transporters are involved in multidrug resistance, heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; Belongs to th [...]
Dshi_1263 protein networkhttps://string-db.org/network/398580.Dshi_1263RND transporters are involved in multidrug resistance and heavy metal resistance. The resistance is performed by H+ driven export of the toxic compounds; RND family, MFP subunit; Belongs to the m [...]
Dshi_1264 protein networkhttps://string-db.org/network/398580.Dshi_1264Ion transport 2 domain protein; Two membrane helix type ion channel.
idhA protein networkhttps://string-db.org/network/398580.Dshi_1265Inositol 2-dehydrogenase; Carbohydrate degradation.
fbaA protein networkhttps://string-db.org/network/398580.Dshi_1266Ketose-bisphosphate aldolase; Zinc-dependent, homodimeric enzyme.
iolB protein networkhttps://string-db.org/network/398580.Dshi_1267Conserved hypothetical protein.
iolC protein networkhttps://string-db.org/network/398580.Dshi_1268PfkB domain protein; Putative enzyme involved in myo-inositol catabolism.
iolD protein networkhttps://string-db.org/network/398580.Dshi_1269Thiamine pyrophosphate protein central region; Putative enzyme involved in myo-inositol catabolism, Thiamine-dependent; Belongs to the TPP enzyme family.
Dshi_1270 protein networkhttps://string-db.org/network/398580.Dshi_1270Oxidoreductase domain protein; NAD-dependent oxidoreductase.
Dshi_1271 protein networkhttps://string-db.org/network/398580.Dshi_1271Xylose isomerase domain protein TIM barrel; Putative enzyme involved in myo-inositol catabolism.
Dshi_1272 protein networkhttps://string-db.org/network/398580.Dshi_1272Oxidoreductase domain protein; NAD-dependent oxidoreductase.
Dshi_1273 protein networkhttps://string-db.org/network/398580.Dshi_1273Transcriptional regulator; Helix-Turn-Helix motif, Sugar -binding domain; LacI family.
Dshi_1274 protein networkhttps://string-db.org/network/398580.Dshi_1274Periplasmic binding protein/LacI transcriptional regulator; ATPase gene cluster: periplasmatic binding component, permease component, ATPase component.
Dshi_1275 protein networkhttps://string-db.org/network/398580.Dshi_1275ATPase gene cluster: periplasmatic binding component, permease component, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
Dshi_1276 protein networkhttps://string-db.org/network/398580.Dshi_1276ABC transporter related; ATPase gene cluster: periplasmatic binding component, permease component, ATPase component.
Dshi_1277 protein networkhttps://string-db.org/network/398580.Dshi_1277Hypothetical protein.
Dshi_1278 protein networkhttps://string-db.org/network/398580.Dshi_1278phytanoyl-CoA dioxygenase.
iolB2 protein networkhttps://string-db.org/network/398580.Dshi_1279Myo-inositol catabolism IolB domain protein.
Dshi_1280 protein networkhttps://string-db.org/network/398580.Dshi_1280Aminotransferase class V; Domain is found in amino transferases, and other enzymes including cysteine desulphurase, PLP dependent enzyme.
fdhB protein networkhttps://string-db.org/network/398580.Dshi_1281High similarity to Respiratory-chain NADH dehydrogenase domain 24 kDa and 51 kDa subunits(PMID:2187144).
fdhA protein networkhttps://string-db.org/network/398580.Dshi_1282Formate dehydrogenase, alpha subunit; Complex with fdhB, Molybdopterin oxidoreductase, contains Fe-S clusters; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
fhs protein networkhttps://string-db.org/network/398580.Dshi_1283Formate--tetrahydrofolate ligase; Participates in the transfer of one-carbon units; Belongs to the formate--tetrahydrofolate ligase family.
Dshi_1284 protein networkhttps://string-db.org/network/398580.Dshi_1284Chorismate mutase related enzyme.
folD protein networkhttps://string-db.org/network/398580.Dshi_1285NADP(+) dependent methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetr [...]
Dshi_1286 protein networkhttps://string-db.org/network/398580.Dshi_1286Conserved hypothetical protein.
Dshi_1287 protein networkhttps://string-db.org/network/398580.Dshi_1287Protein of unknown function DUF395 YeeE/YedE.
Dshi_1288 protein networkhttps://string-db.org/network/398580.Dshi_1288Amidohydrolase.
Dshi_1289 protein networkhttps://string-db.org/network/398580.Dshi_1289Glutamine amidotransferase class-I; Catalyzes the synthesis of GMP.
moaA protein networkhttps://string-db.org/network/398580.Dshi_1290Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
Dshi_1291 protein networkhttps://string-db.org/network/398580.Dshi_1291DNA alkylation repair enzyme.
Dshi_1292 protein networkhttps://string-db.org/network/398580.Dshi_1292Pyridoxamine 5'-phosphate oxidase-related FMN-binding.
glmS protein networkhttps://string-db.org/network/398580.Dshi_1293Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
glmU protein networkhttps://string-db.org/network/398580.Dshi_12944-diphosphocytidyl-2C-methyl-D-erythritol synthase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domai [...]
Dshi_1295 protein networkhttps://string-db.org/network/398580.Dshi_1295HAD-superfamily hydrolase; Specifically catalyzes the dephosphorylation of 2-phosphoglycolate; subfamily IA, variant 3.
Dshi_1296 protein networkhttps://string-db.org/network/398580.Dshi_1296DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
ivd protein networkhttps://string-db.org/network/398580.Dshi_1297acyl-CoA dehydrogenase domain protein; FAD-dependent, Reaction: 3-methylbutanoyl-CoA + acceptor = 3-methylbut-2-enoyl-CoA + reduced acceptor.
Dshi_1298 protein networkhttps://string-db.org/network/398580.Dshi_1298Conserved hypothetical protein.
Dshi_1299 protein networkhttps://string-db.org/network/398580.Dshi_1299OmpW family protein.
mccB protein networkhttps://string-db.org/network/398580.Dshi_1300propionyl-CoA carboxylase; Involved in leucine catabolism.
mccA protein networkhttps://string-db.org/network/398580.Dshi_1301Carbamoyl-phosphate synthase L chain ATP-binding; Involved in leucine catabolism.
Dshi_1302 protein networkhttps://string-db.org/network/398580.Dshi_1302Glutathione S-transferase domain protein.
mvaB protein networkhttps://string-db.org/network/398580.Dshi_1303hydroxymethylglutaryl-CoA lyase; Involved ketogenesis and leucine catabolism.
mvaA protein networkhttps://string-db.org/network/398580.Dshi_1304enoyl-CoA hydratase/isomerase; Involved ketogenesis and leucine catabolism.
Dshi_1305 protein networkhttps://string-db.org/network/398580.Dshi_130517 kDa surface antigen.
nuoA protein networkhttps://string-db.org/network/398580.Dshi_1307NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acce [...]
nuoB protein networkhttps://string-db.org/network/398580.Dshi_1308NADH-quinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation ( [...]
nuoC protein networkhttps://string-db.org/network/398580.Dshi_1309NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for th [...]
Dshi_1310 protein networkhttps://string-db.org/network/398580.Dshi_1310Conserved hypothetical protein.
nuoD protein networkhttps://string-db.org/network/398580.Dshi_1311NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme i [...]
Dshi_1312 protein networkhttps://string-db.org/network/398580.Dshi_1312Hypothetical protein.
nuoE protein networkhttps://string-db.org/network/398580.Dshi_1313NADH-quinone oxidoreductase, E subunit; Shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain.
Dshi_1314 protein networkhttps://string-db.org/network/398580.Dshi_1314Conserved hypothetical protein.
Dshi_1315 protein networkhttps://string-db.org/network/398580.Dshi_1315Conserved hypothetical protein; Conserved in Rhodobacteraceae.
nuoF protein networkhttps://string-db.org/network/398580.Dshi_1316NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit f [...]
Dshi_1317 protein networkhttps://string-db.org/network/398580.Dshi_1317Hypothetical protein.
Dshi_1318 protein networkhttps://string-db.org/network/398580.Dshi_1318Hypothetical protein.
Dshi_1319 protein networkhttps://string-db.org/network/398580.Dshi_1319Conserved hypothetical protein.
nuoG protein networkhttps://string-db.org/network/398580.Dshi_1320NADH-quinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation ( [...]
nuoH protein networkhttps://string-db.org/network/398580.Dshi_1321Quinone dependent NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enz [...]
nuoI protein networkhttps://string-db.org/network/398580.Dshi_1322NADH-quinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in th [...]
Dshi_1323 protein networkhttps://string-db.org/network/398580.Dshi_1323Carboxymuconolactone decarboxylase.
nuoJ protein networkhttps://string-db.org/network/398580.Dshi_1324NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction [...]
Dshi_1325 protein networkhttps://string-db.org/network/398580.Dshi_1325Conserved hypothetical protein.
nuoK protein networkhttps://string-db.org/network/398580.Dshi_1326NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the [...]
nuoL protein networkhttps://string-db.org/network/398580.Dshi_1327Proton-translocating NADH-quinone oxidoreductase; Shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; chain L.
nuoM protein networkhttps://string-db.org/network/398580.Dshi_1328Proton-translocating NADH-quinone oxidoreductase; Shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; chain M.
nuoN protein networkhttps://string-db.org/network/398580.Dshi_1329Proton-translocating NADH-quinone oxidoreductase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor [...]
Dshi_1330 protein networkhttps://string-db.org/network/398580.Dshi_1330biotin--acetyl-CoA-carboxylase ligase.
coaX protein networkhttps://string-db.org/network/398580.Dshi_1331Putative transcriptional acitvator; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis; Belongs to the type III pantothenate kinase family.
Dshi_1332 protein networkhttps://string-db.org/network/398580.Dshi_1332Beta-lactamase domain protein.
rhlE protein networkhttps://string-db.org/network/398580.Dshi_1333DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
Dshi_1334 protein networkhttps://string-db.org/network/398580.Dshi_1334Tetratricopeptide TPR_2 repeat protein; TPR containing proteins are involved in assambly of multiprotein complexes.
Dshi_1335 protein networkhttps://string-db.org/network/398580.Dshi_1335Conserved hypothetical protein.
prfC protein networkhttps://string-db.org/network/398580.Dshi_1336Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for U [...]
Dshi_1337 protein networkhttps://string-db.org/network/398580.Dshi_1337Conserved hypothetical protein.
uspA1 protein networkhttps://string-db.org/network/398580.Dshi_1338Contains 2 UspA domains, expression is enhanced when the cell is exposed to stress agents, enhances the rate of cell survival during prolonged exposure to such conditions.
Dshi_1339 protein networkhttps://string-db.org/network/398580.Dshi_1339Short-chain dehydrogenase/reductase SDR; Most enzymes of this family are NAD/NADP-dependent oxidoreductases.
Dshi_1340 protein networkhttps://string-db.org/network/398580.Dshi_1340Na+/solute symporter; The energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient.
Dshi_1341 protein networkhttps://string-db.org/network/398580.Dshi_1341ABC transporter related; Unknown specificity, high similarity to iron ABC transporters.
Dshi_1342 protein networkhttps://string-db.org/network/398580.Dshi_1342Helix-turn-helix type 11 domain protein.
tatA protein networkhttps://string-db.org/network/398580.Dshi_1343Sec-independent translocation protein mttA/Hcf106; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in t [...]
tatB protein networkhttps://string-db.org/network/398580.Dshi_1344Twin-arginine translocation protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal pe [...]
tatC protein networkhttps://string-db.org/network/398580.Dshi_1345Sec-independent protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal pe [...]
Dshi_1346 protein networkhttps://string-db.org/network/398580.Dshi_1346Protein of unknown function DUF815.
Dshi_1347 protein networkhttps://string-db.org/network/398580.Dshi_1347Conserved hypothetical protein.
Dshi_1348 protein networkhttps://string-db.org/network/398580.Dshi_1348Integral membrane protein family that includes the antibiotic resistance protein MarC. These proteins may be transporters.
Dshi_1349 protein networkhttps://string-db.org/network/398580.Dshi_1349ABC transporter related; Duplicated ATPase domain.
ndk protein networkhttps://string-db.org/network/398580.Dshi_1350Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, [...]
Dshi_1351 protein networkhttps://string-db.org/network/398580.Dshi_1351Hypothetical protein.
Dshi_1352 protein networkhttps://string-db.org/network/398580.Dshi_1352TfoX domain protein; No evidence for predicted domain.
Dshi_1353 protein networkhttps://string-db.org/network/398580.Dshi_1353Extracellular solute-binding protein family 1; ABC transporter (importer) gene cluster: receptor.
Dshi_1354 protein networkhttps://string-db.org/network/398580.Dshi_1354Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1355 protein networkhttps://string-db.org/network/398580.Dshi_1355Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1356 protein networkhttps://string-db.org/network/398580.Dshi_1356Conserved hypothetical protein.
Dshi_1357 protein networkhttps://string-db.org/network/398580.Dshi_1357ABC transporter (importer) gene cluster: ATP binding cassette (ABC) domain; part of a heterotetramer; Belongs to the ABC transporter superfamily.
Dshi_1358 protein networkhttps://string-db.org/network/398580.Dshi_1358Short-chain dehydrogenase/reductase SDR; Most enzymes of this family are NAD/NADP-dependent oxidoreductases.
Dshi_1359 protein networkhttps://string-db.org/network/398580.Dshi_1359Protein of unknown function DUF35.
Dshi_1360 protein networkhttps://string-db.org/network/398580.Dshi_1360Protein of unknown function DUF1486; SnoaL-like polyketide cyclase family protein.
dld1 protein networkhttps://string-db.org/network/398580.Dshi_1361D-lactate dehydrogenase; Catalyzes the stereospecific oxidation of D-lactate to pyruvate; cytochrome.
Dshi_1362 protein networkhttps://string-db.org/network/398580.Dshi_1362FAD-dependent pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases, high similarity to NADPH-depend [...]
pyrD1 protein networkhttps://string-db.org/network/398580.Dshi_1363Dihydroorotate dehydrogenase family protein; Catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate.
Dshi_1364 protein networkhttps://string-db.org/network/398580.Dshi_1364Hypothetical protein.
Dshi_1365 protein networkhttps://string-db.org/network/398580.Dshi_1365Transcriptional regulator; Helix-Turn-Helix motif; TetR family.
Dshi_1366 protein networkhttps://string-db.org/network/398580.Dshi_1366Aminotransferase class-III; Similar to omega-amino acid--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
amaB protein networkhttps://string-db.org/network/398580.Dshi_1367Amidase; Reaction: N-carbamoyl-L-2-amino acid (a 2-ureido carboxylate) + H2O = L-2-amino acid + NH3 + CO2; hydantoinase/carbamoylase family.
Dshi_1368 protein networkhttps://string-db.org/network/398580.Dshi_1368Hypothetical protein.
Dshi_1369 protein networkhttps://string-db.org/network/398580.Dshi_1369This family includes class II aldolases and adducins which have not been ascribed any enzymatic function.
dht protein networkhttps://string-db.org/network/398580.Dshi_1370Dihydropyrimidinase; Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins.
Dshi_1371 protein networkhttps://string-db.org/network/398580.Dshi_1371ABC transporter (importer) gene cluster (disrupted): ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_1372 protein networkhttps://string-db.org/network/398580.Dshi_1372Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1373 protein networkhttps://string-db.org/network/398580.Dshi_1373Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1374 protein networkhttps://string-db.org/network/398580.Dshi_1374NMT1/THI5 like domain protein; ABC transporter (importer) gene cluster: receptor.
Dshi_1375 protein networkhttps://string-db.org/network/398580.Dshi_1375Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
Dshi_1376 protein networkhttps://string-db.org/network/398580.Dshi_1376Creatininase; Catalyses the hydrolysis of creatinine to creatine.
Dshi_1377 protein networkhttps://string-db.org/network/398580.Dshi_13772OG-Fe(II) oxygenase; This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
Dshi_1378 protein networkhttps://string-db.org/network/398580.Dshi_1378Catalyseses the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species.
Dshi_1379 protein networkhttps://string-db.org/network/398580.Dshi_1379Catalyseses the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species.
Dshi_1380 protein networkhttps://string-db.org/network/398580.Dshi_1380FAD linked oxidase domain protein; This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase.
Dshi_1381 protein networkhttps://string-db.org/network/398580.Dshi_1381Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofu [...]
Dshi_1382 protein networkhttps://string-db.org/network/398580.Dshi_1382Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1383 protein networkhttps://string-db.org/network/398580.Dshi_1383ABC transporter (importer) gene cluster: ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_1384 protein networkhttps://string-db.org/network/398580.Dshi_1384Permease protein of ABC transporter; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1385 protein networkhttps://string-db.org/network/398580.Dshi_1385Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA.
Dshi_1386 protein networkhttps://string-db.org/network/398580.Dshi_1386Hypothetical protein.
clpX protein networkhttps://string-db.org/network/398580.Dshi_1387ATP-dependent Clp protease; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
clpP protein networkhttps://string-db.org/network/398580.Dshi_1388Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. B [...]
Dshi_1389 protein networkhttps://string-db.org/network/398580.Dshi_1389Putative deoxyribodipyrimidine photo-lyase.
Dshi_1390 protein networkhttps://string-db.org/network/398580.Dshi_1390NADH:ubiquinone oxidoreductase 17.2 kD subunit; Not in the context of respiratory chain operon.
Dshi_1391 protein networkhttps://string-db.org/network/398580.Dshi_1391Mammalian cell entry related domain.
Dshi_1392 protein networkhttps://string-db.org/network/398580.Dshi_1392Conserved hypothetical protein.
Dshi_1393 protein networkhttps://string-db.org/network/398580.Dshi_1393Conserved hypothetical protein.
aat protein networkhttps://string-db.org/network/398580.Dshi_1394Leucyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing [...]
accC protein networkhttps://string-db.org/network/398580.Dshi_1395acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transca [...]
accB protein networkhttps://string-db.org/network/398580.Dshi_1396acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transca [...]
Dshi_1397 protein networkhttps://string-db.org/network/398580.Dshi_1397Contains several Hemolysin-type calcium-binding repeats found in proteins that are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence.
Dshi_1398 protein networkhttps://string-db.org/network/398580.Dshi_1398Domain of unknown function DUF1791; Domain structure is similar to that of dehydrogenases, amidohydrolases, and oxidoreductases, however sequence and structural analyses have shown that it does n [...]
acsA protein networkhttps://string-db.org/network/398580.Dshi_1399acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. [...]
Dshi_1400 protein networkhttps://string-db.org/network/398580.Dshi_1400ABC transporter (importer) gene cluster: 2nd ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_1401 protein networkhttps://string-db.org/network/398580.Dshi_1401ABC transporter (importer) gene cluster: 1st ATP binding cassette (ABC) domain; part of a heterotetramer.
Dshi_1402 protein networkhttps://string-db.org/network/398580.Dshi_1402Inner-membrane translocator; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system perme [...]
Dshi_1403 protein networkhttps://string-db.org/network/398580.Dshi_1403Inner-membrane translocator; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer; Belongs to the binding-protein-dependent transport system perme [...]
Dshi_1404 protein networkhttps://string-db.org/network/398580.Dshi_1404Branched-chain amino acid ABC transporter; ABC transporter (importer) gene cluster: receptor; periplasmic binding protein, putative.
Dshi_1405 protein networkhttps://string-db.org/network/398580.Dshi_1405Transcriptional regulator; Helix-Turn-Helix motif; XRE family.
Dshi_1406 protein networkhttps://string-db.org/network/398580.Dshi_1406Response regulator receiver protein; DNA-binding motif, normally found at the C-terminus, is missing.
Dshi_1407 protein networkhttps://string-db.org/network/398580.Dshi_1407Conserved hypothetical protein.
Dshi_1408 protein networkhttps://string-db.org/network/398580.Dshi_1408Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms.
Dshi_1409 protein networkhttps://string-db.org/network/398580.Dshi_1409Hypothetical protein.
Dshi_1410 protein networkhttps://string-db.org/network/398580.Dshi_1410Protein of unknown function DUF442.
Dshi_1411 protein networkhttps://string-db.org/network/398580.Dshi_1411Transcriptional regulator; TraR/DksA family.
Dshi_1412 protein networkhttps://string-db.org/network/398580.Dshi_1412Hypothetical protein.
Dshi_1413 protein networkhttps://string-db.org/network/398580.Dshi_1413Extracellular solute-binding protein family 1; ABC transporter (importer) gene cluster: receptor.
Dshi_1414 protein networkhttps://string-db.org/network/398580.Dshi_1414Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1415 protein networkhttps://string-db.org/network/398580.Dshi_1415Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1416 protein networkhttps://string-db.org/network/398580.Dshi_1416ABC transporter (importer) gene cluster: ATP binding cassette (ABC) domain; part of a heterotetramer; Belongs to the ABC transporter superfamily.
Dshi_1417 protein networkhttps://string-db.org/network/398580.Dshi_1417Protein of unknown function DUF1486.
Dshi_1418 protein networkhttps://string-db.org/network/398580.Dshi_1418Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1419 protein networkhttps://string-db.org/network/398580.Dshi_1419Conserved hypothetical protein.
Dshi_1420 protein networkhttps://string-db.org/network/398580.Dshi_1420Conserved hypothetical protein; Conserved in Rhodobacteraceae.
Dshi_1421 protein networkhttps://string-db.org/network/398580.Dshi_1421ABC transporter (importer) gene cluster: receptor; substrate-binding protein.
rbsA3 protein networkhttps://string-db.org/network/398580.Dshi_1422ABC transporter (importer) gene cluster: fused ATP binding cassette (ABC) domains; part of a heterotrimer.
rbsB2 protein networkhttps://string-db.org/network/398580.Dshi_1423Inner-membrane translocator; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotrimer; Belongs to the binding-protein-dependent transport system permeas [...]
rbsC1 protein networkhttps://string-db.org/network/398580.Dshi_1424Inner-membrane translocator; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotrimer; Belongs to the binding-protein-dependent transport system permeas [...]
Dshi_1425 protein networkhttps://string-db.org/network/398580.Dshi_1425This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor (PFAM, INTERPRO; COG: NAD-dependent enzyme).
Dshi_1426 protein networkhttps://string-db.org/network/398580.Dshi_1426Hydro-lyase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
citF protein networkhttps://string-db.org/network/398580.Dshi_1427Represents a citrate:acetyl-ACP transferase, alpha subunit of the holoenzyme citrate lyase composed of alpha, beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6TCA- [...]
Dshi_1428 protein networkhttps://string-db.org/network/398580.Dshi_1428Glucose-methanol-choline oxidoreductase; Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.
Dshi_1429 protein networkhttps://string-db.org/network/398580.Dshi_1429Short-chain dehydrogenase/reductase SDR; Large family of oxidoreductases, NAD, NADP-dependent.
Dshi_1430 protein networkhttps://string-db.org/network/398580.Dshi_1430This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor.
Dshi_1431 protein networkhttps://string-db.org/network/398580.Dshi_1431Transcriptional regulator; Contains substrate binding domain, putative homotetramer; LysR family; Belongs to the LysR transcriptional regulatory family.
Dshi_1432 protein networkhttps://string-db.org/network/398580.Dshi_1432L-carnitine dehydratase/bile acid-inducible protein F; These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific m [...]
Dshi_1433 protein networkhttps://string-db.org/network/398580.Dshi_1433Hypothetical protein.
Dshi_1434 protein networkhttps://string-db.org/network/398580.Dshi_1434Remnant of Xaa-Pro dipeptidase.
Dshi_1435 protein networkhttps://string-db.org/network/398580.Dshi_1435Alpha/beta hydrolase fold protein; Domain is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function.
Dshi_1436 protein networkhttps://string-db.org/network/398580.Dshi_1436Binding-protein-dependent transport systems inner membrane component; ABC transporter gene cluster, permease component.
Dshi_1437 protein networkhttps://string-db.org/network/398580.Dshi_1437ABC transporter gene cluster, ATPase component; ATPase subunit.
Dshi_1438 protein networkhttps://string-db.org/network/398580.Dshi_1438Substrate-binding region of ABC-type glycine betaine transport system; ABC transporter gene cluster, periplasmatic substrate binding component.
Dshi_1439 protein networkhttps://string-db.org/network/398580.Dshi_1439Pyridoxal phosphate-dependent enzyme; PLP-dependent enzyme; D-cysteine desulfhydrase family.
Dshi_1440 protein networkhttps://string-db.org/network/398580.Dshi_1440Transcriptional regulator; Contains substrate binding domain, putative homotetramer; LysR family; Belongs to the LysR transcriptional regulatory family.
Dshi_1441 protein networkhttps://string-db.org/network/398580.Dshi_1441Hypothetical protein; C-Terminus conserved.
Dshi_1442 protein networkhttps://string-db.org/network/398580.Dshi_1442Peroxidase.
Dshi_1443 protein networkhttps://string-db.org/network/398580.Dshi_1443TRAP transporter solute receptor; TRAP gene cluster - dctPQM; TAXI family.
Dshi_1444 protein networkhttps://string-db.org/network/398580.Dshi_1444TRAP gene cluster - dctPQM; 4TM/12TM fusion protein.
uspG protein networkhttps://string-db.org/network/398580.Dshi_1445Contains 1 UspA domain, expression is enhanced when the cell is exposed to stress agents, enhances the rate of cell survival during prolonged exposure to such conditions.
Dshi_1446 protein networkhttps://string-db.org/network/398580.Dshi_1446Aminotransferase class-III; PLP-dependent enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
Dshi_1448 protein networkhttps://string-db.org/network/398580.Dshi_1448HTH-type transcriptional regulator ZntR.
Dshi_1449 protein networkhttps://string-db.org/network/398580.Dshi_1449TonB-dependent receptor; TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic [...]
Dshi_1450 protein networkhttps://string-db.org/network/398580.Dshi_1450NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family.
ssuB2 protein networkhttps://string-db.org/network/398580.Dshi_1451Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
ssuC2 protein networkhttps://string-db.org/network/398580.Dshi_1452Binding-protein-dependent transport systems inner membrane component; Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.
ssuA2 protein networkhttps://string-db.org/network/398580.Dshi_1453Putative sulfonate/nitrate transport system substrate-binding protein; Part of the ABC transporter complex ssuABC involved in aliphatic sulfonates import.
Dshi_1454 protein networkhttps://string-db.org/network/398580.Dshi_1454Conserved hypothetical protein.
Dshi_1455 protein networkhttps://string-db.org/network/398580.Dshi_1455Transposase.
Dshi_1456 protein networkhttps://string-db.org/network/398580.Dshi_1456Integrase catalytic region; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains.
Dshi_1457 protein networkhttps://string-db.org/network/398580.Dshi_1457Type III restriction protein res subunit; Protects the organism against invading foreign DNA, part of a heteromeric enzyme complex, mod (modification methyltransferase)subunit is missing.
Dshi_1459 protein networkhttps://string-db.org/network/398580.Dshi_1459Conserved hypothetical protein; Outer membrane protein.
rplU protein networkhttps://string-db.org/network/398580.Dshi_1460Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
rpmA protein networkhttps://string-db.org/network/398580.Dshi_1461Ribosomal protein L27; 50S ribosomal subunit; Belongs to the bacterial ribosomal protein bL27 family.
Dshi_1462 protein networkhttps://string-db.org/network/398580.Dshi_1462LysE family transport protein.
Dshi_1463 protein networkhttps://string-db.org/network/398580.Dshi_1463GCN5-related N-acetyltransferase.
Dshi_1464 protein networkhttps://string-db.org/network/398580.Dshi_1464GCN5-related N-acetyltransferase.
Dshi_1465 protein networkhttps://string-db.org/network/398580.Dshi_1465GCN5-related N-acetyltransferase.
obg protein networkhttps://string-db.org/network/398580.Dshi_1466GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Play [...]
proB protein networkhttps://string-db.org/network/398580.Dshi_1467Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
Dshi_1468 protein networkhttps://string-db.org/network/398580.Dshi_1468Hypothetical protein.
proA protein networkhttps://string-db.org/network/398580.Dshi_1469Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclizat [...]
Dshi_1470 protein networkhttps://string-db.org/network/398580.Dshi_1470Conserved hypothetical protein.
Dshi_1471 protein networkhttps://string-db.org/network/398580.Dshi_1471Conserved hypothetical protein.
Dshi_1472 protein networkhttps://string-db.org/network/398580.Dshi_1472Similar to ornithine acyl[acyl carrier protein] N-acyltransferase in S. pomeroyi.
Dshi_1473 protein networkhttps://string-db.org/network/398580.Dshi_1473Phospholipid/glycerol acyltransferase; Glycerophospholipid metabolism.
Dshi_1474 protein networkhttps://string-db.org/network/398580.Dshi_1474Similar to Glutamyl-Q tRNA(Asp) synthetase which catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp); Belongs to th [...]
gid protein networkhttps://string-db.org/network/398580.Dshi_1475Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
gyrA protein networkhttps://string-db.org/network/398580.Dshi_1476DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in [...]
Dshi_1477 protein networkhttps://string-db.org/network/398580.Dshi_1477Usg family protein; Not in the trp operon, Usg is normally found in trpF, trpB, and trpA context.
Dshi_1478 protein networkhttps://string-db.org/network/398580.Dshi_1478Disulphide bond formation protein DsbB; The DsbB protein oxidises the periplasmic protein DsbA which in turn oxidises cysteines in other periplasmic proteins in order to make disulfide bonds.
Dshi_1479 protein networkhttps://string-db.org/network/398580.Dshi_1479The exo genes are involved in exopolysaccharide biosynthesis, exoD of Rhizobium meliloti encodes a function needed for alfalfa nodule invasion.
Dshi_1480 protein networkhttps://string-db.org/network/398580.Dshi_1480TRAP dicarboxylate transporter- DctP subunit; TRAP gene cluster - dctPQM.
Dshi_1481 protein networkhttps://string-db.org/network/398580.Dshi_1481Conserved hypothetical protein; TRAP gene cluster - dctPQM.
Dshi_1482 protein networkhttps://string-db.org/network/398580.Dshi_1482TRAP dicarboxylate transporter; TRAP gene cluster - dctPQM; DctM subunit.
Dshi_1483 protein networkhttps://string-db.org/network/398580.Dshi_1483Conserved hypothetical protein.
Dshi_1484 protein networkhttps://string-db.org/network/398580.Dshi_1484Conserved hypothetical protein.
Dshi_1485 protein networkhttps://string-db.org/network/398580.Dshi_1485DOMAINS: FAD dependent oxidoreductase, Glycine cleavage T-protein, involved in amine and polyamine degradation; Belongs to the GcvT family.
Dshi_1486 protein networkhttps://string-db.org/network/398580.Dshi_1486BCCT transporter; Betaine / Carnitine / Choline Transporter, The BCCT proteins contain 12 transmembrane regions and are energized by proton symport.
Dshi_1487 protein networkhttps://string-db.org/network/398580.Dshi_1487ABC transporter (importer) gene cluster: 2 fused ATPase/ Oligopeptide/dipeptide transporter, C-terminal region domains; ATPase subunit; Belongs to the ABC transporter superfamily.
Dshi_1488 protein networkhttps://string-db.org/network/398580.Dshi_1488Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 2nd membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1489 protein networkhttps://string-db.org/network/398580.Dshi_1489Binding-protein-dependent transport systems inner membrane component; ABC transporter (importer) gene cluster: 1st membrane spanning domain (MSD); part of a heterotetramer.
Dshi_1490 protein networkhttps://string-db.org/network/398580.Dshi_1490Extracellular solute-binding protein family 5; ABC transporter (importer) gene cluster: receptor.
Dshi_1491 protein networkhttps://string-db.org/network/398580.Dshi_1491Transcriptional regulator; Only 1 DNA-binding domain, no substrate binding domain; AraC family.
miaA protein networkhttps://string-db.org/network/398580.Dshi_1492tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to th [...]
pyrH protein networkhttps://string-db.org/network/398580.Dshi_1493Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
frr protein networkhttps://string-db.org/network/398580.Dshi_1494Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosome [...]
uppS protein networkhttps://string-db.org/network/398580.Dshi_1495Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
cdsA1 protein networkhttps://string-db.org/network/398580.Dshi_1496Phosphatidate cytidylyltransferase; Catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CDP-diacylglycerol is an important branch point intermediate in both prokaryotic [...]
dxr protein networkhttps://string-db.org/network/398580.Dshi_14971-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Be [...]
ecfE protein networkhttps://string-db.org/network/398580.Dshi_1498Zinc-Metalloprotease; Degrades both heat shock sigma factors rpoE and rpoH.
yaeT protein networkhttps://string-db.org/network/398580.Dshi_1499Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
Dshi_1500 protein networkhttps://string-db.org/network/398580.Dshi_1500Outer membrane chaperone Skp; Skp (OmpH) has been characterised as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery [...]
fabZ protein networkhttps://string-db.org/network/398580.Dshi_1501(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated [...]
lpxA protein networkhttps://string-db.org/network/398580.Dshi_1502acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
Dshi_1503 protein networkhttps://string-db.org/network/398580.Dshi_1503COG: COG3494 - Uncharacterized protein conserved in bacteria, PFAM: pfam06230 Protein of unknown function (DUF1009).
lpxB protein networkhttps://string-db.org/network/398580.Dshi_1504lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid t [...]
Dshi_1505 protein networkhttps://string-db.org/network/398580.Dshi_1505Hypothetical protein; SUPERFAMILY: SSF51294.
trmU protein networkhttps://string-db.org/network/398580.Dshi_1506tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
Dshi_1507 protein networkhttps://string-db.org/network/398580.Dshi_1507Hypothetical protein; PFAM: PF06627; related to DUF1153.
ctrA protein networkhttps://string-db.org/network/398580.Dshi_1508SWISSPROT Q45994: Cell cycle transcriptional regulator; PRODOM: PD000039, PD000329; PFAM: PF00486, PF00072; SMART: SM00448, PROFILE: PS50110; SUPERFAMILY: SSF52172, COG: COG0745 - Response regula [...]
ligA protein networkhttps://string-db.org/network/398580.Dshi_1509DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy sourc [...]
recG protein networkhttps://string-db.org/network/398580.Dshi_1510SWISSPROT P24230: ATP-dependent DNA helicase recGPFAM: pfam00270, pfam00271; COG: COG1200 RecG-like helicase; TIGRFAM: TIGR00643 ATP-dependent DNA helicase RecG; SMART: SM00490; PRINTS: PRK05580.
Dshi_1511 protein networkhttps://string-db.org/network/398580.Dshi_1511Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
ctaA protein networkhttps://string-db.org/network/398580.Dshi_1512Putative cytochrome oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
Dshi_1513 protein networkhttps://string-db.org/network/398580.Dshi_1513Putative tRNA/rRNA methyltransferase; PFAM: pfam00588; COG: COG0565 - rRNA methylase; TIGRFAM: TIGR00050 rRNA methylase, putative, group 1; SpoU family.
Dshi_1514 protein networkhttps://string-db.org/network/398580.Dshi_1514PFAM: pfam02581; COG: COG0352 Thiamine monophosphate synthase; TIGRFAM: TIGR00693 thiamine-phosphate pyrophosphorylase.
hisI protein networkhttps://string-db.org/network/398580.Dshi_1515phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
Dshi_1516 protein networkhttps://string-db.org/network/398580.Dshi_1516Conserved hypothetical protein; PFAM: PF01592, COG: COG0822 - NifU homolog involved in Fe-S cluster formation; related to NIFU.
Dshi_1517 protein networkhttps://string-db.org/network/398580.Dshi_1517Hypothetical protein; PFAM: pfam02653, COG: COG4177- ABC-type branched-chain amino acid transport system / permease component; related to amino acid / sugar transport system.
Dshi_1518 protein networkhttps://string-db.org/network/398580.Dshi_1518Hypothetical protein; PFAM: pfam02653, COG: COG0559- Branched-chain amino acid ABC-type transport system, permease components; similar to branched -chain amino acid transporter, permease subunit.
Dshi_1519 protein networkhttps://string-db.org/network/398580.Dshi_1519Hypothetical protein; Associated with ABC-transport system cluster.
livF2 protein networkhttps://string-db.org/network/398580.Dshi_1520SWISSPROT P22731: High-affinity branched-chain amino acid transport ATP-binding protein livF; PFAM: PF00005; PROSITE: PS50893; SMART: SM00382; COG: COG0410 -ABC-type branched-chain amino acid tra [...]
Dshi_1521 protein networkhttps://string-db.org/network/398580.Dshi_1521SWISSPROT P0A9S7: High-affinity branched-chain amino acid transport ATP-binding protein livG; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382; COG: COG0411 - ABC-type branched-chain amin [...]
Dshi_1522 protein networkhttps://string-db.org/network/398580.Dshi_1522Putative periplasmic ligand-binding protein; PFAM: pfam01094, COG: COG0683 - ABC-type branched-chain amino acid transport systems, periplasmic component, SWISSPROT: P04816: Leucine-specific-bindi [...]
yliI protein networkhttps://string-db.org/network/398580.Dshi_1523Soluble aldose sugar dehydrogenase; COG: COG2133, PFAM (GSDH): pfam07995, Gene3D: G3DSA:2.120.10.30, SUPERFAMILY: SSF50952, SWISSPROT P75804: Soluble aldose sugar dehydrogenase yliI [Precursor].
Dshi_1524 protein networkhttps://string-db.org/network/398580.Dshi_1524Conserved hypothetical protein.
Dshi_1525 protein networkhttps://string-db.org/network/398580.Dshi_1525PFAM: PF01965, PF00165; COG: COG4977 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; AraC family.
aroH protein networkhttps://string-db.org/network/398580.Dshi_1526SWISSPROT P80574: Phospho-2-dehydro-3-deoxyheptonate aldolase aroH; PFAM: PF01474-Class-II DAHP synthetase family, COG: COG3200 - 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, TIGR [...]
Dshi_1527 protein networkhttps://string-db.org/network/398580.Dshi_1527Conserved hypothetical protein; Pfam07310, COG5388.
Dshi_1528 protein networkhttps://string-db.org/network/398580.Dshi_1528Conserved hypothetical protein; PFAM: pfam03755, pfam08340; COG: COG1561 Uncharacterized stress-induced protein; TIGRFAM: TIGR00255 conserved hypothetical protein; similar to YicC-like.
gmk protein networkhttps://string-db.org/network/398580.Dshi_1529Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
Dshi_1530 protein networkhttps://string-db.org/network/398580.Dshi_1530Gamma-class carbonic anhydrase family protein; PFAM: PF00132, COG: COG0663 COG: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily; SUPERFAMILY: SSF51161, SWISSPROT: P0A9W9 Prot [...]
Dshi_1531 protein networkhttps://string-db.org/network/398580.Dshi_1531Conserved hypothetical protein.
phoR protein networkhttps://string-db.org/network/398580.Dshi_1532Histidine kinase; SWISSPROT P08400: Phosphate regulon sensor protein phoR; PFAM: PF02518, PF00512; SMART: SM00387, SM00091; SM00388; COG: COG5002-Signal transduction histidine kinase; putative ph [...]
Dshi_1533 protein networkhttps://string-db.org/network/398580.Dshi_1533SWISSPROT Q4L694: Phosphate-binding protein pstS [precursor]; COG: COG0226 - ABC-type phosphate transport system, periplasmic component; Gene3D: G3DSA:3.40.190.10; SUPERFAMILY: SSF53850; associat [...]
pstC protein networkhttps://string-db.org/network/398580.Dshi_1534Phosphate transport system permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; [...]
pstA protein networkhttps://string-db.org/network/398580.Dshi_1535SWISSPROT P07654: Phosphate transport system permease protein pstCTIGRFAM: TIGR00974 - phosphate ABC transporter, permease protein PstA, PFAM: pfam00528, COG: COG0573 - ABC-type phosphate transpo [...]
pstB protein networkhttps://string-db.org/network/398580.Dshi_1536Phosphate import ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transpo [...]
phoU protein networkhttps://string-db.org/network/398580.Dshi_1537Phosphate transport system protein; Plays a role in the regulation of phosphate uptake.
phoB protein networkhttps://string-db.org/network/398580.Dshi_1538SWISSPROT: P0AFJ5 Phosphate regulon transcriptional regulatory protein, TIGRFAM: TIGR02154 phosphate regulon transcriptional regulatory protein PhoB, PFAM: PF00072, PF00486, COG: COG0745 Response [...]
Dshi_1539 protein networkhttps://string-db.org/network/398580.Dshi_1539SWISSPROT: P45394 Inner membrane protein yrbG, PFAM: PF01699, TIGRFAM: TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein, COG: COG0530 - Ca2+/Na+ antiporter; PANTHER: PTHR10846; sodium/pot [...]
Dshi_1540 protein networkhttps://string-db.org/network/398580.Dshi_1540Protease; COG: COG0265, SUPERFAMILY: SSF50494, PFAM: PF00595, PF00089; peptidase S1B family; precursor.
Dshi_1541 protein networkhttps://string-db.org/network/398580.Dshi_1541Putative amidohydrolase 3; PFAM: PF07969, SUPERFAMILY: SSF51556; COG: COG1574 - Predicted metal-dependent hydrolase with the TIM-barrel fold.
Dshi_1542 protein networkhttps://string-db.org/network/398580.Dshi_1542Hypothetical protein.
Dshi_1543 protein networkhttps://string-db.org/network/398580.Dshi_1543Hypothetical protein; PFAM: PF01734, SUPERFAMILY: SSF52151; COG: COG1752 Predicted esterase of the alpha-beta hydrolase superfamily; similar to Patatin-like phospholipase.
Dshi_1544 protein networkhttps://string-db.org/network/398580.Dshi_1544Short-chain dehydrogenase/reductase family protein; SWISSPROT P99093: 3-oxoacyl-[acyl-carrier-protein] reductase fabG; TIGRFAM: TIGR01963 3-hydroxybutyrate dehydrogenase; PRINTS: PR00080, PR00081 [...]
Dshi_1545 protein networkhttps://string-db.org/network/398580.Dshi_1545Putative extracellular solute-binding protein; COG: COG4166 - ABC-type oligopeptide transport system, periplasmic component; PFAM: PF00496.
Dshi_1546 protein networkhttps://string-db.org/network/398580.Dshi_1546Hypothetical protein; PFAM: PF04367; COG: COG2928 - Uncharacterized conserved protein.
Dshi_1547 protein networkhttps://string-db.org/network/398580.Dshi_1547Putative carbohydrate kinase; SUPERFAMILY: SSF53613 Ribokinase-like; COG: COG0524, Sugar kinase, ribokinase family; PFAM: PF00294; ribokinase family.
rbsB1 protein networkhttps://string-db.org/network/398580.Dshi_1548Ribosomal protein S2; PFAM: pfam00318, TIGRFAM: 1011, PANTHER: PTHR12534, SPRINT: PR00395, PROSITE: PS00963, PS00962, SUPERFAMILY: SSF52313; Belongs to the universal ribosomal protein uS2 family.
tsf protein networkhttps://string-db.org/network/398580.Dshi_1549Translation elongation factor; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis sta [...]
Dshi_1550 protein networkhttps://string-db.org/network/398580.Dshi_1550Putative regulatory protein; PFAM: PF00196, PF03472; PROSITE: PS50043; SUPERFAMILY: SSF75516, SSF46894; COG: COG2197; luxR family.
aroQ protein networkhttps://string-db.org/network/398580.Dshi_15513-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
Dshi_1552 protein networkhttps://string-db.org/network/398580.Dshi_1552Hypothetical protein; SWISSPROT: P44093, PFAM: PF07005; similar to uncharacterized protein HI1011.
Dshi_1553 protein networkhttps://string-db.org/network/398580.Dshi_1553AraD-like aldolase/epimerase; SUPERFAMILY: SSF53639; PFAM: PF00596; COG: COG0235, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
Dshi_1554 protein networkhttps://string-db.org/network/398580.Dshi_1554Putative isomerase; PFAM: PF01261, Gene3D: G3DSA:3.20.20.150, SUPERFAMILY: SSF51658, SWISSPROT: Q6NUD4, P30147; COG: COG3622; Belongs to the hyi family.
Dshi_1555 protein networkhttps://string-db.org/network/398580.Dshi_1555Putative transcriptional regulator; PFAM: PF01381, PF07883; SUPERFAMILY: SSF51182; Gene3D: G3DSA:1.10.260.40; HTH type.
Dshi_1556 protein networkhttps://string-db.org/network/398580.Dshi_1556Putative ATP-dependent AMP-binding enzyme; COG: COG0318, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PFAM: PF00501, PANTHER: PTHR11968, PROSITE: PS00455, Gene3D: G3DSA:3.40.50.980, G3 [...]
Dshi_1557 protein networkhttps://string-db.org/network/398580.Dshi_1557Putative DSBA oxidoreductase; PFAM: PF01323, SUPERFAMILY: SSF52833, COG: COG2761, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
Dshi_1558 protein networkhttps://string-db.org/network/398580.Dshi_1558Hypothetical protein.
Dshi_1559 protein networkhttps://string-db.org/network/398580.Dshi_1559Major facilitator superfamily transporter; SWISSPROT: P28246, TIGRFAM: TIGR00710- Drug resistance transporter Bcr/CflA subfamily, PANTHER: PTHR10074 Major facilitator subfamily member, Bicyclomyc [...]
Dshi_1560 protein networkhttps://string-db.org/network/398580.Dshi_1560Conserved hypothetical protein.
mfd protein networkhttps://string-db.org/network/398580.Dshi_1561Transcription repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated tr [...]
Dshi_1562 protein networkhttps://string-db.org/network/398580.Dshi_1562Conserved hypothetical protein.
hemB1 protein networkhttps://string-db.org/network/398580.Dshi_1563Delta-aminolevulinic acid dehydratase; SWISSPROT: Q59643; PFAM: PF00490, PANTHER: PTHR11458; Belongs to the ALAD family.
Dshi_1564 protein networkhttps://string-db.org/network/398580.Dshi_1564Hypothetical protein; PROSITE: PS51257, PFAM: pfam04366, COG: COG2930 - Uncharacterized conserved protein.
Dshi_1565 protein networkhttps://string-db.org/network/398580.Dshi_1565Acylase precursor; PFAM: PF01804, COG: COG2366 - Protein related to penicillin acylase; putative penicillin acylase.
hflX protein networkhttps://string-db.org/network/398580.Dshi_1566GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase su [...]
hfq protein networkhttps://string-db.org/network/398580.Dshi_1567Putative protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes [...]
trkH protein networkhttps://string-db.org/network/398580.Dshi_1568Potassium uptake protein; SWISSPROT: Q9L6L2, P23849 - Trk system potassium uptake protein trkH; COG: COG0168 - Trk-type K+ transport systems, membrane components; PFAM: PF02386.
trkA protein networkhttps://string-db.org/network/398580.Dshi_1569Trk system potassium uptake protein; SWISSPROT: P0AGI8 - NAD(P)-binding Rossmann-fold domains; COG: COG0569 - K+ transport systems, NAD-binding component; PFAM: PF02254, PF02080; SUPERFAMILY: SSF [...]
Dshi_1570 protein networkhttps://string-db.org/network/398580.Dshi_1570Conserved hypothetical protein.
Dshi_1571 protein networkhttps://string-db.org/network/398580.Dshi_1571Conserved hypothetical protein.
ntrX protein networkhttps://string-db.org/network/398580.Dshi_1572SWISSPROT: P03029 - Nitrogen assimilation regulatory protein ntrX; PFAM: PF00072, PF00158, PF02954; SUPERFAMILY: SSF52172, SSF52540; COG: COG2204; sigma factor 54.
ntrY protein networkhttps://string-db.org/network/398580.Dshi_1573Histidine kinase; SWISSPROT Q04850: Nitrogen regulation protein ntrY; PANTHER: Two-component Histidine Kinase; COG: COG5000 & PIRSF - Signal transduction histidine kinase involved in nitrogen fix [...]
ntrC protein networkhttps://string-db.org/network/398580.Dshi_1574SWISSPROT P10577: Nitrogen assimilation regulatory protein; COG: COG2204 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: PF02954, PF00072, PF00 [...]
ntrB protein networkhttps://string-db.org/network/398580.Dshi_1575SWISSPROT P09431, P0AFB5: Nitrogen regulation protein ntrB; COG: COG3852 - Signal transduction histidine kinase, nitrogen specific; PFAM: PF00512, PF02518; SMART: SM00091.
dus protein networkhttps://string-db.org/network/398580.Dshi_1576tRNA-dihydrouidine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; B [...]
ispDF protein networkhttps://string-db.org/network/398580.Dshi_1577Bifunctional enzyme ispD/ispF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and [...]
Dshi_1578 protein networkhttps://string-db.org/network/398580.Dshi_1578Putative phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
Dshi_1579 protein networkhttps://string-db.org/network/398580.Dshi_1579CinA-like protein; TIGRFAM: TIGR00199 competence/damage-inducible protein CinA C-terminal domain; COG: COG1546 - Uncharacterized protein (competence- and mitomycin-induced); PFAM: pfam02464; Belo [...]
Dshi_1580 protein networkhttps://string-db.org/network/398580.Dshi_1580Putative polyketide cyclase / dehydrase; COG: COG2867-Oligoketide cyclase/lipid transport protein; PFAM: PF03364.
hpt protein networkhttps://string-db.org/network/398580.Dshi_1581SWISSPROT P0A9M2: Hypoxanthine phosphoribosyltransferase, also high similarity to hypoxanthine-guanine phosphoribosyltransferase (SWISSPROT P37171); COG: COG0634 Hypoxanthine-guanine phosphoribos [...]
Dshi_1582 protein networkhttps://string-db.org/network/398580.Dshi_1582Hypothetical protein; Similar to transmembrane transport protein.
lipA protein networkhttps://string-db.org/network/398580.Dshi_1583Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, there [...]
Dshi_1584 protein networkhttps://string-db.org/network/398580.Dshi_1584Conserved hypothetical protein.
Dshi_1585 protein networkhttps://string-db.org/network/398580.Dshi_1585Conserved hypothetical protein.
mttb protein networkhttps://string-db.org/network/398580.Dshi_1586SWISSPROT O93658: Trimethylamine methyltransferase mttB; COG: COG5598 - Trimethylamine:corrinoid methyltransferase; PFAM: pfam06253; Belongs to the trimethylamine methyltransferase family.
guaA protein networkhttps://string-db.org/network/398580.Dshi_1587GMP synthase; Catalyzes the synthesis of GMP from XMP.
Dshi_1588 protein networkhttps://string-db.org/network/398580.Dshi_1588Hypothetical protein; COG: COG1434-Uncharacterized conserved protein; PFAM: pfam02698- Uncharacterized ACR, COG1434.
Dshi_1589 protein networkhttps://string-db.org/network/398580.Dshi_1589Hypothetical protein; SWISSPROT Q68XV0: S-adenosylmethionine uptake transporter; PFAM: pfam00892; similar to S-adenosylmethionine uptake transporter.
Dshi_1590 protein networkhttps://string-db.org/network/398580.Dshi_1590Porin; SUPERFAMILY; SST56935-Porins; PFAM: PF03349-Outer membrane protein transport protein (OMPP1/FadL/TodX); COG: COG2067-Long-chain fatty acid transport protein.
Dshi_1591 protein networkhttps://string-db.org/network/398580.Dshi_1591Hypothetical protein; PFAM: PF00892, SUPERFAMILY: SSF103481; similar to Multidrug resistance efflux transporter EmrE.
Dshi_1592 protein networkhttps://string-db.org/network/398580.Dshi_1592Conserved hypothetical protein; SUPERFAMILY: SSF52540.
metA protein networkhttps://string-db.org/network/398580.Dshi_1593Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
Dshi_1594 protein networkhttps://string-db.org/network/398580.Dshi_1594Putative alpha/beta hydrolase; COG: COG0596- Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); PFAM: pfam00561; SPRINTS: PR00111.
Dshi_1595 protein networkhttps://string-db.org/network/398580.Dshi_1595Putative polyphosphate kinase 2; PFAM: PF03976.
Dshi_1596 protein networkhttps://string-db.org/network/398580.Dshi_1596Hypothetical protein; PFAM: PF00440; COG: COG1309-Transcriptional regulator; similar to HTH-type transcriptional regulator (tetR family).
potA1 protein networkhttps://string-db.org/network/398580.Dshi_1597SWISSPROT P69874: Spermidine/putrescine import ATP-binding protein potA; COG: COG3842-ABC-type spermidine/putrescine transport systems, ATPase components; TIGRFAM: TIGR01187- spermidine/putrescin [...]
Dshi_1598 protein networkhttps://string-db.org/network/398580.Dshi_1598SWISSPROT P0AFR9: Inner membrane ABC transporter permease protein ydcV, P0AFK6: Spermidine/putrescine transport system permease protein potC; COG: COG1177-ABC-type spermidine/putrescine transport [...]
potB protein networkhttps://string-db.org/network/398580.Dshi_1599SWISSPROT P0AFK4: Spermidine/putrescine transport system permease protein potB; COG: COG1176-ABC-type spermidine/putrescine transport system, permease component I; PFAM: pfam00528; PROSITE: PS509 [...]
Dshi_1600 protein networkhttps://string-db.org/network/398580.Dshi_1600Monooxygenase; COG: COG2329-Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides; PFAM: pfam03992; SUPERFAMILY: SSF54909.
rpsI protein networkhttps://string-db.org/network/398580.Dshi_1601SWISSPROT P0A7X3: 30S ribosomal protein S9 [rpsI]; COG:COG0103-Ribosomal protein S9; PFAM: pfam00380; SUPERFAMILY: SSF54211; Belongs to the universal ribosomal protein uS9 family.
rplM protein networkhttps://string-db.org/network/398580.Dshi_160250S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages [...]
Dshi_1603 protein networkhttps://string-db.org/network/398580.Dshi_1603Putative thioesterase superfamily protein; TIGRFAM: TIGR00369-Phenylacetic acid degradation-related protein; COG: COG2050-Uncharacterized protein, possibly involved in aromatic compounds cataboli [...]
Dshi_1604 protein networkhttps://string-db.org/network/398580.Dshi_1604COG: COG1024-Enoyl-CoA hydratase/carnithine racemase; PFAM: pfam00378; SWISSPROT P76082: Probable enoyl-CoA hydratase paaF.
Dshi_1605 protein networkhttps://string-db.org/network/398580.Dshi_1605COG: COG0741-Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); PFAM: PF01464.
ssb protein networkhttps://string-db.org/network/398580.Dshi_1606Single stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of act [...]
Dshi_1607 protein networkhttps://string-db.org/network/398580.Dshi_1607Hypothetical protein.
aroB protein networkhttps://string-db.org/network/398580.Dshi_16083-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
aroK protein networkhttps://string-db.org/network/398580.Dshi_1609Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
Dshi_1610 protein networkhttps://string-db.org/network/398580.Dshi_1610Conserved hypothetical protein.
xerD protein networkhttps://string-db.org/network/398580.Dshi_1611Tyrosine recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimer [...]
Dshi_1612 protein networkhttps://string-db.org/network/398580.Dshi_1612Putative phosphatase; COG: COG0622 - Predicted phosphoesterase; SUPERFAMILY: Metallo-dependent phosphatases; Gene3D: [PDB] Hydrolase.
Dshi_1613 protein networkhttps://string-db.org/network/398580.Dshi_1613SWISSPROT P37908: UPF0053 inner membrane protein yfjD; PFAM: pfam01595, pfam03471, pfam00571; PANTHER: PTHR22777.
yjgR protein networkhttps://string-db.org/network/398580.Dshi_1614Hypothetical protein; SWISSPROT P39342: Uncharacterized protein yjgR; PFAM: pfam05872; SUPERFAMILY: SSF52540; Gene3D: G3DSA:3.40.50.300; similar to uncharacterized protein yjgR (E.coli).
Dshi_1615 protein networkhttps://string-db.org/network/398580.Dshi_1615COG: COG5342 - Invasion protein B, involved in pathogenesis, PFAM: pfam06776; similar to Invasion protein B.
Dshi_1616 protein networkhttps://string-db.org/network/398580.Dshi_1616Beta ketoacyl synthase; PANTHER: Polyketide synthase-related; COG: COG0304 - 3-oxoacyl-(acyl-carrier-protein) synthase; SWISSPROT P04684: Nodulation protein E, P0AAI5: 3-oxoacyl-[acyl-carrier-pro [...]
Dshi_1617 protein networkhttps://string-db.org/network/398580.Dshi_1617SWISSPROT P0A6A8: Acyl carrier protein; TIGRFAM: TIGR00517; PFAM: PF00550; PROSITE: PS50075, PS00012; phosphopantetheine attachment site.
lpxD protein networkhttps://string-db.org/network/398580.Dshi_1618UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lip [...]
Dshi_1619 protein networkhttps://string-db.org/network/398580.Dshi_1619COG: COG2989 - Uncharacterized protein conserved in bacteria; PFAM: pfam01471; SWISSPROT P22525:Uncharacterized protein ycbB; related to uncharacterized protein ycbB (E.coli).
Dshi_1620 protein networkhttps://string-db.org/network/398580.Dshi_1620COG: COG3108 - Uncharacterized protein conserved in bacteria; PFAM: pfam05951; SWISSPROT P0AB06: Uncharacterized protein ycbK; similar to uncharcaterized protein ycbK.
Dshi_1621 protein networkhttps://string-db.org/network/398580.Dshi_1621SWISSPROT: 6-phosphofructokinase isozyme 2 (Phosphofructokinase-2) [pfkB]; PROSITE: PS00583; PFAM: PF00294; SUPERFAMILY: SSF53613; Belongs to the carbohydrate kinase PfkB family.
Dshi_1622 protein networkhttps://string-db.org/network/398580.Dshi_1622SWISSPROT Q99289: Thermolabile hemolysin [Precursor]; PFAM: PF00353; PROSITE: PS00330; SPRINT: PR00313; SUPERFAMILY: SSF51120; Gene3D: G3DSA:2.150.10.10; COG: COG2931; Calcium binding.
sufS protein networkhttps://string-db.org/network/398580.Dshi_1623Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
Dshi_1624 protein networkhttps://string-db.org/network/398580.Dshi_1624Conserved hypothetical protein; Associated with suf system.
Dshi_1625 protein networkhttps://string-db.org/network/398580.Dshi_1625Conserved hypothetical protein; Associated with suf sytem.
sufD protein networkhttps://string-db.org/network/398580.Dshi_1626sufD; SWISSPROT P77689: Protein sufD; COG: COG0719 - ABC-type transport system involved in Fe-S cluster assembly, permease component; PFAM: pfam01458; SUPERFAMILY SSF101960: Stabilizer of iron tr [...]
sufC protein networkhttps://string-db.org/network/398580.Dshi_1627SWISSPROT P77499: Probable ATP-dependent transporter sufC; TIGRFAM: TIGR01978 FeS assembly ATPase SufC; PANTHER: PTHR19222:SF6-ABC TRANSPORTER; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM [...]
Dshi_1628 protein networkhttps://string-db.org/network/398580.Dshi_1628UPF0145 protein; PFAM: PF01906; COG: COG0393 - Uncharacterized conserved protein; Belongs to the UPF0145 family.
Dshi_1629 protein networkhttps://string-db.org/network/398580.Dshi_1629Hypothetical protein.
Dshi_1630 protein networkhttps://string-db.org/network/398580.Dshi_1630Hypothetical protein.
sufB protein networkhttps://string-db.org/network/398580.Dshi_1631sufB; SWISSPROT P77522: Protein sufB; TIGRFAM: TIGR01980 FeS assembly protein SufB; COG: COG0719 - ABC-type transport system involved in Fe-S cluster assembly, permease component; SUPERFAMILY: SS [...]
nifS protein networkhttps://string-db.org/network/398580.Dshi_1632SWISSPROT P05341: Cysteine desulfurase; COG: COG1104 - Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; PANTHER: Cysteine desulforase; PFAM: PF00266; Gene3D: G3DSA:3.40.64 [...]
iscR protein networkhttps://string-db.org/network/398580.Dshi_1633SWISSPROT P0AGK8: HTH-type transcriptional regulator iscR; TIGRFAM: TIGR00738 rrf2 family protein (putative transcriptional regulator); COG: COG1959 - Predicted transcriptional regulator; PFAM: P [...]
Dshi_1634 protein networkhttps://string-db.org/network/398580.Dshi_1634COG: COG2945 - Predicted hydrolase of the alpha/beta superfamily; PFAM: pfam00561; SUPERFAMILY: SSF53474.
Dshi_1635 protein networkhttps://string-db.org/network/398580.Dshi_1635Conserved hypothetical protein.
Dshi_1636 protein networkhttps://string-db.org/network/398580.Dshi_1636Conserved hypothetical protein; PFAM: pfam01988; COG: COG1814 - Uncharacterized membrane protein.
Dshi_1637 protein networkhttps://string-db.org/network/398580.Dshi_1637Conserved hypothetical protein; PFAM: PF02588; COG: COG1284 - Uncharacterized conserved protein.
emrE protein networkhttps://string-db.org/network/398580.Dshi_1638Efflux-multidrug resistance protein; SUPERFAMILY: Multidrug resistance efflux transporter EmrE; SWISSPROT P23895: Multidrug transporter emrE; PFAM: PF00893; SUPERFAMILY: SSF103481.
Dshi_1639 protein networkhttps://string-db.org/network/398580.Dshi_1639Hypothetical protein.
Dshi_1640 protein networkhttps://string-db.org/network/398580.Dshi_1640Hypothetical protein; PROSITE: PS51257.
Dshi_1641 protein networkhttps://string-db.org/network/398580.Dshi_1641Conserved hypothetical protein; PFAM: PF07045.
alaS protein networkhttps://string-db.org/network/398580.Dshi_1642alanyl-tRNA synthase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA( [...]
recA protein networkhttps://string-db.org/network/398580.Dshi_1643Bacterial DNA recombination; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybri [...]
Dshi_1644 protein networkhttps://string-db.org/network/398580.Dshi_1644Histidine kinase; COG: COG4191 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system; SMART: SM0009, SM00448, SM00387, SM00388; PROSITE: PS50110, PS50109; PFAM: PF00 [...]
rsmB2 protein networkhttps://string-db.org/network/398580.Dshi_1645SWISSPROT P36929: Ribosomal RNA small subunit methyltransferas B / rRNA (cytosine-C(5)-)-methyltransferase; PFAM: PF01189; SUPERFAMILY: SSF53335; Belongs to the class I-like SAM-binding methyltra [...]
guaB protein networkhttps://string-db.org/network/398580.Dshi_1646Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesi [...]
hpcH protein networkhttps://string-db.org/network/398580.Dshi_1647SWISSPROT Q47098: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: PF03328; Gene3D: G3DSA:3.20.20.60; SUPERFAMILY: SSF51621; Belongs to the HpcH/HpaI aldolase family.
malK protein networkhttps://string-db.org/network/398580.Dshi_1648SWISSPROT P68187: Maltose/maltodextrin import ATP-binding protein malK; COG: COG3839 - ABC-type sugar transport systems, ATPase components; PFAM: PF00005, PF08402; SMART: SM00382; SUPERFAMILY: SS [...]
Dshi_1649 protein networkhttps://string-db.org/network/398580.Dshi_1649Alpha-glucosidase; SWISSPROT Q9Z3R8: Probable alpha-glucosidase; COG: COG0366 - Glycosidases; PFAM: PF00128; SMART: SM00642; SUPERFAMILY: SSF51011, SSF51445.
Dshi_1650 protein networkhttps://string-db.org/network/398580.Dshi_1650SWISSPROT Q9Z3R7: Alpha-glucoside transport system permease protein aglG, P77716: Inner membrane ABC transporter permease protein ycjP; PFAM: PF00528; PROSITE: PS50928; associated with alpha-gluc [...]
Dshi_1651 protein networkhttps://string-db.org/network/398580.Dshi_1651SWISSPROT P0AFR7: Inner membrane ABC transporter permease protein ycjO, Q9Z3R6: Alpha-glucoside transport system permease protein aglF; PFAM: PF00528; PROSITE: PS50928; associated with alpha-gluc [...]
Dshi_1652 protein networkhttps://string-db.org/network/398580.Dshi_1652Putative bacterial solute-binding protein 1 family; SWISSPROT Q9Z3R5: Alpha-glucosides-binding periplasmic protein aglE [Precursor]; COG: COG1653 - ABC-type sugar transport system, periplasmic co [...]
Dshi_1653 protein networkhttps://string-db.org/network/398580.Dshi_1653SWISSPROT Q9Z3R4: HTH-type transcriptional regulator aglR, P21867: HTH-type transcriptional regulator rafR; COG: COG1609 - Transcriptional regulators; PFAM: PF00532; SMART: SM00354; PROSITE: PS50 [...]
bglA protein networkhttps://string-db.org/network/398580.Dshi_1654SWISSPROT Q08638: Beta-glucosidase A; COG: COG2723 - Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; PANTHER: GLYCOSIDE HYDROLASES (PTHR10353); PFAM: PF00232; SPRINT: PR00131; PR [...]
glk protein networkhttps://string-db.org/network/398580.Dshi_1655Glucokinase; SWISSPROT P64254: Glucokinase; TIGRFAM: TIGR00749 glucokinase, proteobacterial type; COG: COG0837; PFAM: PF02685; SUPERFAMILY: SSF53067; Belongs to the bacterial glucokinase family.
Dshi_1656 protein networkhttps://string-db.org/network/398580.Dshi_1656ABC-3 metal transporter; SWISSPROT Q55282: Manganese transport system membrane protein mntB, P44660: Probable iron transport system membrane protein HI0359; COG: COG1108 - ABC-type Mn2+/Zn2+ tran [...]
Dshi_1657 protein networkhttps://string-db.org/network/398580.Dshi_1657ABC-3 metal transporter; SWISSPROT Q55282: Manganese transport system membrane protein mntB, P44661: Probable iron transport system membrane protein HI0360; COG: COG1108 - ABC-type Mn2+/Zn2+ tran [...]
Dshi_1658 protein networkhttps://string-db.org/network/398580.Dshi_1658SWISSPROT P15031: Iron(III) dicitrate transport ATP-binding protein fecE, Q55281: Manganese transport system ATP-binding protein mntA, P44662: Probable iron transport system ATP-binding protein H [...]
Dshi_1659 protein networkhttps://string-db.org/network/398580.Dshi_1659Metal ABC transporter substrate-binding lipoprotein; SWISSPROT Q57449: Uncharacterized periplasmic iron-binding protein HI0362, P31304: Manganese ABC transporter substrate-binding lipoprotein [Pr [...]
Dshi_1660 protein networkhttps://string-db.org/network/398580.Dshi_1660Transcriptional regulator; TIGRFAM: TIGR00738; PFAM: PF02082; SUPERFAMILY: SSF46785.
Dshi_1661 protein networkhttps://string-db.org/network/398580.Dshi_1661Transcription antitermination regulatory protein; COG: COG3707 - Response regulator with putative antiterminator output domain; PFAM: PF00072, PF03861; SUPERFAMILY: SSF52172.
Dshi_1662 protein networkhttps://string-db.org/network/398580.Dshi_1662Periplasmic binding protein-like II; COG: COG0715 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; SUPERFAMILY: SSF53850; associated with nitrate transport syst [...]
Dshi_1663 protein networkhttps://string-db.org/network/398580.Dshi_1663Periplasmic binding protein-like II; COG: COG0715 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; SUPERFAMILY: SSF53850; associated with nitrate transport syst [...]
Dshi_1664 protein networkhttps://string-db.org/network/398580.Dshi_1664Putative ABC transporter permease protein; COG: COG0600 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; associated with nitrate transport system.
Dshi_1665 protein networkhttps://string-db.org/network/398580.Dshi_1665ABC transporter; TIGRFAM: TIGR01184 nitrate transport ATP-binding subunits C and D; COG: COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: PF00005; SMART: [...]
Dshi_1666 protein networkhttps://string-db.org/network/398580.Dshi_1666Putative flavohemoglobin; COG: COG1017 - Hemoglobin-like flavoprotein; PFAM: PF00042-Globin; SUPERFAMILY: Globin-like SSF46458; Gene3D: G3DSA:1.10.490.10; SWISSPROT P04252: Bacterial hemoglobin; [...]
nasD protein networkhttps://string-db.org/network/398580.Dshi_1667Nitrite reductase [NAD(P)H], large subunit; SWISSPROT P42435: Nitrite reductase [NAD(P)H]; TIGRFAM: TIGR02374 nitrite reductase [NAD(P)H], large subunit; COG: COG1251 - NAD(P)H-nitrite reductase; [...]
nasE protein networkhttps://string-db.org/network/398580.Dshi_1668SWISSPROT P42436: assimilatory nitrite reductase [NAD(P)H], small subunit; TIGRFAM: TIGR02378 nitrite reductase [NAD(P)H], small subunit; COG: COG2146 - Ferredoxin subunits of nitrite reductase a [...]
nasA protein networkhttps://string-db.org/network/398580.Dshi_1669SWISSPROT Q06457: Nitrate reductase; COG: COG3383 - Uncharacterized anaerobic dehydrogenase; PFAM: pfam00384, pfam01568, pfam04324, pfam04879; Belongs to the prokaryotic molybdopterin-containing [...]
Dshi_1670 protein networkhttps://string-db.org/network/398580.Dshi_1670Glycosyl transferase; SWISSPROT Q8R9M6: Anthranilate phosphoribosyltransferase; COG: COG0547 - Anthranilate phosphoribosyltransferase; PFAM: PF02885; Gene3D: G3DSA:3.40.1030.10; SUPERFAMILY: SSF4 [...]
cysG protein networkhttps://string-db.org/network/398580.Dshi_1671Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the [...]
rlmE protein networkhttps://string-db.org/network/398580.Dshi_1672Ribosomal RNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
Dshi_1673 protein networkhttps://string-db.org/network/398580.Dshi_1673Phosphatase; COG: COG0248 - Exopolyphosphatase; SWISSPROT P25552: Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; PFAM: PF02541; Gene3D: G3DSA:3.30.420.150, G3DSA:3.30.420.40; SUPERFAMILY [...]
Dshi_1674 protein networkhttps://string-db.org/network/398580.Dshi_1674Conserved hypothetical protein.
Dshi_1675 protein networkhttps://string-db.org/network/398580.Dshi_1675Hypothetical protein; COG:COG0685, Gene3D: G3DSA:3.20.20.220.
Dshi_1676 protein networkhttps://string-db.org/network/398580.Dshi_1676HAD-like hydrolase; TIGRFAMS: TIGR01509 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; COG: COG0637 - Predicted phosphatase/phosphohexomutase; PFAM: [...]
Dshi_1677 protein networkhttps://string-db.org/network/398580.Dshi_1677Putative dehypteroate synthase; COG: COG1410 - Methionine synthase I, cobalamin-binding domain; SUPERFAMILY SSF51717 & Gene3D G3DSA:3.20.20.20: Dihydropteroate synthetase-like; PFAM: PF00809; PRO [...]
Dshi_1678 protein networkhttps://string-db.org/network/398580.Dshi_1678Conserved hypothetical protein.
Dshi_1679 protein networkhttps://string-db.org/network/398580.Dshi_1679Conserved hypothetical protein.
Dshi_1680 protein networkhttps://string-db.org/network/398580.Dshi_1680Hypothetical protein; COG: COG3894 - Uncharacterized metal-binding protein; PFAM: PF00111; PROSITE: PS51085; similar to ferredoxin.
Dshi_1681 protein networkhttps://string-db.org/network/398580.Dshi_1681Putative Thioesterase/thiol ester dehydrase-isomerase; COG: COG0824 - Predicted thioesterase; TIGRFAM: TIGR00051-conserved hypothetical protein TIGR00051; PFAM: PF03061; SUPERFAMILY: SSF54637.
pgi protein networkhttps://string-db.org/network/398580.Dshi_1682COG: COG0166 - Glucose-6-phosphate isomerase; PFAM: PF00342; SPRINT: PR00662; PROSITE: PS00174, PS00765; SUPERFAMILY: SSF53697; Belongs to the GPI family.
pgl protein networkhttps://string-db.org/network/398580.Dshi_1683Putative 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
zwf protein networkhttps://string-db.org/network/398580.Dshi_1684Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
Dshi_1685 protein networkhttps://string-db.org/network/398580.Dshi_1685Hypothetical protein; COG: COG0535 - Predicted Fe-S oxidoreductases; PFAM: PF04055.
Dshi_1686 protein networkhttps://string-db.org/network/398580.Dshi_1686Hypothetical protein; COG: COG1305 - Transglutaminase-like enzymes, putative cysteine proteases; PFAM: pfam01841; SMART: SM00460; SUPERFAMILY: SSF54001; transglutaminase-like.
Dshi_1687 protein networkhttps://string-db.org/network/398580.Dshi_1687Putative HNH endonuclease; COG: COG1403 - Restriction endonuclease; PFAM: PF01844-HNH endonuclease; SMART: SM00507-HNH nucleases.
Dshi_1688 protein networkhttps://string-db.org/network/398580.Dshi_1688Putative phospholipase / carboxylesterase; COG: COG0400 - Predicted esterase; PFAM: PF02230.
Dshi_1689 protein networkhttps://string-db.org/network/398580.Dshi_1689DNA-glycosylase family protein; Similar to SWISSPROT P04395: DNA-3-methyladenine glycosylase 2, alkylbase DNA glycosidase alkA family member; COG: COG0122 - 3-methyladenine DNA glycosylase/8-oxog [...]
cobK protein networkhttps://string-db.org/network/398580.Dshi_1690SWISSPROT P21920: Precorrin-6A reductase; PFAM PF02571: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: TIGR00715; COG: COG2099.
cbiD protein networkhttps://string-db.org/network/398580.Dshi_1691Cobalamin (vitamin B12) biosynthesis CbiD protein; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
cobA1 protein networkhttps://string-db.org/network/398580.Dshi_1692SWISSPROT P21631: Uroporphyrinogen-III C-methyltransferase; TIGRFAM: TIGR01469 uroporphyrin-III C-methyltransferase; COG: COG0007; PFAM: pfam00590; Gene3D: G3DSA:3.30.950.10, G3DSA:3.40.1010.10; [...]
cobB protein networkhttps://string-db.org/network/398580.Dshi_1693Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nit [...]
Dshi_1694 protein networkhttps://string-db.org/network/398580.Dshi_1694Major facilitator superfamiy transporter; PFAM: PF07690; PROSITE: PS50850.
Dshi_1695 protein networkhttps://string-db.org/network/398580.Dshi_1695Conserved hypothetical protein; COG: COG1562 - Phytoene/squalene synthetase.
Dshi_1696 protein networkhttps://string-db.org/network/398580.Dshi_1696alpha-IPM synthetase/homocitrate synthase family transferase; TIGRFAM: TIGR00977 2-isopropylmalate synthase/homocitrate synthase family protein; COG: COG0119; PFAM: PF00682, PF08502; PROSITE: PS0 [...]
Dshi_1697 protein networkhttps://string-db.org/network/398580.Dshi_1697Hypothetical protein.
cysS protein networkhttps://string-db.org/network/398580.Dshi_1698TIGRFAM: TIGR00435 cysteinyl-tRNA synthetase; COG: COG0215 - Cysteinyl-tRNA synthetase; PFAM: PF01406, PF09190; PANTHER: PTHR10890; class la; Belongs to the class-I aminoacyl-tRNA synthetase fami [...]
Dshi_1699 protein networkhttps://string-db.org/network/398580.Dshi_1699COG: COG3637 - Opacity protein and related surface antigens.
Dshi_1700 protein networkhttps://string-db.org/network/398580.Dshi_1700Short-chain dehydrogenase/reductase family protein; PFAM: PF00106-short chain dehydrogenase; PROSITE: PS00061-Short-chain dehydrogenases/reductases family signature; Belongs to the short-chain de [...]
Dshi_1701 protein networkhttps://string-db.org/network/398580.Dshi_1701SWISSPROT P39832: High-affinity zinc uptake system membrane protein znuB; PFAM: PF00950; COG: COG1108 - ABC-type Mn2+/Zn2+ transport systems, permease components; ABC-3 family; znuB.
znuC protein networkhttps://string-db.org/network/398580.Dshi_1702Zinc import ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superf [...]
Dshi_1703 protein networkhttps://string-db.org/network/398580.Dshi_1703SWISSPROT P0AC51: Zinc uptake regulation protein; PRODOM: PD002003; PFAM: pfam01475; zur; Belongs to the Fur family.
Dshi_1704 protein networkhttps://string-db.org/network/398580.Dshi_1704SWISSPROT P39172: High-affinity zinc uptake system protein znuA [Precursor]; COG: COG4531 - ABC-type Zn2+ transport system, periplasmic component/surface adhesin; PFAM: PF01297; znuA.
Dshi_1705 protein networkhttps://string-db.org/network/398580.Dshi_1705Conserved hypothetical protein.
msrB2 protein networkhttps://string-db.org/network/398580.Dshi_1706TIGRFAM: TIGR00357 methionine-R-sulfoxide reductase; COG: COG0229 - Conserved domain frequently associated with peptide methionine sulfoxide reductase; PFAM: pfam01641.
Dshi_1707 protein networkhttps://string-db.org/network/398580.Dshi_1707Putative acyl-CoA N-acyltransferases (Nat) superfamily protein; SUPERFAMILY: SSF55729; COG: COG3176 - Putative hemolysin.
Dshi_1708 protein networkhttps://string-db.org/network/398580.Dshi_1708Hypothetical protein; PFAM: PF01396, PF08378; SUPERFAMILY: SSF57783; nuclease related.
mscS protein networkhttps://string-db.org/network/398580.Dshi_1709SWISSPROT P0C0S1: Small-conductance mechanosensitive channel; COG: COG0668 - Small-conductance mechanosensitive channel; PFAM: PF00924; SUPERFAMILY: SSF50182, SSF82861, SSF82689.
Dshi_1710 protein networkhttps://string-db.org/network/398580.Dshi_1710Putative monothiol glutaredoxin; SWISSPROT P0AC69: Glutaredoxin-4; PFAM: Glutaredoxin; TIGRFAM: TIGR00365 glutaredoxin-related protein; COG: COG0278; Belongs to the glutaredoxin family. Monothiol [...]
Dshi_1711 protein networkhttps://string-db.org/network/398580.Dshi_1711Hypothetical protein.
Dshi_1712 protein networkhttps://string-db.org/network/398580.Dshi_1712Hypothetical protein; PFAM: PF01722; PANTHER: PTHR12735; Gene3D: G3DSA:3.30.300.90; COG: COG0271 - Stress-induced morphogen (activity unknown); similar to bolA-like proteins; Belongs to the BolA/ [...]
purL protein networkhttps://string-db.org/network/398580.Dshi_1713Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion [...]
Dshi_1714 protein networkhttps://string-db.org/network/398580.Dshi_1714ABC-transporter ATP-binding protein; COG: COG0488 - ATPase components of ABC transporters with duplicated ATPase domains; PFAM: PF00005; PROSITE: PS00211, PS50893; SUPERFAMILY: SSF52540; Gene3D: [...]
Dshi_1715 protein networkhttps://string-db.org/network/398580.Dshi_1715Hypothetical protein; SUPERFAMILY: SSF52540; Gene3D: G3DSA:3.40.50.300; PFAM: pfam00685; similar to sulfotransferase.
Dshi_1716 protein networkhttps://string-db.org/network/398580.Dshi_1716COG: COG2913 - Small protein A (tmRNA-binding).
Dshi_1717 protein networkhttps://string-db.org/network/398580.Dshi_1717Conserved hypothetical protein; COG: COG1399 - Predicted metal-binding, possibly nucleic acid-binding protein; PFAM: PF02620.
rpmF protein networkhttps://string-db.org/network/398580.Dshi_1718TIGRFAM: TIGR01031-ribosomal protein L32; PFAM: pfam01783; Belongs to the bacterial ribosomal protein bL32 family.
plsX protein networkhttps://string-db.org/network/398580.Dshi_1719Fatty acid/phospholipid synthesis protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty a [...]
fabH protein networkhttps://string-db.org/network/398580.Dshi_17203-oxoacyl-[acyl-carrier-protein] synthase 3; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first c [...]
ihfA protein networkhttps://string-db.org/network/398580.Dshi_1721Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in tra [...]
Dshi_1722 protein networkhttps://string-db.org/network/398580.Dshi_1722Hypothetical protein; PFAM: PF00376; SMART: SM00422; COG: COG0789 - Predicted transcriptional regulators; similar to MerR family regulatory protein.
Dshi_1723 protein networkhttps://string-db.org/network/398580.Dshi_17232'-deoxycytidine 5'-triphosphate deaminase; PFAM: 2-deoxycytidine 5-triphosphate deaminase (DCD); COG: COG0717 - Deoxycytidine deaminase.
Dshi_1724 protein networkhttps://string-db.org/network/398580.Dshi_1724Putative segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pul [...]
Dshi_1725 protein networkhttps://string-db.org/network/398580.Dshi_1725Putative Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pul [...]
nagZ protein networkhttps://string-db.org/network/398580.Dshi_1726Beta-hexosamidase; PFAM: PF00933; PROSITE: PS00775; SWISSPROT P75949: Beta-hexosaminidase; COG: COG1472 - Beta-glucosidase-related glycosidases.
Dshi_1727 protein networkhttps://string-db.org/network/398580.Dshi_1727PFAM: PF05036; related to proteins involved in sporulation and cell division.
argS protein networkhttps://string-db.org/network/398580.Dshi_1728SWISSPROT Q5LQI6: Arginyl-tRNA synthetase; TIGRFAM: TIGR00456 arginyl-tRNA synthetase; PFAM: PF03485, PF05746, PF00750; PROSITE: PS00177, PS00178.
Dshi_1729 protein networkhttps://string-db.org/network/398580.Dshi_1729TIGRFAM: TIGR01353 deoxyguanosinetriphosphate triphosphohydrolase, putative, TIGR00277; SWISSPROT P15723: Deoxyguanosinetriphosphate triphosphohydrolase, P63934: Deoxyguanosinetriphosphate tripho [...]
Dshi_1730 protein networkhttps://string-db.org/network/398580.Dshi_1730TIGRFAM: TIGR00049 Iron-sulfur cluster assembly accessory protein; PROSITE: PS01152; PFAM: PF01521; Belongs to the HesB/IscA family.
Dshi_1731 protein networkhttps://string-db.org/network/398580.Dshi_1731Conserved hypothetical protein.
hemK protein networkhttps://string-db.org/network/398580.Dshi_1732Putative protein methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs t [...]
prfA protein networkhttps://string-db.org/network/398580.Dshi_1733Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
Dshi_1734 protein networkhttps://string-db.org/network/398580.Dshi_1734Conserved hypothetical protein.
speB protein networkhttps://string-db.org/network/398580.Dshi_1735Agmatinase; SWISSPROT P60651: Agmatinase; TIGRFAM: TIGR01230 agmatinase, putative; COG: COG0010 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; PFAM PF0049: Arginase family; [...]
Dshi_1736 protein networkhttps://string-db.org/network/398580.Dshi_1736PFAM: PF05164- Cell division protein ZapA.
Dshi_1737 protein networkhttps://string-db.org/network/398580.Dshi_1737Conserved hypothetical protein.
tktA protein networkhttps://string-db.org/network/398580.Dshi_1738Transketolase 1; SWISSPROT P27302: Transketolase 1; TIGRFAM: TIGR00232 transketolase, bacterial and yeast; COG: COG0021; PFAM: pfam00456, pfam02779, pfam02780; Belongs to the transketolase family [...]
Dshi_1739 protein networkhttps://string-db.org/network/398580.Dshi_1739Hypothetical protein; PFAM: PF05661; COG: COG2354.
gap2 protein networkhttps://string-db.org/network/398580.Dshi_1740SWISSPROT P00362: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: TIGR01534 glyceraldehyde-3-phosphate dehydrogenase, type I; COG: COG0057 - Glyceraldehyde-3-phosphate dehydrogenase/erythrose- [...]
Dshi_1741 protein networkhttps://string-db.org/network/398580.Dshi_1741Hypothetical protein.
gap1 protein networkhttps://string-db.org/network/398580.Dshi_1742SWISSPROT P00362: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: TIGR01534 glyceraldehyde-3-phosphate dehydrogenase, type I; COG: COG0057 - Glyceraldehyde-3-phosphate dehydrogenase/erythrose- [...]
Dshi_1743 protein networkhttps://string-db.org/network/398580.Dshi_1743Hypothetical protein; PFAM: PF00583; PROSITE: PS51186; related to acetyltransferase, GNAT family.
coaD protein networkhttps://string-db.org/network/398580.Dshi_1744Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD [...]
Dshi_1745 protein networkhttps://string-db.org/network/398580.Dshi_1745Hypothetical protein; PFAM: PF00571; SMART: SM00116; COG: COG2905 - Predicted signal-transduction protein containing cAMP-binding and CBS domains; related to cystathionine beta synthase.
Dshi_1746 protein networkhttps://string-db.org/network/398580.Dshi_1746COG: COG0583 - Transcriptional regulator; PFAM: PF00126, PF03466; PROSITE: PS50931; SUPERFAMILY: SSF53850, SSF46785; Belongs to the LysR transcriptional regulatory family.
mmsA protein networkhttps://string-db.org/network/398580.Dshi_1747SWISSPROT P28810: Methylmalonate-semialdehyde dehydrogenase [acylating]; TIGRFAM: TIGR01722 methylmalonic acid semialdehyde dehydrogenase; PANTHER: PTHR11699:SF27; PFAM: PF00171; PROSITE: PS00070 [...]
Dshi_1748 protein networkhttps://string-db.org/network/398580.Dshi_1748Hypothetical protein.
Dshi_1749 protein networkhttps://string-db.org/network/398580.Dshi_1749Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
Dshi_1750 protein networkhttps://string-db.org/network/398580.Dshi_1750acyl-CoA dehydrogenase; PFAM: PF00441, PF02770, PF02771; PROSITE: PS00072, PS00073; COG: COG1960 - Acyl-CoA dehydrogenases.
Dshi_1751 protein networkhttps://string-db.org/network/398580.Dshi_1751enoyl-CoA hydratase/isomerase family protein; COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; Gene3D: G3DSA:3.90.226.10.
mmsB protein networkhttps://string-db.org/network/398580.Dshi_1752TIGRFAM: TIGR01692 3-hydroxyisobutyrate dehydrogenase; PANTHER: PTHR22981; PROSITE: PS00895; PFAM: PF03446; Gene3D: G3DSA:1.10.1040.10; Belongs to the HIBADH-related family.
Dshi_1753 protein networkhttps://string-db.org/network/398580.Dshi_1753COG: COG1024 - Enoyl-CoA hydratase/carnithine racemase; PFAM: PF00378; PROSITE: PS00166; Belongs to the enoyl-CoA hydratase/isomerase family.
Dshi_1754 protein networkhttps://string-db.org/network/398580.Dshi_1754Hypothetical protein.
Dshi_1755 protein networkhttps://string-db.org/network/398580.Dshi_1755SWISSPROT Q9WZW0: tRNA pseudouridine synthase B; PRODOM: PD012454; similar to tRNA pseudouridine synthase B.
Dshi_1756 protein networkhttps://string-db.org/network/398580.Dshi_1756SWISSPROT Q9K197: Carboxylesterase bioH, Q56841: 2-(S)-hydroxypropyl-CoM dehydrogenase.
Dshi_1757 protein networkhttps://string-db.org/network/398580.Dshi_1757Hypothetical protein; COG: COG3926 - Putative secretion activating protein; PFAM: PF05838.
ccmE protein networkhttps://string-db.org/network/398580.Dshi_1758Cytochrome c-type biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a pro [...]
argC protein networkhttps://string-db.org/network/398580.Dshi_1759N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydroge [...]
murI protein networkhttps://string-db.org/network/398580.Dshi_1760Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
Dshi_1761 protein networkhttps://string-db.org/network/398580.Dshi_1761COG: COG3176-Putative hemolysin; PFAM: PF01553; SMART: SM00563; SUPERFAMILY: SSF69593.
Dshi_1762 protein networkhttps://string-db.org/network/398580.Dshi_1762Putative indolepyruvate oxidoreductase; PFAM: PF01558; SUPERFAMILY: SSF52922, SSF52518, SSF53323; PROSITE: PS00639; SWISSPROT O07835: Indolepyruvate oxidoreductase subunit iorA; COG: COG4231 - In [...]
Dshi_1763 protein networkhttps://string-db.org/network/398580.Dshi_1763SWISSPROT P30846: Uncharacterized HTH-type transcriptional regulator yafC; COG: COG0583 - Transcriptional regulator; PFAM: PF00126, PF03466; PROSITE: PS50931; SUPERFAMILY: SSF53850, SSF46785; Bel [...]
Dshi_1764 protein networkhttps://string-db.org/network/398580.Dshi_1764Putative hydrolase; SUPERFAMILY: SSF53474; PANTHER: PTHR11731; Gene3D: G3DSA:3.40.50.1820; COG: COG0657 - Esterase/lipase.
Dshi_1765 protein networkhttps://string-db.org/network/398580.Dshi_1765SWISSPROT Q99T13: Putative multidrug export ATP-binding/permease protein SAV1866; PROSITE: PS00211, PS50893, PS50929; PFAM: PF00664, PF00005; SMART: SM00382.
Dshi_1766 protein networkhttps://string-db.org/network/398580.Dshi_1766Hypothetical protein; PFAM: PF01476.
Dshi_1767 protein networkhttps://string-db.org/network/398580.Dshi_1767Putative lysine carboxylase; PFAM: PF03641; TIGRFAM: TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1, TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2; SU [...]
eda protein networkhttps://string-db.org/network/398580.Dshi_1768SWISSPROT P0A955: KHG/KDPG aldolase; PFAM: PF01081; TIGRFAM: TIGR01182; COG: COG0800 - 2-keto-3-deoxy-6-phosphogluconate aldolase.
edd protein networkhttps://string-db.org/network/398580.Dshi_1769Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
Dshi_1770 protein networkhttps://string-db.org/network/398580.Dshi_1770Hypothetical protein.
Dshi_1771 protein networkhttps://string-db.org/network/398580.Dshi_1771Conserved hypothetical protein; COG: COG1092 - Predicted SAM-dependent methyltransferases; PFAM: PF03602; SUPERFAMILY: SSF53335; SWISSPROT P75876: UPF0064 protein yccW; similar to methyltransfera [...]
Dshi_1772 protein networkhttps://string-db.org/network/398580.Dshi_1772Conserved hypothetical protein.
Dshi_1773 protein networkhttps://string-db.org/network/398580.Dshi_1773Putative metalloprotease; SWISSPROT P25894: Uncharacterized metalloprotease yggG; PANTHER: OMA1 HOMOLOG, ZINC METALLOPEPTIDASE (PTHR22726); PFAM: PF01435.
Dshi_1774 protein networkhttps://string-db.org/network/398580.Dshi_1774Conserved hypothetical protein.
Dshi_1775 protein networkhttps://string-db.org/network/398580.Dshi_1775Putative glutamate--ammonia ligase adenyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are [...]
lon protein networkhttps://string-db.org/network/398580.Dshi_1777ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for [...]
Dshi_1778 protein networkhttps://string-db.org/network/398580.Dshi_1778Hypothetical protein.
ilvI protein networkhttps://string-db.org/network/398580.Dshi_1779SWISSPROT P00893: Acetolactate synthase isozyme 3 large subunit; TIGRFAM: TIGR00118 acetolactate synthase, large subunit, biosynthetic type; COG: COG0028 - Thiamine pyrophosphate-requiring enzyme [...]
Dshi_1780 protein networkhttps://string-db.org/network/398580.Dshi_1780Hypothetical protein; PROSITE: PS51257.
ilvH protein networkhttps://string-db.org/network/398580.Dshi_1781SWISSPROT P00894: Acetolactate synthase isozyme 3 small subunit; TIGRFAM: TIGR00119 acetolactate synthase, small subunit; PFAM: PF01842.
Dshi_1782 protein networkhttps://string-db.org/network/398580.Dshi_1782SWISSPROT P0ABR7: Putative dioxygenase subunit alpha yeaW; PFAM: PF00355; SPRINT: PR00090.
Dshi_1783 protein networkhttps://string-db.org/network/398580.Dshi_1783Conserved hypothetical protein; PROSITE: PS00018.
Dshi_1784 protein networkhttps://string-db.org/network/398580.Dshi_1784TIGRFAM: TIGR02937 RNA polymerase sigma factor, sigma-70 family; COG: COG1595 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PFAM: PF08281, PF04542; Belongs to the sigm [...]
nrdJ protein networkhttps://string-db.org/network/398580.Dshi_1785Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair [...]
Dshi_1787 protein networkhttps://string-db.org/network/398580.Dshi_1787COG: COG1430 - Uncharacterized conserved protein; PFAM: PF02643.
Dshi_1788 protein networkhttps://string-db.org/network/398580.Dshi_1788SWISSPROT P32081: Cold shock protein cspB; COG: COG1278 - Cold shock proteins; PFAM: PF00313; SMART: SM00357; SPRINT: PR00050.
pdxH protein networkhttps://string-db.org/network/398580.Dshi_1789Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
fabI2 protein networkhttps://string-db.org/network/398580.Dshi_1790SWISSPROT O24990: Enoyl-[acyl-carrier-protein] reductase [NADH]; COG: COG0623 - Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: PF00106; SPRINT: PR00081.
Dshi_1791 protein networkhttps://string-db.org/network/398580.Dshi_1791PFAM: PF01810-LysE type translocator; COG: COG1280 - Putative threonine efflux protein; SWISSPROT P0AG38: Threonine efflux protein (rhtC).
Dshi_1792 protein networkhttps://string-db.org/network/398580.Dshi_1792PFAM: PF01810-LysE type translocator; COG: COG1280 - Putative threonine efflux protein; SWISSPROT P0AG38: Threonine efflux protein (rhtC).
gpt protein networkhttps://string-db.org/network/398580.Dshi_1793Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
Dshi_1794 protein networkhttps://string-db.org/network/398580.Dshi_1794Aminotransferase; COG: COG0436 - Aspartate/tyrosine/aromatic aminotransferase; PFAM: PF00155; SPRINT: PR00753; Gene3D: G3DSA:3.40.640.10; SUPERFAMILY: SSF53383.
Dshi_1795 protein networkhttps://string-db.org/network/398580.Dshi_1795SWISSPROT P0ADY1: Peptidyl-prolyl cis-trans isomerase D; SUPERFAMILY: SSF54534, SSF81827.
trpE protein networkhttps://string-db.org/network/398580.Dshi_1796Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first [...]
Dshi_1797 protein networkhttps://string-db.org/network/398580.Dshi_1797Hypothetical protein; PFAM: PF04748.
trpG protein networkhttps://string-db.org/network/398580.Dshi_1798SWISSPROT P00901: Anthranilate synthase component II; TIGRFAM: TIGR00566 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; COG: COG0512 - Anthranilate/para-amino [...]
trpD protein networkhttps://string-db.org/network/398580.Dshi_1799Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranila [...]
trpC protein networkhttps://string-db.org/network/398580.Dshi_1800PFAM: PF00218- Indole-3-glycerol phosphate synthase; SWISSPROT P00909; PROSITE: PS00614; COG: COG0134; Belongs to the TrpC family.
moaC protein networkhttps://string-db.org/network/398580.Dshi_1801Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC fami [...]
moeA1 protein networkhttps://string-db.org/network/398580.Dshi_1802Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
lexA protein networkhttps://string-db.org/network/398580.Dshi_1803lexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causin [...]
Dshi_1804 protein networkhttps://string-db.org/network/398580.Dshi_1804Putative competence protein; PFAM: PF03772; TIGRFAM: TIGR00360.
gltX2 protein networkhttps://string-db.org/network/398580.Dshi_1805glutamyl-tRNA synthase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of [...]
gltA2 protein networkhttps://string-db.org/network/398580.Dshi_1806SWISSPROT P0ABH7: Citrate synthase; TIGR01798 citrate synthase I (hexameric type); COG: COG0372; PFAM: PF00285; PROSITE: PS00480; PRINTS: PR00143; Belongs to the citrate synthase family.
Dshi_1807 protein networkhttps://string-db.org/network/398580.Dshi_1807Putative universal stress protein; PFAM: PF00582; PRINTS: PR01438.
Dshi_1808 protein networkhttps://string-db.org/network/398580.Dshi_1808PFAM PF01235: Sodium:alanine symporter family; TIGRFAM: TIGR00835 amino acid carrier protein; COG: COG1115 - Na+/alanine symporter; PRINTS: PR00175.
uvrA protein networkhttps://string-db.org/network/398580.Dshi_1809UvrABC system protein A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 [...]
Dshi_1810 protein networkhttps://string-db.org/network/398580.Dshi_1810PFAM PF07690: Major facilitator superfamily; PROSITE: PS50850.
lpdV protein networkhttps://string-db.org/network/398580.Dshi_1811SWISSPROT Q9I1L9: Dihydrolipoyl dehydrogenase; TIGRFAM: TIGR01350; PFAM: PF00070, PF02852, PF07992.
Dshi_1812 protein networkhttps://string-db.org/network/398580.Dshi_1812Hypothetical protein; PFAM: PF06041.
Dshi_1813 protein networkhttps://string-db.org/network/398580.Dshi_1813PFAM PF07690: Major facilitator superfamily; PROSITE: PS50850.
Dshi_1814 protein networkhttps://string-db.org/network/398580.Dshi_1814Hypothetical protein; PROSITE: PS00018.
Dshi_1815 protein networkhttps://string-db.org/network/398580.Dshi_1815Putative transcriptional regulator; PFAM: PF00196, PF03472; SMART: SM00421; PROSITE: PS50043; COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domai [...]
Dshi_1816 protein networkhttps://string-db.org/network/398580.Dshi_1816mscS family protein; COG3264 - Small-conductance mechanosensitive channel; PFAM: PF00924; SUPERFAMILY: SSF50182, SSF82861, SSF82689.
Dshi_1817 protein networkhttps://string-db.org/network/398580.Dshi_1817COG1741 - Pirin-related protein; PFAM: PF05726, PF02678; Belongs to the pirin family.
Dshi_1818 protein networkhttps://string-db.org/network/398580.Dshi_1818Hypothetical protein.
Dshi_1819 protein networkhttps://string-db.org/network/398580.Dshi_1819Putative transcriptional regulator; PFAM: PF00196, PF03472; SMART: SM00421; PROSITE: PS50043; COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domai [...]
Dshi_1820 protein networkhttps://string-db.org/network/398580.Dshi_1820Putative mannosyl-3-phosphoglycerate phosphatase; TIGRFAM: TIGR01484 HAD-superfamily hydrolase, subfamily IIB, TIGR01486 mannosyl-3-phosphoglycerate phosphatase family; COG: COG3769 - Predicted h [...]
Dshi_1821 protein networkhttps://string-db.org/network/398580.Dshi_1821Conserved hypothetical protein.
Dshi_1822 protein networkhttps://string-db.org/network/398580.Dshi_1822TIGRFAM: TIGR00832 arsenical-resistance protein; COG: COG0798 - Arsenite efflux pump ACR3 and related permeases; PFAM: PF01758.
Dshi_1823 protein networkhttps://string-db.org/network/398580.Dshi_1823Hypothetical protein.
Dshi_1824 protein networkhttps://string-db.org/network/398580.Dshi_1824SWISSPROT P76041: Putative sucrose phosphorylase, P10249: Sucrose phosphorylase; COG: COG0366 - Glycosidases; PFAM: PF00128.
pta1 protein networkhttps://string-db.org/network/398580.Dshi_1825SWISSPROT P39646: Posphate acetyltransferase; TIGRFAM: TIGR00651; COG: COG0280; PFAM: PF01515-Phosphate acetyl/butaryl transferase.
Dshi_1826 protein networkhttps://string-db.org/network/398580.Dshi_1826Hypothetical protein; PFAM: PF05899, SUPERFAMILY: SSF51182.
Dshi_1827 protein networkhttps://string-db.org/network/398580.Dshi_1827SWISSPROT Q92UW5: UPF0324 membrane protein; PFAM: PF03601- conserved hypothetical protein 698; TIGRFAM: TIGR00698 conserved hypothetical integral membrane protein; COG: COG2855 - Predicted membra [...]
xcs protein networkhttps://string-db.org/network/398580.Dshi_1828SWISSPROT Q84H44: Sulfoacetaldehyde acetyltransferase; PFAM: pfam02776, pfam00205, pfam02775; COG: COG0028 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenas [...]
Dshi_1829 protein networkhttps://string-db.org/network/398580.Dshi_1829Putative FAD-dependent oxidoreductase; PFAM: PF01266; COG: COG0665 - Glycine/D-amino acid oxidases (deaminating).
Dshi_1830 protein networkhttps://string-db.org/network/398580.Dshi_1830Conserved hypothetical protein; PFAM: PF07366.
Dshi_1831 protein networkhttps://string-db.org/network/398580.Dshi_1831PFAM: PF00582; PRINTS: PR01438; COG: COG0589 - Universal stress protein UspA and related nucleotide-binding proteins.
siaT protein networkhttps://string-db.org/network/398580.Dshi_1832SWISSPROT P44543: Sialic acid TRAP transporter permease protein siaT; TIGRFAM: TIGR00786 TRAP transporter, DctM subunit; COG: COG1593 - TRAP-type C4-dicarboxylate transport system, large permease [...]
Dshi_1833 protein networkhttps://string-db.org/network/398580.Dshi_1833Putative TRAP transporter; PFAM: PF04290; DctQ component.
Dshi_1834 protein networkhttps://string-db.org/network/398580.Dshi_1834SWISSPROT P44542: Sialic acid-binding periplasmic protein siaP; TIGRFAM: TIGR00787 tripartite ATP-independent periplasmic transporter solute receptor, DctP family; COG: COG1638 - TRAP-type C4-dic [...]
Dshi_1835 protein networkhttps://string-db.org/network/398580.Dshi_1835Putative transcriptional regulator; SWISSPROT P77730: Uncharacterized HTH-type transcriptional repressor ydcR; COG: COG1167 - Transcriptional regulators containing a DNA-binding HTH domain and an [...]
Dshi_1836 protein networkhttps://string-db.org/network/398580.Dshi_1836Hypothetical protein; PROSITE: PS50817.
nnrE protein networkhttps://string-db.org/network/398580.Dshi_1837yjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converte [...]
Dshi_1838 protein networkhttps://string-db.org/network/398580.Dshi_1838SWISSPROT P0A9Z1: Nitrogen regulation protein PII-1 (glnB); PROSITE: PS00496; PFAM: PF00543; Belongs to the P(II) protein family.
glnA protein networkhttps://string-db.org/network/398580.Dshi_1839SWISSPROT P0A9C5: Glutamine synthetase; TIGRFAM: TIGR00653 glutamine synthetase, type I; COG: COG0174.
Dshi_1840 protein networkhttps://string-db.org/network/398580.Dshi_1840COG: COG1765-Predicted redox protein, regulator or disulfide bond formation. PFAM: pfam02566; SUPERFAMILY: SSF82784; Gene3D: G3DSA:3.30.300.20. No sequence similiarity to protein OsmC from E.coli [...]
Dshi_1841 protein networkhttps://string-db.org/network/398580.Dshi_1841Conserved hypothetical protein.
purB protein networkhttps://string-db.org/network/398580.Dshi_1842SWISSPROT P12047: Adenylosuccinate lyase; TIGRFAM: TIGR00928; COG: COG0015; PFAM: PF00206; PROSITE: PS00163; PRINTS: PR00149, PR00145; Belongs to the lyase 1 family. Adenylosuccinate lyase subfam [...]
Dshi_1843 protein networkhttps://string-db.org/network/398580.Dshi_1843Hypothetical protein.
Dshi_1844 protein networkhttps://string-db.org/network/398580.Dshi_1844Hypothetical protein; PFAM: pfam00515; PROSITE: PS50005, PS50293; related to tetratricopeptide-like.
Dshi_1845 protein networkhttps://string-db.org/network/398580.Dshi_1845SWISSPROT P0ABZ1: Flagellar motor switch protein fliG; COG: COG1536 - Flagellar motor switch protein; PFAM: PF01706; PRINTS: PR00954.
Dshi_1846 protein networkhttps://string-db.org/network/398580.Dshi_1846Conserved hypothetical protein; SUPERFAMILY: SSF75169.
Dshi_1847 protein networkhttps://string-db.org/network/398580.Dshi_1847Hypothetical protein; PFAM: PF02211; SUPERFAMILY: SSF50090; similar to nitrile hydratase subunit beta.
Dshi_1848 protein networkhttps://string-db.org/network/398580.Dshi_1848Hypothetical protein; PFAM: PF02211; SUPERFAMILY: SSF50090; similar to nitrile hydratase subunit beta.
nthA protein networkhttps://string-db.org/network/398580.Dshi_1849Nitrile hydratse subunit alpha; SWISSPROT Q7SID2: Cobalt-containing nitrile hydratase subunit alpha, P97051: Nitrile hydratase subunit alpha; PFAM: PF02979; PIR: PIRSF001426.
Dshi_1850 protein networkhttps://string-db.org/network/398580.Dshi_1850PFAM PF06764: Protein of unknown function DUF1223.
acnA protein networkhttps://string-db.org/network/398580.Dshi_1851Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
Dshi_1852 protein networkhttps://string-db.org/network/398580.Dshi_1852Putative thioredoxin; SWISSPROT P0AA86: Thiol:disulfide interchange protein dsbE; TIGRFAM: TIGR00385 periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; COG: COG0526 - Thiol-disu [...]
ccmC protein networkhttps://string-db.org/network/398580.Dshi_1853Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
ccmB protein networkhttps://string-db.org/network/398580.Dshi_1854Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
ccmA protein networkhttps://string-db.org/network/398580.Dshi_1855Cytochrome c biogenesis ATP-binding export protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be t [...]
Dshi_1856 protein networkhttps://string-db.org/network/398580.Dshi_1856PFAM: Protein of unknown function (DUF498/DUF598); COG: COG3737.
Dshi_1857 protein networkhttps://string-db.org/network/398580.Dshi_1857Hypothetical protein; PFAM: PF01925; PROSITE: PS00318; related to DUF81.
secF protein networkhttps://string-db.org/network/398580.Dshi_1858Protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein [...]
secD protein networkhttps://string-db.org/network/398580.Dshi_1859Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete pr [...]
yajC protein networkhttps://string-db.org/network/398580.Dshi_1860Preprotein translocase subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes [...]
Dshi_1861 protein networkhttps://string-db.org/network/398580.Dshi_1861Hypothetical protein.
Dshi_1862 protein networkhttps://string-db.org/network/398580.Dshi_1862Hypothetical protein; PFAM: PF00805; COG: COG1357 - Uncharacterized low-complexity proteins.
serS protein networkhttps://string-db.org/network/398580.Dshi_1863seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further [...]
Dshi_1864 protein networkhttps://string-db.org/network/398580.Dshi_1864TIGRFAM: TIGR02283 lytic murein transglycosylase; COG: COG2951 - Membrane-bound lytic murein transglycosylase B; PFAM: PF01471; Gene3D: G3DSA:1.10.101.10.
Dshi_1865 protein networkhttps://string-db.org/network/398580.Dshi_1865Hypothetical protein.
Dshi_1866 protein networkhttps://string-db.org/network/398580.Dshi_1866Conserved hypothetical protein; COG: COG5473 - Predicted integral membrane protein.
glnT protein networkhttps://string-db.org/network/398580.Dshi_1867SWISSPROT P31592: Glutamine synthetase 3; COG: COG0174 - Glutamine synthetase; PFAM: PF00120; PROSITE: PS00181; SUPERFAMILY: SSF54368.
Dshi_1868 protein networkhttps://string-db.org/network/398580.Dshi_1868SWISSPROT O87392: Glutamate synthase large subunit-like protein (glxD); PFAM: PF01645; COG: COG0069 - Glutamate synthase domain 2; Belongs to the glutamate synthase family.
Dshi_1869 protein networkhttps://string-db.org/network/398580.Dshi_1869Putative glutamate synthase; PFAM: PF01493; PIR: PIRSF006519; SWISSPROT O87391: Protein glxC; COG: COG0070 - Glutamate synthase domain 3; fwdC/fmdC family protein.
Dshi_1870 protein networkhttps://string-db.org/network/398580.Dshi_1870Putative glutamine amidotransferase; PFAM: PF00310; PROSITE: PS01039; SWISSPROT O87390: Glutamine amidotransferase-like protein glxB; COG: COG0067 - Glutamate synthase domain 1; class II.
Dshi_1871 protein networkhttps://string-db.org/network/398580.Dshi_1871Putative HTH-type transcriptional regulator; PFAM: PF01381, PF07883; PROSITE: PS50943; SUPERFAMILY: SSF51182, SSF47413; COG: COG1396 - Predicted transcriptional regulators.
Dshi_1872 protein networkhttps://string-db.org/network/398580.Dshi_1872Putative soluble aldose sugar dehydrogenase; SUPERFAMILY: SSF50952; Gene3D: G3DSA:2.120.10.30; COG: COG2133 - Glucose/sorbosone dehydrogenases.
Dshi_1873 protein networkhttps://string-db.org/network/398580.Dshi_1873SWISSPROT P00105: Cytochrome c-554(548); PFAM: PF00034- cytochrome c; COG: COG2863 - Cytochrome c553.
Dshi_1874 protein networkhttps://string-db.org/network/398580.Dshi_1874Putative regulatory protein; PFAM: PF00440; PROSITE: PS50977; SUPERFAMILY: SSF46689, SSF48498; COG: COG1309 - Transcriptional regulator; tetR family.
Dshi_1875 protein networkhttps://string-db.org/network/398580.Dshi_1875Putative inner membrane protein; PFAM: PF04224-Protein of unknown function, DUF417; COG: Predicted membrane protein; SWISSPROT P75685: Inner membrane protein ykgB; DUF417.
Dshi_1876 protein networkhttps://string-db.org/network/398580.Dshi_1876Putative glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
Dshi_1877 protein networkhttps://string-db.org/network/398580.Dshi_1877Conserved hypothetical protein; COG: COG4325 - Predicted membrane protein.
Dshi_1878 protein networkhttps://string-db.org/network/398580.Dshi_1878Hypothetical protein; SUPERFAMILY: SSF56784.
Dshi_1879 protein networkhttps://string-db.org/network/398580.Dshi_1879COG: COG3825 - Uncharacterized protein conserved in bacteria.
Dshi_1880 protein networkhttps://string-db.org/network/398580.Dshi_1880Conserved hypothetical protein.
Dshi_1881 protein networkhttps://string-db.org/network/398580.Dshi_1881Conserved hypothetical protein; PROSITE: PS00214, PS51257.
Dshi_1882 protein networkhttps://string-db.org/network/398580.Dshi_1882Putative acetyltransferase; PFAM: PF00583; PROSITE: PS51186; SUPERFAMILY: SSF55729.
Dshi_1883 protein networkhttps://string-db.org/network/398580.Dshi_1883Putative clpA/clpB family protein; COG: COG0714 - MoxR-like ATPases; PFAM: PF00004; SMART: SM00382; PRITNTS: PR00300.
dksA protein networkhttps://string-db.org/network/398580.Dshi_1884Putative DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of s [...]
Dshi_1885 protein networkhttps://string-db.org/network/398580.Dshi_1885Putative salicylate hydroxylase; COG: COG0654 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases; PFAM: PF01266; PRINTS: PR00420.
Dshi_1886 protein networkhttps://string-db.org/network/398580.Dshi_1886TIGRFAM: TIGR00195 exodeoxyribonuclease III, TIGR00633 exodeoxyribonuclease III (xth); COG: COG0708 - Exonuclease III; PFAM: PF03372-Endonuclease/Exonuclease/phosphatase family; PROSITE: PS00726; [...]
rnd protein networkhttps://string-db.org/network/398580.Dshi_1887Putative ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs [...]
purN protein networkhttps://string-db.org/network/398580.Dshi_1888Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylg [...]
purM protein networkhttps://string-db.org/network/398580.Dshi_1889Phosphoribosylformylglycinamidine cyclo ligase; TIGRFAM: TIGR00878 phosphoribosylaminoimidazole synthetase; COG: COG0150 - Phosphoribosylaminoimidazole (AIR) synthetase.
Dshi_1890 protein networkhttps://string-db.org/network/398580.Dshi_1890Hypothetical protein; PFAM: PF08238; SMART: SM00671; SUPERFAMILY: SSF81901.
Dshi_1891 protein networkhttps://string-db.org/network/398580.Dshi_1891Putative flavohemoglobin / bacterial hemoglobin; COG: COG1017 - Hemoglobin-like flavoprotein; PFAM: PF00042-Globin; SUPERFAMILY: Globin-like SSF46458; Gene3D: G3DSA:1.10.490.10; SWISSPROT P04252: [...]
Dshi_1892 protein networkhttps://string-db.org/network/398580.Dshi_1892COG: COG3287 - Uncharacterized conserved protein; PFAM: PF08495.
Dshi_1893 protein networkhttps://string-db.org/network/398580.Dshi_1893LOV-regulator, Blue-light sensing; Similar to to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); highly conserved LOV consensus region including the photoactive Cys. TIGRFAM: TIGR002 [...]
Dshi_1894 protein networkhttps://string-db.org/network/398580.Dshi_1894COG: COG2197 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: PF00196, PF00072; PROSITE: PS50043, PS50110; SMART: SM00448; SUPERFAMILY: SSF52172.
Dshi_1895 protein networkhttps://string-db.org/network/398580.Dshi_1895Hypothetical protein; PFAM: PF00353.
algD protein networkhttps://string-db.org/network/398580.Dshi_1896SWISSPROT P11759: GDP-mannose 6-dehydrogenase; COG: COG1004 - Predicted UDP-glucose 6-dehydrogenase; PROSITE: PS00059; PFAM: PF03721, PF00984, PF03720.
algA protein networkhttps://string-db.org/network/398580.Dshi_1897SWISSPROT P07874: Alginate biosynthesis protein algA; TIGRFAM: TIGR01479 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; COG: COG0836 - Mannose-1-phosphate guanylyltransfer [...]
Dshi_1898 protein networkhttps://string-db.org/network/398580.Dshi_1898SWISSPROT Q52463: Glycosyltransferase alg8. Possibly a processive enzyme that polymerizes GDP-mannuronic acid. No evidence at protein level but the colocation with algA and algG indicates an invo [...]
Dshi_1899 protein networkhttps://string-db.org/network/398580.Dshi_1899Hypothetical protein; SWISSPROT P46682: p-hydroxybenzoic acid efflux pump subunit aaeA; related to efflux pump protein.
algC protein networkhttps://string-db.org/network/398580.Dshi_1900SWISSPROT P26276: Phosphomannomutase/phosphoglucomutase; COG: COG1109 - Phosphomannomutase; PFAM: PF02880, PF02879, PF02878, PF00408; PROSITE: PS00710.
Dshi_1901 protein networkhttps://string-db.org/network/398580.Dshi_1901Hypothetical protein; SWISSPROT Q887Q8: alginate biosynthesis protein algF (precursor). No evidence at protein level and low similarity but the colocation with algC, algA and algD indicates an in [...]
Dshi_1902 protein networkhttps://string-db.org/network/398580.Dshi_1902Putative poly(beta-D-mannuronate) O-acetylase; COG: COG1696 - Predicted membrane protein involved in D-alanine export; PFAM: PF03062; Belongs to the membrane-bound acyltransferase family.
Dshi_1903 protein networkhttps://string-db.org/network/398580.Dshi_1903Putative alginate biosynthesis protein algJ; SWISSPROT Q51393.
Dshi_1904 protein networkhttps://string-db.org/network/398580.Dshi_1904Hypothetical protein; SWISSPROT Q88NDO; similar to alginate biosynthesis protein algX.
Dshi_1905 protein networkhttps://string-db.org/network/398580.Dshi_1905Hypothetical protein; PFAM: PF00589; Gene3D: G3DSA:1.10.443.10; similar to prophage integrase; Belongs to the 'phage' integrase family.
Dshi_1906 protein networkhttps://string-db.org/network/398580.Dshi_1906Hypothetical protein; SUPERFAMILY: SSF46955; PFAM: PF00376.
Dshi_1907 protein networkhttps://string-db.org/network/398580.Dshi_1907Hypothetical protein; PROSITE: PS00039.
Dshi_1908 protein networkhttps://string-db.org/network/398580.Dshi_1908Hypothetical protein.
Dshi_1909 protein networkhttps://string-db.org/network/398580.Dshi_1909Hypothetical protein.
Dshi_1910 protein networkhttps://string-db.org/network/398580.Dshi_1910Hypothetical protein.
Dshi_1911 protein networkhttps://string-db.org/network/398580.Dshi_1911PS00527: Ribosomal protein S14 signature; similar to ribosomal protein.
Dshi_1912 protein networkhttps://string-db.org/network/398580.Dshi_1912Hypothetical protein.
Dshi_1913 protein networkhttps://string-db.org/network/398580.Dshi_1913Putative insertion element; PFAM: PF00665; PROSITE: PS50994; SUPERFAMILY: SSF53098; COG: COG2801 - Transposase and inactivated derivatives.
Dshi_1914 protein networkhttps://string-db.org/network/398580.Dshi_1914Putative insertion element / transposase; PFAM: PF01527-Transposase.
Dshi_1915 protein networkhttps://string-db.org/network/398580.Dshi_1915Hypothetical protein.
Dshi_1916 protein networkhttps://string-db.org/network/398580.Dshi_1916Hypothetical protein.
Dshi_1917 protein networkhttps://string-db.org/network/398580.Dshi_1917Putative modification methylase; PROSITE: PS00093; PFAM: PF01555.
Dshi_1918 protein networkhttps://string-db.org/network/398580.Dshi_1918Putative modification methylase; PROSITE: PS00093; PFAM: PF01555.
Dshi_1919 protein networkhttps://string-db.org/network/398580.Dshi_1919Hypothetical protein.
Dshi_1920 protein networkhttps://string-db.org/network/398580.Dshi_1920Hypothetical protein; PFAM: PF00753.
Dshi_1921 protein networkhttps://string-db.org/network/398580.Dshi_1921Histidine kinase; COG: COG0642 - Signal transduction histidine kinase; PFAM: PF02518, PF00672, PF00512.
Dshi_1922 protein networkhttps://string-db.org/network/398580.Dshi_1922Hypothetical protein.
Dshi_1923 protein networkhttps://string-db.org/network/398580.Dshi_1923Conserved hypothetical protein.
Dshi_1924 protein networkhttps://string-db.org/network/398580.Dshi_1924TIGRFAM: TIGR02122 TRAP transporter solute receptor, TAXI family; COG: COG2358 - TRAP-type uncharacterized transport system, periplasmic component; Gene3D: G3DSA:3.40.190.10; SUPERFAMIYLY: SSF538 [...]
Dshi_1925 protein networkhttps://string-db.org/network/398580.Dshi_1925Putative ATPase; COG: COG3267 - Type II secretory pathway, component ExeA (predicted ATPase); SMART: SM00382; SUPERFAMILY: SSF52540.
priA protein networkhttps://string-db.org/network/398580.Dshi_1926Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its h [...]
tal protein networkhttps://string-db.org/network/398580.Dshi_1927Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
Dshi_1928 protein networkhttps://string-db.org/network/398580.Dshi_1928PFAM: PF04340 - Protein of unknown function, DUF484.
Dshi_1930 protein networkhttps://string-db.org/network/398580.Dshi_1930Putative integral membrane protein DUF6; PFAM: PF00892; SUPERFAMILY: SSF103481.
Dshi_1931 protein networkhttps://string-db.org/network/398580.Dshi_1931Conserved hypothetical protein.
Dshi_1932 protein networkhttps://string-db.org/network/398580.Dshi_1932COG: COG0625 - Glutathione S-transferase; PFAM: PF02798, PF00043; SUPERFAMILY: SSF47616, SSF52833; SWISSPROT Q46845: Uncharacterized GST-like protein yghU.
ileS protein networkhttps://string-db.org/network/398580.Dshi_1933isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such e [...]
Dshi_1934 protein networkhttps://string-db.org/network/398580.Dshi_1934Hypothetical protein.
Dshi_1935 protein networkhttps://string-db.org/network/398580.Dshi_1935COG: COG0492 - Thioredoxin reductase; PFAM: PF00027, PF00070; PROSITE: PS50042; SMART: SM00100; PRINTS: PR00469, PR00419, PR00368.
Dshi_1936 protein networkhttps://string-db.org/network/398580.Dshi_1936TIGRFAM: TIGR01620 conserved hypothetical protein; COG: COG3768 - Predicted membrane protein; PFAM: pfam05128; family DUF697.
Dshi_1937 protein networkhttps://string-db.org/network/398580.Dshi_1937PFAM: PF04317-YcjX-like family, DUF463; SWISSPROT P76046: Uncharacterized protein ycjX; COG: COG3106 - Predicted ATPase; DUF463.
truA protein networkhttps://string-db.org/network/398580.Dshi_1938Pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
Dshi_1939 protein networkhttps://string-db.org/network/398580.Dshi_1939Putative ABC transporter permease protein; COG: COG0600 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; PFAM: PF00528; PROSITE: PS50928.
Dshi_1940 protein networkhttps://string-db.org/network/398580.Dshi_1940ABC transporter ATP binding protein; COG: COG1116 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
Dshi_1941 protein networkhttps://string-db.org/network/398580.Dshi_1941NMT1/THI5 family protein; PFAM: PF09084-NMT1/THI5 like; COG: COG0715 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
Dshi_1942 protein networkhttps://string-db.org/network/398580.Dshi_1942Putative GSCFA family protein; PFAM: PF08885.
codA protein networkhttps://string-db.org/network/398580.Dshi_1943SWISSPROT P25524: Cytosine deaminase; COG: COG0402 - Cytosine deaminase and related metal-dependent hydrolases; PFAM: PF07969-Amidohydrolase family; SUPERFAMILY: SSF51556 Metallo-dependent hydrol [...]
Dshi_1944 protein networkhttps://string-db.org/network/398580.Dshi_1944Putative methyltransferase; SUPERFAMILY: S-adenosyl-L-methionine-dependent methyltransferases; PFAM: PF05711 -Macrocin-O-methyltransferase (TylF).
Dshi_1945 protein networkhttps://string-db.org/network/398580.Dshi_1945Putative permease component of branched-chain amino acid transport system; COG: COG1079 - Uncharacterized ABC-type transport system, permease component; PFAM: PF02653; Belongs to the binding-prot [...]
Dshi_1946 protein networkhttps://string-db.org/network/398580.Dshi_1946COG4603 - ABC-type uncharacterized transport system, permease component; PFAM: PF02653; Belongs to the binding-protein-dependent transport system permease family.
rbsA4 protein networkhttps://string-db.org/network/398580.Dshi_1947SWISSPROT P04983: Ribose import ATP-binding protein rbsA; COG: COG3845 - ABC-type uncharacterized transport systems, ATPase components; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
Dshi_1948 protein networkhttps://string-db.org/network/398580.Dshi_1948Putative basic membrane protein; COG: COG1744 - Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; PFAM: PF02608; PROSITE: PS00024.
Dshi_1949 protein networkhttps://string-db.org/network/398580.Dshi_1949Hypothetical protein.
Dshi_1950 protein networkhttps://string-db.org/network/398580.Dshi_1950Hypothetical protein; SUPERFAMILY: SSF52540; similar to hydrolase.
Dshi_1951 protein networkhttps://string-db.org/network/398580.Dshi_1951Hypothetical protein; PFAM: PF00529; COG: COG1566: Multidrug resistance efflux pump; related to HlyD family secretion proteins.
Dshi_1952 protein networkhttps://string-db.org/network/398580.Dshi_1952Hypothetical protein.
Dshi_1953 protein networkhttps://string-db.org/network/398580.Dshi_1953Putative hydrolase; COG: COG3509 - Poly(3-hydroxybutyrate) depolymerase; Gene3D: G3DSA:3.40.50.1820; SUPERFAMILY: SSF53474.
Dshi_1954 protein networkhttps://string-db.org/network/398580.Dshi_1954Putative short-chain dehydrogenase; PFAM: PF00106-short chain dehydrogenase; PRINTS: PR00081; COG: COG0300 - Short-chain dehydrogenases of various substrate specificities.
Dshi_1955 protein networkhttps://string-db.org/network/398580.Dshi_1955Putative short-chain dehydrogenase; PFAM: PF00106, PF01370; PRINTS: PR00081; Gene3D: G3DSA:3.40.50.720; COG: COG1028 - Dehydrogenases with different specificities (related to short-chain alcohol [...]
Dshi_1956 protein networkhttps://string-db.org/network/398580.Dshi_1956Putative NAD-dependent epimerase/dehydratase; PFAM: PF01370; COG: COG0451 - Nucleoside-diphosphate-sugar epimerases.
Dshi_1957 protein networkhttps://string-db.org/network/398580.Dshi_1957Hypothetical protein; COG: COG3063 - Tfp pilus assembly protein PilF; PFAM: PF00515 Tetratricopeptide repeat 1, PF07719 Tetratricopeptide repeat 2; PROSITE: PS50005-TPR repeat profile, PS50293-TP [...]
Dshi_1958 protein networkhttps://string-db.org/network/398580.Dshi_1958Putative NAD-dependent epimerase/dehydratase; COG: COG0451 - Nucleoside-diphosphate-sugar epimerases; PFAM: PF01370; PROSITE: PS00178, PS00061; Gene3D: G3DSA:3.40.50.720.
Dshi_1960 protein networkhttps://string-db.org/network/398580.Dshi_1960PFAM: PF01663-Type I phosphodiesterase / nucleotide pyrophosphatase; Gene3D: G3DSA:3.40.720.10-Alkaline Phosphatase, subunit A; SUPERFAMILY: Alkaline phosphatase-like.
Dshi_1961 protein networkhttps://string-db.org/network/398580.Dshi_1961Hypothetical protein; PROSITE: PS50075; SUPERFAMILY: ACP-like; similar to acyl carrier protein.
Dshi_1962 protein networkhttps://string-db.org/network/398580.Dshi_1962Putative modular PKS system; SWISSPROT Q03133: Erythronolide synthase, modules 5 and 6; Q03131: Erythronolide synthase, modules 1 and 2; Q03132: Erythronolide synthase, modules 3 and 4; PFAM: PF0 [...]
Dshi_1963 protein networkhttps://string-db.org/network/398580.Dshi_1963Putative modular PKS system; SWISSPROT: Q03131: Erythronolide synthase, modules 1 and 2; Q03132: Erythronolide synthase, modules 3 and 4; PFAM: PF03060, PF08659, PF00109, PF02801, PF00698; TIGRFA [...]
Dshi_1964 protein networkhttps://string-db.org/network/398580.Dshi_1964Hypothetical protein; TIGRFAM: TIGR01681 HAD-superfamily phosphatase, subfamily IIIC; TIGR01686 FkbH-like domain; COG: COG3882 - Predicted enzyme involved in methoxymalonyl-ACP biosynthesis; SUPE [...]
Dshi_1965 protein networkhttps://string-db.org/network/398580.Dshi_1965Conserved hypothetical protein; SUPERFAMILY: SSF52540.
lpdA protein networkhttps://string-db.org/network/398580.Dshi_1966SWISSPROT P0A9P0: Dihydrolipoyl dehydrogenase; PFAM: PF00364, PF00070, PF02852, PF07992; PROSITE: PS50968, PS00189, PS00076; PRINTS: PR00945, PR00411, PR00368; TIGRFAM: TIGR01350 dihydrolipoamide [...]
aceF protein networkhttps://string-db.org/network/398580.Dshi_1967Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
aceE protein networkhttps://string-db.org/network/398580.Dshi_1968Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
Dshi_1970 protein networkhttps://string-db.org/network/398580.Dshi_1970TIGRFAM: TIGR00786 TRAP transporter, DctM subunit; COG: COG4664 - TRAP-type mannitol/chloroaromatic compound transport system, large permease component; PFAM: PF04290, PF06808.
Dshi_1971 protein networkhttps://string-db.org/network/398580.Dshi_1971Putative TRAP-transporter extracellular solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
Dshi_1972 protein networkhttps://string-db.org/network/398580.Dshi_1972SWISSPROT P0ACL9: Pyruvate dehydrogenase complex repressor (pdhR); COG: COG2186 - Transcriptional regulators; PFAM: PF07729, PF00392; SMART: SM00345; PROSITE: PS50949; Gene3D: G3DSA:1.10.10.10; S [...]
Dshi_1973 protein networkhttps://string-db.org/network/398580.Dshi_1973Hypothetical protein; PFAM PF07726: ATPase family associated with various cellular activities (AAA); SMART: SM00382; COG: COG0714 - MoxR-like ATPases; related to ATPase (AAA).
Dshi_1974 protein networkhttps://string-db.org/network/398580.Dshi_1974COG: COG3864 - Uncharacterized protein conserved in bacteria.
Dshi_1975 protein networkhttps://string-db.org/network/398580.Dshi_1975Conserved hypothetical protein.
rbsK protein networkhttps://string-db.org/network/398580.Dshi_1976Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotid [...]
Dshi_1977 protein networkhttps://string-db.org/network/398580.Dshi_1977Periplasmic binding protein; PFAM: PF01094-Receptor family ligand binding region; PROSITE: PS51257; SWISSPROT P21175: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Prec [...]
Dshi_1978 protein networkhttps://string-db.org/network/398580.Dshi_1978PFAM: PF02653-Branched-chain amino acid transport system / permease component; COG: COG4177 - ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-prote [...]
Dshi_1979 protein networkhttps://string-db.org/network/398580.Dshi_1979SWISSPROT P0AEX7: High-affinity branched-chain amino acid transport system permease protein livH; PFAM: PF02653-Branched-chain amino acid transport system / permease component; COG: COG4177 - ABC [...]
Dshi_1980 protein networkhttps://string-db.org/network/398580.Dshi_1980SWISSPROT P22731: High-affinity branched-chain amino acid transport ATP-binding protein livF; PFAM: PF00005; PROSITE: PS50893; SMART: SM00382.
Dshi_1981 protein networkhttps://string-db.org/network/398580.Dshi_1981SWISSPROT Q58663: branched-chain amino acid transport ATP-binding protein livG; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
Dshi_1982 protein networkhttps://string-db.org/network/398580.Dshi_1982Aldo/keto reductase family protein; PFAM: PF00248.
Dshi_1983 protein networkhttps://string-db.org/network/398580.Dshi_1983Conserved hypothetical protein.
Dshi_1984 protein networkhttps://string-db.org/network/398580.Dshi_1984SWISSPROT P76114: Uncharacterized HTH-type transcriptional regulator yncC; PFAM: PF07729, PF00392; Gene3D: G3DSA:1.10.10.10; COG: COG1802 - Transcriptional regulators.
Dshi_1985 protein networkhttps://string-db.org/network/398580.Dshi_1985Aldo/keto reductase family protein; COG: COG0667 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); PFAM: PF00248, PF01042; PRINTS: PR00069; SUPERFAMILY: SSF51430.
icd protein networkhttps://string-db.org/network/398580.Dshi_1986TIGRFAM: TIGR00178 isocitrate dehydrogenase, NADP-dependent, monomeric type; COG: COG2838 - Monomeric isocitrate dehydrogenase; PFAM PF03971: Monomeric isocitrate dehydrogenase.
Dshi_1987 protein networkhttps://string-db.org/network/398580.Dshi_1987Conserved hypothetical protein; Similar to molybdenum import ATP-binding protein modC2.
Dshi_1988 protein networkhttps://string-db.org/network/398580.Dshi_1988Hypothetical protein.
Dshi_1989 protein networkhttps://string-db.org/network/398580.Dshi_1989Hypothetical protein; PFAM: PF00529; COG: COG1566: Multidrug resistance efflux pump; related to HlyD family secretion proteins.
Dshi_1990 protein networkhttps://string-db.org/network/398580.Dshi_1990Protein kinase-like protein; PFAM: PF01636; SUPERFAMILY: SSF56112; COG: COG0510 - Predicted choline kinase involved in LPS biosynthesis.
Dshi_1991 protein networkhttps://string-db.org/network/398580.Dshi_1991Putative multidrug export ATP-binding/permease protein; PROSITE: PS50893, PS50929; PFAM: PF00664, PF00005; SMART: SM00382.
Dshi_1992 protein networkhttps://string-db.org/network/398580.Dshi_1992Hypothetical protein; PFAM: PF00534; related to glycosyl transferase group 1.
Dshi_1993 protein networkhttps://string-db.org/network/398580.Dshi_1993Putative glycosyltransferase; PFAM: PF00534.
Dshi_1994 protein networkhttps://string-db.org/network/398580.Dshi_1994Putative glycosyltransferase; COG: COG4671 - Predicted glycosyl transferase; SUPERFAMILY: SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase; Gene3D: G3DSA:3.40.50.2000.
Dshi_1995 protein networkhttps://string-db.org/network/398580.Dshi_1995Conserved hypothetical protein.
xylA protein networkhttps://string-db.org/network/398580.Dshi_1996Xylose isomerase; PROSITE: PS00172, PS00173; PFAM: PF01261; SWISSPROT Q3IYM4: Xylose isomerase; TIGRFAM: TIGR02630; COG: COG2115; Belongs to the xylose isomerase family.
xylB2 protein networkhttps://string-db.org/network/398580.Dshi_1997SWISSPROT P09099: Xylose kinase; PFAM: PF00370, PF02782; TIGRFAM: TIGR01312 D-xylulose kinase; COG: COG1070 - Sugar (pentulose and hexulose) kinases.
Dshi_1998 protein networkhttps://string-db.org/network/398580.Dshi_1998SWISSPROT P04983: Ribose import ATP-binding protein rbsA; COG: COG1129 - ABC-type sugar transport system, ATPase component, ATPase components; PFAM: PF00005; PROSITE: PS50893; SMART: SM00382.
xylH protein networkhttps://string-db.org/network/398580.Dshi_1999SWISSPROT P0AGI4: Xylose transport system permease protein xylH; COG: COG4214 - ABC-type xylose transport system, permease component; PFAM: PF02653; Belongs to the binding-protein-dependent trans [...]
Dshi_2000 protein networkhttps://string-db.org/network/398580.Dshi_2000SWISSPROT P37387: D-xylose-binding periplasmic protein [Precursor]; TIGRFAM: TIGR02634 D-xylose ABC transporter, substrate-binding protein; COG: COG4213 - ABC-type xylose transport system, peripl [...]
Dshi_2001 protein networkhttps://string-db.org/network/398580.Dshi_2001SWISSPROT Q44406: Xylose repressor xylR. The entry has no evidence at protein level, but the colocation with the xylose operon supports the annotation. COG: COG1940 - Transcriptional regulator/su [...]
Dshi_2002 protein networkhttps://string-db.org/network/398580.Dshi_2002Hypothetical protein; SUPERFAMILY: SSF69318.
Dshi_2003 protein networkhttps://string-db.org/network/398580.Dshi_2003Hypothetical protein; TIGRFAM: TIGR01409.
Dshi_2004 protein networkhttps://string-db.org/network/398580.Dshi_2004Conserved hypothetical protein; PFAM: PF01794.
Dshi_2005 protein networkhttps://string-db.org/network/398580.Dshi_2005Putative cytochrome c peroxidase; PFAM: PF03150; Gene3D: G3DSA:1.10.760.10; PROSITE: PS51007.
Dshi_2006 protein networkhttps://string-db.org/network/398580.Dshi_2006DK; SWISSPROT O34627: Blue-light photoreceptor; PFAM: PF08447; SMART: SM00086, SM00091; PROSITE: PS50112, PS50113. TD; 1) similar to known LOV domains (e.g SB1 and SB2 from Pseudomonas putida); 2 [...]
Dshi_2007 protein networkhttps://string-db.org/network/398580.Dshi_2007Hypothetical protein; PFAM: PF00293; Gene3D: G3DSA:3.90.79.10; SUPERFAMILY: SSF55811; similar to NUDIX hydrolase.
Dshi_2008 protein networkhttps://string-db.org/network/398580.Dshi_2008SWISSPROT P0ACL0: Glycerol-3-phosphate regulon repressor; COG: COG1349 - Transcriptional regulators of sugar metabolism; PFAM: PF08220, PF00455; PROSITE: PS00894, PS51000; SMART: SM00420.
Dshi_2009 protein networkhttps://string-db.org/network/398580.Dshi_2009TIGRFAM: TIGR01098 phosphonates-binding periplasmic protein; COG: COG3221 - ABC-type phosphate/phosphonate transport system, periplasmic component; SUPERFAMILY: SSF53850.
phnC1 protein networkhttps://string-db.org/network/398580.Dshi_2010Phosphonates import ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC tr [...]
Dshi_2011 protein networkhttps://string-db.org/network/398580.Dshi_2011Putative ABC transporter inner membrane component; TIGRFAM: TIGR01097 phosphonate ABC transporter, permease protein; COG: COG3639 - ABC-type phosphate/phosphonate transport system, permease compo [...]
Dshi_2012 protein networkhttps://string-db.org/network/398580.Dshi_2012Putative ABC transporter inner membrane component; TIGRFAM: TIGR01097 phosphonate ABC transporter, permease protein; COG: COG3639 - ABC-type phosphate/phosphonate transport system, permease compo [...]
Dshi_2013 protein networkhttps://string-db.org/network/398580.Dshi_2013Conserved hypothetical protein; PFAM: PF00702; COG: COG0647 - Predicted sugar phosphatases of the HAD superfamily; TIGRFAM: TIGR01459 HAD-superfamily class IIA hydrolase; TIGR01460 Haloacid Dehal [...]
ugpB1 protein networkhttps://string-db.org/network/398580.Dshi_2014SWISSPROT P0AG80: sn-glycerol-3-phosphate-binding periplasmic protein ugpB [Precursor]; COG: COG1653 - ABC-type sugar transport system, periplasmic component; PFAM: PF01547; SUPERFAMILY: SSF53850 [...]
ugpA4 protein networkhttps://string-db.org/network/398580.Dshi_2015SWISSPROT P10905: sn-glycerol-3-phosphate transport system permease protein ugpA; PFAM: PF00528; PROSITE: PS50928; COG1175 - ABC-type sugar transport systems, permease components.
ugpE3 protein networkhttps://string-db.org/network/398580.Dshi_2016Sn-glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the su [...]
ugpC4 protein networkhttps://string-db.org/network/398580.Dshi_2017SWISSPROT P10907: sn-glycerol-3-phosphate import ATP-binding protein ugpC; PFAM: PF00005, PF08402; PROSITE: PS00211, PS50893; SMART: SM00382; Belongs to the ABC transporter superfamily.
Dshi_2018 protein networkhttps://string-db.org/network/398580.Dshi_2018Conserved hypothetical protein.
Dshi_2019 protein networkhttps://string-db.org/network/398580.Dshi_2019Putative glutamate synthase [NADPH] large chain; COG: COG0069 - Glutamate synthase domain 2; PFAM: PF01645; Gene3D: G3DSA:3.20.20.70; Belongs to the glutamate synthase family.
pgm protein networkhttps://string-db.org/network/398580.Dshi_2020SWISSPROT P39671: Phosphoglucomutase; COG: COG0033 - Phosphoglucomutase; PFAM: PF02880, PF02879, PF02878, PF00408.
Dshi_2021 protein networkhttps://string-db.org/network/398580.Dshi_2021SWISSPROT Q9HTX3: Probable binding protein component of ABC iron transporter PA5217 [Precursor]; COG: COG1840 - ABC-type Fe3+ transport system, periplasmic component; PFAM: PF01547; SUPERFAMILY: [...]
Dshi_2022 protein networkhttps://string-db.org/network/398580.Dshi_2022Hypothetical protein; No shine dalgarno sequence, no Swiss-Prot or InterPro Hits, no similar proteins in ncbi database. Probably pseudogene???.
Dshi_2023 protein networkhttps://string-db.org/network/398580.Dshi_2023Putative ABC transporter permease component; PFAM: PF00528-Binding-protein-dependent transport system inner membrane component; COG: COG1178 - ABC-type Fe3+ transport system, permease component; [...]
Dshi_2024 protein networkhttps://string-db.org/network/398580.Dshi_2024Conserved hypothetical protein; PFAM: PF01925.
Dshi_2025 protein networkhttps://string-db.org/network/398580.Dshi_2025PFAM: PF07385-Protein of unknown function (DUF1498); COG: COG3822 - ABC-type sugar transport system, auxiliary component.
Dshi_2026 protein networkhttps://string-db.org/network/398580.Dshi_2026UPF0271 (lamB) family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
Dshi_2027 protein networkhttps://string-db.org/network/398580.Dshi_2027Putative allophanate hydrolase subunit 2; PFAM: PF02626; SMART: SM00797; TIGRFAM: TIGR00724 biotin-dependent carboxylase uncharacterized domain; COG: COG1984 - Allophanate hydrolase subunit 2.
Dshi_2028 protein networkhttps://string-db.org/network/398580.Dshi_2028Putative allophanate hydrolase subunit 1; TIGRFAM: TIGR00370 conserved hypothetical protein TIGR00370; COG: COG2049 - Allophanate hydrolase subunit 1; PFAM: PF02682; SMART: SM00796.
Dshi_2029 protein networkhttps://string-db.org/network/398580.Dshi_2029SWISSPROT P0ACP7: HTH-type transcriptional repressor purR; PFAM: PF00356, PF00532; SMART: SM00354; PROSITE: PS50932; SUPERFAMILY: SSF47413; COG: COG1609 - Transcriptional regulators.
Dshi_2030 protein networkhttps://string-db.org/network/398580.Dshi_2030Hypothetical protein.
Dshi_2031 protein networkhttps://string-db.org/network/398580.Dshi_2031PFAM: PF03480; TIGRFAM: TIGR01409; COG: COG1638 - TRAP-type C4-dicarboxylate transport system, periplasmic component; SWISSPROT P37735: C4-dicarboxylate-binding periplasmic protein [Precursor].
Dshi_2032 protein networkhttps://string-db.org/network/398580.Dshi_2032TRAP transporter permease component; COG: COG3090 - TRAP-type C4-dicarboxylate transport system, small permease component; PFAM: PF04290; PROSITE: PS00430.
Dshi_2033 protein networkhttps://string-db.org/network/398580.Dshi_2033PFAM: PF06808-DctM-like transporters; TIGRFAM: TIGR00786 TRAP transporter, DctM subunit; COG: COG1593 - TRAP-type C4-dicarboxylate transport system, large permease component.
hisD2 protein networkhttps://string-db.org/network/398580.Dshi_2034Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
Dshi_2035 protein networkhttps://string-db.org/network/398580.Dshi_2035Putative gluconate 5-dehydrogenase; COG: COG1028 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PFAM: PF00106; PROSITE: PS00061; PRINTS: PR00080, P [...]
Dshi_2036 protein networkhttps://string-db.org/network/398580.Dshi_2036Zinc-containing alcohol dehydrogenase; PFAM: PF00107, PF08240; SUPERFAMILY: SSF50129; PANTHER: PTHR11695: Alcohol dehydrogenase related.
Dshi_2037 protein networkhttps://string-db.org/network/398580.Dshi_2037Conserved hypothetical protein; SWISSPROT P42604: Altronate hydrolase; similar to altronate hydrolase.
Dshi_2038 protein networkhttps://string-db.org/network/398580.Dshi_2038Putative altronate hydrolase; COG: COG2721 - Altronate dehydratase; PFAM: PF04295.
Dshi_2039 protein networkhttps://string-db.org/network/398580.Dshi_2039COG: COG2055 - Malate/L-lactate dehydrogenases; PFAM: PF02615; SUPERFAMILY: SSF89733 L-sulfolactate dehydrogenase-like; Belongs to the LDH2/MDH2 oxidoreductase family.
Dshi_2040 protein networkhttps://string-db.org/network/398580.Dshi_2040SWISSPROT P37903: Universal stress protein F; PFAM: PF00582 Universal stress protein family; PRINTS: PR01438; SUPERFAMILY: Adenine nucleotide alpha hydrolases-like; COG: COG0589 - Universal stres [...]
tpa protein networkhttps://string-db.org/network/398580.Dshi_2042SWISSPROT Q9APM5: Taurine--pyruvate aminotransferase; COG: COG0161 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: PF00202; PROSITE: PS00600; Belongs to the class-III pyridoxa [...]
Dshi_2043 protein networkhttps://string-db.org/network/398580.Dshi_2043Hypothetical protein.
Dshi_2044 protein networkhttps://string-db.org/network/398580.Dshi_2044SWISSPROT P94426: HTH-type transcriptional regulatory protein gabR; COG: COG1167 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and [...]
xsc protein networkhttps://string-db.org/network/398580.Dshi_2045SWISSPROT Q84H44: Sulfoacetaldehyde acetyltransferase; PFAM: pfam02776, pfam00205, pfam02775; COG: COG0028 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenas [...]
Dshi_2047 protein networkhttps://string-db.org/network/398580.Dshi_2047Conserved hypothetical protein; PROSITE: PS51257; COG: COG3218 - ABC-type uncharacterized transport system, auxiliary component; related to membrane lipoprotein.
Dshi_2048 protein networkhttps://string-db.org/network/398580.Dshi_2048Hypothetical protein; PFAM: PF02470; COG: COG1463 - ABC-type transport system involved in resistance to organic solvents, periplasmic component.
Dshi_2049 protein networkhttps://string-db.org/network/398580.Dshi_2049ABC transporter ATP-binding protein; COG: COG1127 - ABC-type transport system involved in resistance to organic solvents, ATPase component; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM0038 [...]
Dshi_2050 protein networkhttps://string-db.org/network/398580.Dshi_2050TIGRFAM: TIGR00056 conserved hypothetical integral membrane protein; COG: COG0767 - ABC-type transport system involved in resistance to organic solvents, permease component; PROSITE: PS50801; PFA [...]
Dshi_2051 protein networkhttps://string-db.org/network/398580.Dshi_2051Conserved hypothetical protein.
Dshi_2052 protein networkhttps://string-db.org/network/398580.Dshi_2052Conserved hypothetical protein; COG: COG4256; similar to hemin uptake protein.
Dshi_2053 protein networkhttps://string-db.org/network/398580.Dshi_2053Hypothetical protein.
Dshi_2054 protein networkhttps://string-db.org/network/398580.Dshi_2054COG: COG0123 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein; PFAM: PF00850; PRINTS PR01270.
Dshi_2055 protein networkhttps://string-db.org/network/398580.Dshi_2055COG: COG0386 - Glutathione peroxidase; SWISSPROT P99097: Glutathione peroxidase homolog bsaA; PFAM: PF00255; PIR: PIRSF000303; PROSITE: PS00460; PRINTS: PR01011; Gene3D: G3DSA:3.40.30.10; Belongs [...]
Dshi_2056 protein networkhttps://string-db.org/network/398580.Dshi_2056Hypothetical protein; PFAM: PF00293; PRINTS: PR00502; Gene3D: G3DSA:3.90.79.10.
Dshi_2057 protein networkhttps://string-db.org/network/398580.Dshi_2057COG: COG5319 - Uncharacterized protein conserved in bacteria; PFAM: PF06676-Protein of unknown function (DUF1178).
Dshi_2058 protein networkhttps://string-db.org/network/398580.Dshi_2058Short chain dehydrogenase / reductase; COG: COG1028 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reduct [...]
Dshi_2059 protein networkhttps://string-db.org/network/398580.Dshi_2059Conserved hypothetical protein; COG: COG0645 - Predicted kinase; similar to adenylyl sulfate kinase.
acnB protein networkhttps://string-db.org/network/398580.Dshi_2060SWISSPROT P36683: Aconitate hydratase 2; TIGRFAM: TIGR00117 aconitate hydratase 2; COG: COG1049 - Aconitase B; PFAM: PF00330, PF06434; SUPERFAMILY: SSF53732, SSF52016, SSF74778.
lysC protein networkhttps://string-db.org/network/398580.Dshi_2061Aspartokinase; SWISSPROT P26512: Aspartokinase; TIGRFAM: TIGR00656 aspartate kinase, monofunctional class, TIGR00657 aspartate kinase; COG: COG0527 - Aspartokinases; Belongs to the aspartokinase [...]
ptsI protein networkhttps://string-db.org/network/398580.Dshi_2062SWISSPROT P08839: Phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: TIGR01417 phosphoenolpyruvate-protein phosphotransferase; COG: COG3605 - Signal transduction protein containing GAF and [...]
Dshi_2063 protein networkhttps://string-db.org/network/398580.Dshi_2063Conserved hypothetical protein; PFAM: PF00092; SMART: SM00327; PROSITE: PS50234; PRINTS: PR00453; related to von Willebrand factor type A.
Dshi_2064 protein networkhttps://string-db.org/network/398580.Dshi_2064Hypothetical protein; COG: COG3153 - Predicted acetyltransferase; PFAM: PF00583; PROSITE: PS51186; related to acetyltransferase, GNAT family.
Dshi_2065 protein networkhttps://string-db.org/network/398580.Dshi_2065Conserved hypothetical FMN binding protein; COG: COG1853 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family; SUPERFAMILY: FMN-binding split barrel; Gen [...]
Dshi_2066 protein networkhttps://string-db.org/network/398580.Dshi_2066Hypothetical protein.
Dshi_2067 protein networkhttps://string-db.org/network/398580.Dshi_2067SWISSPROT P0AFR2: Putative sulfate transporter ychM; COG: COG0659 - Sulfate permease and related transporters (MFS superfamily); PFAM: PF01740, PF00916; PROSITE: PS50801.
mtnP protein networkhttps://string-db.org/network/398580.Dshi_2068Phosphorylase family 2; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-pr [...]
Dshi_2069 protein networkhttps://string-db.org/network/398580.Dshi_2069Conserved hypothetical protein; COG: COG4321 - Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
Dshi_2070 protein networkhttps://string-db.org/network/398580.Dshi_2070Hypothetical protein; TIGRFAM: TIGR00068; COG: COG0346 - Lactoylglutathione lyase and related lyases; PFAM: PF00903-Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; similar to Lac [...]
Dshi_2071 protein networkhttps://string-db.org/network/398580.Dshi_2071Conserved hypothetical protein.
Dshi_2072 protein networkhttps://string-db.org/network/398580.Dshi_2072Putative Gluconate 2-dehydrogenase flavoprotein; COG: COG2303 - Choline dehydrogenase and related flavoproteins; PFAM: PF00732.
apt protein networkhttps://string-db.org/network/398580.Dshi_2074Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
Dshi_2075 protein networkhttps://string-db.org/network/398580.Dshi_2075COG: COG3439 - Uncharacterized conserved protein; PFAM: PF03625; SUPERFAMILY: TT1751-like.
Dshi_2076 protein networkhttps://string-db.org/network/398580.Dshi_2076FAD-linked oxidase; COG: COG0277 - FAD/FMN-containing dehydrogenases; PFAM: PF02913, PF01565.
Dshi_2077 protein networkhttps://string-db.org/network/398580.Dshi_2077Conserved hypothetical protein; COG: COG2220 - Predicted Zn-dependent hydrolases of the beta-lactamase fold; related to metal-dependent hydrolase/oxidoreductase.
tpiA protein networkhttps://string-db.org/network/398580.Dshi_2078Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the [...]
Dshi_2079 protein networkhttps://string-db.org/network/398580.Dshi_2079COG: COG0583 - Transcriptional regulator; PFAM: PF00126, PF03466; PROSITE: PS50931; SUPERFAMILY: SSF53850, SSF46785; lysR family; Belongs to the LysR transcriptional regulatory family.
metF protein networkhttps://string-db.org/network/398580.Dshi_2080SWISSPROT P0AEZ1: 5,10-methylenetetrahydrofolate reductase; PFAM: PF02219- Methylenetetrahydrofolate reductase; TIGRFAM: TIGR00676 5,10-methylenetetrahydrofolate reductase, prokaryotic form; COG: [...]
Dshi_2081 protein networkhttps://string-db.org/network/398580.Dshi_2081COG: COG2863 - Cytochrome c553; PROSITE: PS51007; Gene3D: G3DSA:1.10.760.10; SUPERFAMILY: SSF46626.
Dshi_2082 protein networkhttps://string-db.org/network/398580.Dshi_2082Putative sorbosone/glucose dehydrogenase; COG: COG2133 - Glucose/sorbosone dehydrogenases; SUPERFAMILY: Soluble quinoprotein glucose dehydrogenase; Gene3D: G3DSA:2.120.10.30.
Dshi_2083 protein networkhttps://string-db.org/network/398580.Dshi_2083COG: COG2050 - Uncharacterized protein, possibly involved in aromatic compounds catabolism; PFAM: PF03061; TIGRFAM: TIGR00369; related to thioesterase.
coxL3 protein networkhttps://string-db.org/network/398580.Dshi_2086SWISSPROT P19919: Carbon monoxide dehydrogenase large chain; COG: COG1529 - Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs; PFAM: pfam02738, pfam01315.
valS protein networkhttps://string-db.org/network/398580.Dshi_2087valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors [...]
Dshi_2088 protein networkhttps://string-db.org/network/398580.Dshi_2088TIGRFAM: TIGR01141 histidinol-phosphate aminotransferase; COG: COG0079 - Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; PFAM: PF00155; PROSITE: PS00599.
Dshi_2089 protein networkhttps://string-db.org/network/398580.Dshi_2089Hypothetical protein.
Dshi_2090 protein networkhttps://string-db.org/network/398580.Dshi_2090Putative serine--glyoxylate aminotransferase; COG: COG0075 - Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; PFAM: PF00266.
Dshi_2091 protein networkhttps://string-db.org/network/398580.Dshi_2091Putative glycosyltransferase; SUPERFAMILY: SSF53448-Nucleotide-diphospho-sugar transferases; PFAM: PF00535-Glycosyl transferase family 2; COG: COG0463 - Glycosyltransferases involved in cell wall [...]
Dshi_2092 protein networkhttps://string-db.org/network/398580.Dshi_2092Hypothetical protein; COG: COG0354 - Predicted aminomethyltransferase related to GcvT; PFAM: PF08669, PF01571; similar to aminomethyltransferase; Belongs to the GcvT family.
Dshi_2093 protein networkhttps://string-db.org/network/398580.Dshi_2093Conserved hypothetical protein.
efp protein networkhttps://string-db.org/network/398580.Dshi_2094Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functi [...]
Dshi_2095 protein networkhttps://string-db.org/network/398580.Dshi_2095Conserved hypothetical protein.
cobQ protein networkhttps://string-db.org/network/398580.Dshi_2096Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for eac [...]
Dshi_2097 protein networkhttps://string-db.org/network/398580.Dshi_2097Hypothetica protein.
Dshi_2098 protein networkhttps://string-db.org/network/398580.Dshi_2098SWISSPROT P02930: Outer membrane protein tolC [Precursor]; TIGRFAM: TIGR01844 type I secretion outer membrane protein, TolC family; COG: COG1538 - Outer membrane protein; PFAM: PF02321.
Dshi_2099 protein networkhttps://string-db.org/network/398580.Dshi_2099TIGRFAM: TIGR00080 protein-L-isoaspartate(D-aspartate) O-methyltransferase; COG: COG2518 - Protein-L-isoaspartate carboxylmethyltransferase; PFAM: PF01135; pcm.
Dshi_2100 protein networkhttps://string-db.org/network/398580.Dshi_2100Putative integrase; PFAM: PF00589; SUPERFAMILY: SSF56349; Gene3D: G3DSA:1.10.443.10; COG: COG4974 - Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
Dshi_2101 protein networkhttps://string-db.org/network/398580.Dshi_2101Hypothetical protein; SUPERFAMILY: SSF52540.
Dshi_2102 protein networkhttps://string-db.org/network/398580.Dshi_2102Hypothetical protein; PFAM: PF01555; related to DNA methylase N4/N6.
Dshi_2103 protein networkhttps://string-db.org/network/398580.Dshi_2103PFAM: PF01527-Transposase.
Dshi_2104 protein networkhttps://string-db.org/network/398580.Dshi_2104Putative integrase; COG: COG2801 - Transposase and inactivated derivatives; PFAM: PF00665; PROSITE: PS50994; SUPERFAMILY: SSF53098.
Dshi_2105 protein networkhttps://string-db.org/network/398580.Dshi_2105Hypothetical protein; PFAM: PF01555; PROSITE: PS00092; SUPERFAMILY: SSF53335; related to DNA methylase N6.
Dshi_2106 protein networkhttps://string-db.org/network/398580.Dshi_2106Hypothetical protein; PFAM: PF01381; PROSITE: PS50943; SMART: SM00530; SUPERFAMILY: SSF47413; Gene3D: G3DSA:1.10.260.40; related to HTH-type lambda repressor.
Dshi_2107 protein networkhttps://string-db.org/network/398580.Dshi_2107Hypothetical protein.
Dshi_2108 protein networkhttps://string-db.org/network/398580.Dshi_2108Hypothetical protein; COG: COG0025 - NhaP-type Na+/H+ and K+/H+ antiporters; PFAM: PF00027, PF00999; SMART: SM00100; PROSITE: PS50042; related to sodium/hydrogen exchanger.
Dshi_2109 protein networkhttps://string-db.org/network/398580.Dshi_2109Hypothetical protein; COG: COG3616 - Predicted amino acid aldolase or racemase; PFAM: PF01168; related to alanine racemase.
psuG protein networkhttps://string-db.org/network/398580.Dshi_2110Indigoidine synthase A-like protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, a [...]
purU protein networkhttps://string-db.org/network/398580.Dshi_2111Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
glyA1 protein networkhttps://string-db.org/network/398580.Dshi_2113Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major so [...]
Dshi_2114 protein networkhttps://string-db.org/network/398580.Dshi_2114Putative sarcosine oxidase, gamma subunit; SWISSPROT O87386: Sarcosine oxidase subunit alpha; TIGRFAM: TIGR01375 sarcosine oxidase, gamma subunit family, heterotetrameric form; COG: COG4583 - Sar [...]
soxA2 protein networkhttps://string-db.org/network/398580.Dshi_2115SWISSPROT Q46337: Sarcosine oxidase subunit alpha; TIGRFAM: TIGR01372 sarcosine oxidase, alpha subunit family, heterotetrameric form; COG: COG0404 - Glycine cleavage system T protein (aminomethyl [...]
Dshi_2116 protein networkhttps://string-db.org/network/398580.Dshi_2116SWISSPROT Q46336: Sarcosine oxidase subunit delta; PFAM: Sarcosine oxidase, delta subunit family; TIGRFAM: TIGR01374; COG: COG4311 - Sarcosine oxidase delta subunit; delta subunit (soxD).
soxB protein networkhttps://string-db.org/network/398580.Dshi_2117SWISSPROT P40875: sarcosine oxidase subunit beta; PFAM: PF01266-FAD dependent oxidoreductase; TIGRFAM: TIGR01373-Sarcosine oxidase, beta subunit, heterotetrameric; COG: COG0665 - Glycine/D-amino [...]
Dshi_2118 protein networkhttps://string-db.org/network/398580.Dshi_2118COG: COG4977 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: PF00165, PF01965; SMART: SM00342; PROSITE: PS01124; SUPERFAMILY: SSF46689; Gen [...]
Dshi_2119 protein networkhttps://string-db.org/network/398580.Dshi_2119Betaine/carnitine/choline transporter family protein; TIGRFAM: TIGR00842 - choline/carnitine/betaine transport; COG: COG1292 - Choline-glycine betaine transporter; PFAM: PF02028-BCCT family trans [...]
potA2 protein networkhttps://string-db.org/network/398580.Dshi_2120SWISSPROT P69874: Spermidine/putrescine import ATP-binding protein potA; COG: COG3842-ABC-type spermidine/putrescine transport systems, ATPase components; PFAM: PF00005, PF08402; PROSITE: PS00211 [...]
Dshi_2121 protein networkhttps://string-db.org/network/398580.Dshi_2121SWISSPROT P0AFK6: Spermidine/putrescine transport system permease protein potC; COG: COG1177 - ABC-type spermidine/putrescine transport system, permease component II; PFAM: PF00528; PROSITE: PS50 [...]
Dshi_2122 protein networkhttps://string-db.org/network/398580.Dshi_2122SWISSPROT P0AFK4: Spermidine/putrescine transport system permease protein potB; COG: COG1176-ABC-type spermidine/putrescine transport system, permease component I; PFAM: pfam00528; PROSITE: PS509 [...]
Dshi_2123 protein networkhttps://string-db.org/network/398580.Dshi_2123Hypothetical protein; COG: COG0687 - Spermidine/putrescine-binding periplasmic protein; PRINTS: PR00909; SWISSPROT P0AFK9: Spermidine/putrescine-binding periplasmic protein [Precursor]; similar t [...]
Dshi_2124 protein networkhttps://string-db.org/network/398580.Dshi_2124Hypothetical protein; PFAM: PF02633; COG: COG1402 - Uncharacterized protein, putative amidase; related to creatininase.
Dshi_2125 protein networkhttps://string-db.org/network/398580.Dshi_2125COG: COG0583 - Transcriptional regulator; PFAM: PF00126, PF03466; PROSITE: PS50931; SUPERFAMILY: SSF53850, SSF46785; lysR family; Belongs to the LysR transcriptional regulatory family.
Dshi_2126 protein networkhttps://string-db.org/network/398580.Dshi_2126Creatinase; SWISSPROT P38488: Creatinase; COG: COG0006 - Xaa-Pro aminopeptidase; PFAM: PF00557, PF01321.
Dshi_2127 protein networkhttps://string-db.org/network/398580.Dshi_2127Conserved hypothetical protein; SUPERFAMILY: SSF51182.
Dshi_2128 protein networkhttps://string-db.org/network/398580.Dshi_2128Conserved hypothetical protein; PFAM PF04403: Paraquat-inducible protein A; similar to paraquat inducible protein A.
radA protein networkhttps://string-db.org/network/398580.Dshi_2129Putative DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediate [...]
Dshi_2130 protein networkhttps://string-db.org/network/398580.Dshi_2130COG: COG1286 - Uncharacterized membrane protein, required for colicin V production; PFAM: PF02674-Colicin V production protein.
Dshi_2131 protein networkhttps://string-db.org/network/398580.Dshi_2131Hypothetical protein; No database hits, no shine dalgarno. Pseudogene??.
purF protein networkhttps://string-db.org/network/398580.Dshi_2132Amidophosphoribosyltransferase precursor; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
Dshi_2133 protein networkhttps://string-db.org/network/398580.Dshi_2133COG: COG3543 - Uncharacterized conserved protein; PFAM: PF06935-Protein of unknown function.
Dshi_2134 protein networkhttps://string-db.org/network/398580.Dshi_2134Putative BioY protein; COG: COG1268 - Uncharacterized conserved protein; PFAM: PF02632-BioY family; PIR: PIRSF016661- uncharacterized biotin biosynthesis protein, BioY type.
Dshi_2135 protein networkhttps://string-db.org/network/398580.Dshi_2135COG: COG4221 - Short-chain alcohol dehydrogenase of unknown specificity; PFAM: PF00106; PRINTS: PR00081.
surE protein networkhttps://string-db.org/network/398580.Dshi_21365'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
pcm protein networkhttps://string-db.org/network/398580.Dshi_2137protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl [...]
Dshi_2138 protein networkhttps://string-db.org/network/398580.Dshi_2138COG: COG0739 - Membrane proteins related to metalloendopeptidases; PFAM: PF01476, PF01551; SMART: SM00257; SUPERFAMILY: SSF51261; related to metalloprotease.
Dshi_2139 protein networkhttps://string-db.org/network/398580.Dshi_2139Puative integral membrane protein; SWISSPROT P31125: Probable amino-acid metabolite efflux pump; P0ABT8: Uncharacterized inner membrane transporter yiJE; PFAM: PF00892; SUPERFAMILY: SSF103481; re [...]
Dshi_2140 protein networkhttps://string-db.org/network/398580.Dshi_2140Hypothetical protein; PFAM: PF00999; COG: COG0025 - NhaP-type Na+/H+ and K+/H+ antiporters; related to sodium/hydrogen exchanger.
Dshi_2141 protein networkhttps://string-db.org/network/398580.Dshi_2141Conserved hypothetical protein; PFAM: PF04391.
fur-2 protein networkhttps://string-db.org/network/398580.Dshi_2142SWISSPROT P0A9A9: Ferric uptake regulation protein (fur); COG: COG0735 - Fe2+/Zn2+ uptake regulation proteins; PFAM: PF01475; SUPERFAMILY: SSF46785; Belongs to the Fur family.
Dshi_2143 protein networkhttps://string-db.org/network/398580.Dshi_2143COG: COG1741 - Pirin-related protein; PFAM: PF02678, PF05726; SUPERFAMILY: SSF51182; Belongs to the pirin family.
Dshi_2144 protein networkhttps://string-db.org/network/398580.Dshi_2144Threonine aldolase; SWISSPROT P75823: Low specificity L-threonine aldolase; O07051: L-allo-threonine aldolase COG: COG2008 - Threonine aldolase; PFAM: PF01212; SUPERFAMILY: SSF53383.
eno protein networkhttps://string-db.org/network/398580.Dshi_2145Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
Dshi_2146 protein networkhttps://string-db.org/network/398580.Dshi_2146Hypothetical protein; PFAM: PF05239; related to PRC-barrel.
Dshi_2147 protein networkhttps://string-db.org/network/398580.Dshi_2147Conserved hypothetical protein.
Dshi_2148 protein networkhttps://string-db.org/network/398580.Dshi_2148SWISSPROT Q68XV0: S-adenosylmethionine uptake transporter; PFAM: pfam00892; COG: COG5006 - Predicted permease, DMT superfamily.
Dshi_2149 protein networkhttps://string-db.org/network/398580.Dshi_2149Putative cupin; COG: COG3542 - Uncharacterized conserved protein; PFAM: PF06172 Cupin superfamily (DUF985).
anmK protein networkhttps://string-db.org/network/398580.Dshi_2150anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating Mur [...]
tyrS protein networkhttps://string-db.org/network/398580.Dshi_2151tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of [...]
Dshi_2152 protein networkhttps://string-db.org/network/398580.Dshi_2152-# KEGG: sil:SPO2232 hypothetical protein.
Dshi_2153 protein networkhttps://string-db.org/network/398580.Dshi_2153Putative peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the [...]
Dshi_2154 protein networkhttps://string-db.org/network/398580.Dshi_2154Putative peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the [...]
pgk protein networkhttps://string-db.org/network/398580.Dshi_2155Swiss-Prot: P0A799-Phosphoglycerate kinase PFAM: phosphoglycerate kinase KEGG: jan:Jann_1694 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
fda protein networkhttps://string-db.org/network/398580.Dshi_2156Swiss-Prot: Q07159-Fructose-bisphosphate aldolase class 1 PFAM: fructose-bisphosphate aldolase class-I.
Dshi_2157 protein networkhttps://string-db.org/network/398580.Dshi_2157Hypothetical protein; PFAM: Septum formation initiator KEGG: jan:Jann_1692 septum formation initiator; similar to septum formation initiator.
pdhA1 protein networkhttps://string-db.org/network/398580.Dshi_2158Pyruvate dehydrogenase E1 component subunit alpha; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
pdhB2 protein networkhttps://string-db.org/network/398580.Dshi_2159Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
pdhC1 protein networkhttps://string-db.org/network/398580.Dshi_2160Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
cysE protein networkhttps://string-db.org/network/398580.Dshi_2161Swiss-Prot: P0A9D4-Serine acetyltransferase TIGRFAM: serine O-acetyltransferase PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein.
Dshi_2162 protein networkhttps://string-db.org/network/398580.Dshi_2162Conserved hypothetical protein.
Dshi_2163 protein networkhttps://string-db.org/network/398580.Dshi_2163KEGG: sil:SPO2250 hypothetical protein.
Dshi_2164 protein networkhttps://string-db.org/network/398580.Dshi_2164Conserved hypothetical protein; TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family PFAM: NLP/P60 protein KEGG: sil:SPO2251 hypothetical protein; similar to phage cell wall peptidase, Nl [...]
Dshi_2165 protein networkhttps://string-db.org/network/398580.Dshi_2165PFAM: conserved hypothetical protein KEGG: rsq:Rsph17025_1087 hypothetical protein.
Dshi_2166 protein networkhttps://string-db.org/network/398580.Dshi_2166Conserved hypothetical protein TIGR02217, PFAM: conserved hypothetical protein, KEGG: sil:SPO2253 hypothetical protein.
Dshi_2167 protein networkhttps://string-db.org/network/398580.Dshi_2167Hypothetical protein; COG5281, Phage-related minor tail protein [Function unknown]; similar to Phage-related minor tail protein.
Dshi_2168 protein networkhttps://string-db.org/network/398580.Dshi_2168TIGR02216# phage conserved hypothetical protein.
Dshi_2169 protein networkhttps://string-db.org/network/398580.Dshi_2169KEGG: rsq:Rsph17025_1083 hypothetical protein.
Dshi_2170 protein networkhttps://string-db.org/network/398580.Dshi_2170TIGRFAM: phage major tail protein, TP901-1 family KEGG: sit:TM1040_1065 phage major tail protein, TP901-1; similar to Phage major tail protein, TP901-1.
Dshi_2171 protein networkhttps://string-db.org/network/398580.Dshi_2171KEGG: sil:SPO2258 hypothetical protein.
Dshi_2172 protein networkhttps://string-db.org/network/398580.Dshi_2172Conserved hypothetical protein; TIGR01563# phage head-tail adaptor, putative, SPP1 family; IPR013045 Conserved hypothetical protein 1563; TIGRFAM: phage head-tail adaptor, putative; KEGG: sil:SPO [...]
Dshi_2173 protein networkhttps://string-db.org/network/398580.Dshi_2173KEGG: rde:RD1_3027 hypothetical protein, TIGR02215 phage conserved hypothetical protein, phiE125 gp8 family.
Dshi_2174 protein networkhttps://string-db.org/network/398580.Dshi_2174TIGRFAM: phage major capsid protein, HK97 family PFAM: major capsid protein HK97 KEGG: jan:Jann_1635 phage major capsid protein, HK97; HK97 family.
Dshi_2175 protein networkhttps://string-db.org/network/398580.Dshi_2175TIGRFAM: phage prohead protease, HK97 family PFAM: peptidase U35 phage prohead HK97 KEGG: sil:SPO2262 phage prohead protease, HK97 family; HK97 family.
Dshi_2176 protein networkhttps://string-db.org/network/398580.Dshi_2176KEGG: jan:Jann_1633 hypothetical protein.
Dshi_2177 protein networkhttps://string-db.org/network/398580.Dshi_2177TIGRFAM: phage portal protein, HK97 family PFAM: portal protein KEGG: rde:RD1_3033 phage portal protein, putative; HK97 family.
Dshi_2178 protein networkhttps://string-db.org/network/398580.Dshi_2178PFAM: protein of unknown function DUF264 KEGG: rde:RD1_3034 hypothetical protein.
mltG protein networkhttps://string-db.org/network/398580.Dshi_2179Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
fabF protein networkhttps://string-db.org/network/398580.Dshi_21803-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
acpP protein networkhttps://string-db.org/network/398580.Dshi_2181Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
Dshi_2182 protein networkhttps://string-db.org/network/398580.Dshi_2182Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elon [...]
fabD protein networkhttps://string-db.org/network/398580.Dshi_2183Swiss-Prot hit: spP0AAI9 (FABD_ECOLI); TIGR00128# malonyl CoA-acyl carrier protein transacylase PFAM: Acyl transferase KEGG: rsq:Rsph17025_1221 malonyl CoA-acyl carrier protein transacylase.
Dshi_2184 protein networkhttps://string-db.org/network/398580.Dshi_2184PFAM: YceI family protein; cytochrome B561 KEGG: rde:RD1_3041 cytochrome b561, putative; Belongs to the UPF0312 family.
Dshi_2185 protein networkhttps://string-db.org/network/398580.Dshi_2185Hypothetical protein; COG2353 - Uncharacterized conserved protein PFAM: YceI family protein; related to YceI family protein; Belongs to the UPF0312 family.
rpsF protein networkhttps://string-db.org/network/398580.Dshi_218630S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
rpsR protein networkhttps://string-db.org/network/398580.Dshi_218730S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosom [...]
rplI protein networkhttps://string-db.org/network/398580.Dshi_2188Ribosomal protein L9; Binds to the 23S rRNA.
cpdB protein networkhttps://string-db.org/network/398580.Dshi_21892',3'-cyclic-nucleotide 2'-phosphodiesterase precursor; Swiss-Prot: P08331- 2,3-cyclic-nucleotide 2-phosphodiesterase [Precursor] PFAM: metallophosphoesterase; 5-Nucleotidase domain protein TIGR0 [...]
tig protein networkhttps://string-db.org/network/398580.Dshi_2190Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs t [...]
Dshi_2191 protein networkhttps://string-db.org/network/398580.Dshi_2191PFAM: ETC complex I subunit conserved region KEGG: sit:TM1040_0143 ETC complex I subunit conserved region.
uvrB protein networkhttps://string-db.org/network/398580.Dshi_2192UvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnorm [...]
Dshi_2193 protein networkhttps://string-db.org/network/398580.Dshi_2193Hypothetical protein.
Dshi_2194 protein networkhttps://string-db.org/network/398580.Dshi_2194Hypothetical protein.
Dshi_2196 protein networkhttps://string-db.org/network/398580.Dshi_2196Hypothetical protein.
Dshi_2197 protein networkhttps://string-db.org/network/398580.Dshi_2197Hypothetical protein; Swiss-Prot entry spP0A9W3: Uncharacterized ABC transporter ATP-binding protein yjjK PFAM: ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_3627 ABC transporter relat [...]
Dshi_2198 protein networkhttps://string-db.org/network/398580.Dshi_2198PFAM: MOSC domain containing protein (pfam03473) KEGG: sil:SPO0448 MOSC domain protein; similar to MOCO sulphurase (MOSC domain).
Dshi_2199 protein networkhttps://string-db.org/network/398580.Dshi_2199Aspartate/glutamate racemase family protein; TIGRFAM: aspartate racemase PFAM: Asp/Glu racemase KEGG: atc:AGR_L_3474 hypothetical protein.
Dshi_2200 protein networkhttps://string-db.org/network/398580.Dshi_2200PFAM: regulatory protein TetR KEGG: gvi:gll0188 TetR family transcriptional regulatory protein.
Dshi_2201 protein networkhttps://string-db.org/network/398580.Dshi_2201KEGG: tbd:Tbd_0484 hypothetical protein PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family (pfam04140) COG2020: Putative protein-S-isoprenylcysteine methyltransferase.
Dshi_2202 protein networkhttps://string-db.org/network/398580.Dshi_2202Hypothetical protein.
nadD protein networkhttps://string-db.org/network/398580.Dshi_2203Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
Dshi_2204 protein networkhttps://string-db.org/network/398580.Dshi_2204Hypothetical protein.
Dshi_2205 protein networkhttps://string-db.org/network/398580.Dshi_2205Conserved hypothetical protein.
lysS protein networkhttps://string-db.org/network/398580.Dshi_2206lysyl-tRNA synthetase; Swiss-Prot entries spQ9ABY6, spQ8YCM8: Lysyl-tRNA synthetase KEGG: sit:TM1040_2261 lysyl-tRNA synthetase TIGRFAM: lysyl-tRNA synthetase PFAM: Lysyl-tRNA synthetase class 1c [...]
Dshi_2207 protein networkhttps://string-db.org/network/398580.Dshi_2207KEGG:sil:SPO0457 hypothetical protein.
Dshi_2208 protein networkhttps://string-db.org/network/398580.Dshi_2208Putative D-alanyl-D-alanine carboxypeptidase/endopeptidase; Swiss-Prot: spP39844, spP45161: Penicillin-binding protein 4 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptid [...]
Dshi_2209 protein networkhttps://string-db.org/network/398580.Dshi_2209Conserved hypothetical protein; Swiss-Prot: spQ9ZE70 COG5006: predicted permease, DMT superfamily PFAM: protein of unknown function DUF6 transmembrane KEGG: jan:Jann_3630 protein of unknown funct [...]
Dshi_2210 protein networkhttps://string-db.org/network/398580.Dshi_2210KEGG: sil:SPO0459 hypothetical protein.
Dshi_2211 protein networkhttps://string-db.org/network/398580.Dshi_2211Conserved hypothetical protein; PFAM: protein of unknown function DUF427 KEGG: jan:Jann_3615 protein of unknown function DUF427.
Dshi_2212 protein networkhttps://string-db.org/network/398580.Dshi_2212Hypothetical protein; PFAM: pyridoxamine 5-phosphate oxidase-related FMN-binding KEGG: jan:Jann_3613 pyridoxamine 5-phosphate oxidase-related, FMN-binding; related to pyridoxamine 5-phosphate oxi [...]
Dshi_2213 protein networkhttps://string-db.org/network/398580.Dshi_2213PFAM: UspA domain protein KEGG: rde:RD1_4076 universal stress family protein, putative.
Dshi_2214 protein networkhttps://string-db.org/network/398580.Dshi_2214Conserved hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase KEGG: sil:SPO0462 antibiotic biosynthesis monooxygenase domain protein; related to antibiotic biosynthesis monooxygenas [...]
Dshi_2215 protein networkhttps://string-db.org/network/398580.Dshi_2215KEGG: rsq:Rsph17025_2878 hypothetical protein.
Dshi_2216 protein networkhttps://string-db.org/network/398580.Dshi_2216Conserved hypothetical protein; PFAM: pfam00991 ParA family ATPase COG1192: ATPases involved in chromosome partitioning; associated with ATPases involved in chromosome partitioning.
Dshi_2217 protein networkhttps://string-db.org/network/398580.Dshi_2217COG3809: Uncharacterized protein conserved in bacteria KEGG: rde:RD1_1249 hypothetical protein.
Dshi_2218 protein networkhttps://string-db.org/network/398580.Dshi_2218Swiss-Prot entry: P0A1A1 Acyl-CoA thioester hydrolase yciA COG1607: Acyl-CoA hydrolase PFAM: thioesterase superfamily protein KEGG: sil:SPO0440 thioesterase family protein.
Dshi_2219 protein networkhttps://string-db.org/network/398580.Dshi_2219PFAM: Cold-shock protein DNA-binding SMART: Cold shock protein KEGG: rde:RD1_1402 cold shock protein CspA-related protein, putative.
Dshi_2220 protein networkhttps://string-db.org/network/398580.Dshi_2220Conserved hypothetical protein; PFAM: protein of unknown function DUF1332 KEGG: sil:SPO1309 hypothetical protein COG4103: Uncharacterized protein conserved in bacteria.
Dshi_2221 protein networkhttps://string-db.org/network/398580.Dshi_2221Putative amino acid ABC transporter; COG4598: ABC-type histidine transport system, ATPase component PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1899 amino acid ABC transporter, [...]
Dshi_2222 protein networkhttps://string-db.org/network/398580.Dshi_2222PFAM: extracellular solute-binding protein family 3 COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain SMART: ionotropic glutamate receptor KEGG: rde [...]
Dshi_2223 protein networkhttps://string-db.org/network/398580.Dshi_2223Swiss-Prot entry: P52094 Histidine transport system permease protein hisQ COG4215: ABC-type arginine transport system, permease component KEGG: sit:TM1040_1713 binding-protein-dependent transport [...]
Dshi_2224 protein networkhttps://string-db.org/network/398580.Dshi_2224Putative polar amino acid ABC transporter; Swiss-Prot entry: P0A2I7 Histidine transport system permease protein hisM TIGRFAM: polar amino acid ABC transporter, inner membrane subunit PFAM: bindin [...]
Dshi_2225 protein networkhttps://string-db.org/network/398580.Dshi_2225PFAM: glutamine amidotransferase class-I KEGG: pde:Pden_1396 glutamine amidotransferase class-I COG0518: GMP synthase - Glutamine amidotransferase domain.
Dshi_2226 protein networkhttps://string-db.org/network/398580.Dshi_2226Glutamine synthetase family protein; Swiss-Prot: P78061-Gamma-glutamylputrescine synthetase / Q9HNI2-Glutamine synthetase PFAM: glutamine synthetase catalytic region KEGG: sil:SPO1300 glutamine s [...]
Dshi_2227 protein networkhttps://string-db.org/network/398580.Dshi_2227Swiss-Prot: P37906-Probable oxidoreductase PFAM: FAD dependent oxidoreductase KEGG: sit:TM1040_1839 FAD dependent oxidoreductase.
Dshi_2228 protein networkhttps://string-db.org/network/398580.Dshi_2228PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II KEGG: sil:SPO1295 aminotransferase, DegT/DnrJ/EryC1/Str [...]
Dshi_2229 protein networkhttps://string-db.org/network/398580.Dshi_2229Putative transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding Swiss-Prot: P0ACQ4-contains the same pfam domains KEGG: sil:SPO0980 transcriptional regulator, LysR famil [...]
Dshi_2230 protein networkhttps://string-db.org/network/398580.Dshi_2230TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein KEGG: rsq:Rsph17025_0856 polyhydroxyalkonat [...]
Dshi_2231 protein networkhttps://string-db.org/network/398580.Dshi_2231NCBI: YP_001043910 - hypothetical protein Rsph17029_2035.
Dshi_2232 protein networkhttps://string-db.org/network/398580.Dshi_2232NCBI: YP_682186 - hypothetical protein RD1_1889.
phbC protein networkhttps://string-db.org/network/398580.Dshi_2233Swiss-Prot: P50176 - Poly-beta-hydroxybutyrate polymerase TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I PFAM: Poly-beta-hydroxybutyrate polymerase domain protein KEGG: rsh:Rsph17029_203 [...]
Dshi_2234 protein networkhttps://string-db.org/network/398580.Dshi_2234TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular PFAM: PHB de-polymerase domain protein KEGG: sil:SPO1291 polyhydroxyalkanoate depolymerase, intracellular; intracellular.
Dshi_2235 protein networkhttps://string-db.org/network/398580.Dshi_2235COG0620: Methionine synthase II (cobalamin-independent) PFAM: Methionine synthase vitamin-B12 independent KEGG: jan:Jann_1114 methionine synthase, vitamin-B12 independent.
Dshi_2236 protein networkhttps://string-db.org/network/398580.Dshi_2236Hypothetical protein.
Dshi_2237 protein networkhttps://string-db.org/network/398580.Dshi_2237Conserved hypothetical protein; PFAM: protein of unknown function DUF1486 KEGG: rde:RD1_3943 hypothetical protein.
Dshi_2238 protein networkhttps://string-db.org/network/398580.Dshi_2238Swiss-Prot: P0ACP7-HTH-type transcriptional repressor purR KEGG: rde:RD1_3944 transcriptional regulatory protein, LacI family, putative PFAM: periplasmic binding protein/LacI transcriptional regu [...]
Dshi_2239 protein networkhttps://string-db.org/network/398580.Dshi_2239Short-chain dehydrogenase/reductase SDR; Swiss-Prot: P50199 Gluconate 5-dehydrogenase (SDR family protein) PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: jan:Jann_1106 sho [...]
Dshi_2240 protein networkhttps://string-db.org/network/398580.Dshi_2240Conserved hypothetical protein.
Dshi_2241 protein networkhttps://string-db.org/network/398580.Dshi_2241Conserved hypothetical protein; PFAM: protein of unknown function DUF1486 KEGG: rde:RD1_3946 hypothetical protein.
hisD3 protein networkhttps://string-db.org/network/398580.Dshi_2242Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
Dshi_2243 protein networkhttps://string-db.org/network/398580.Dshi_2243Conserved hypothetical protein; PFAM: alpha/beta hydrolase fold KEGG: rsp:RSP_0384 hypothetical protein.
Dshi_2244 protein networkhttps://string-db.org/network/398580.Dshi_2244Conserved hypothetical protein; PFAM: protein of unknown function DUF1052 KEGG: jan:Jann_3406 protein of unknown function DUF1052.
Dshi_2245 protein networkhttps://string-db.org/network/398580.Dshi_2245KEGG: rsq:Rsph17025_0423 hypothetical protein.
orfB-2 protein networkhttps://string-db.org/network/398580.Dshi_2246Hypothetical protein; COG3335: Transposase and inactivated derivatives PFAM: Integrase core domain; related to transposase and inactivated derivatives.
orfA-2 protein networkhttps://string-db.org/network/398580.Dshi_2247Hypothetical protein; COG3415 Transposase and inactivated derivatives; related to transposase and inactivated derivatives.
Dshi_2248 protein networkhttps://string-db.org/network/398580.Dshi_2248Hypothetical protein.
nusB protein networkhttps://string-db.org/network/398580.Dshi_2249N utilization substance protein B-like protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator [...]
ribH protein networkhttps://string-db.org/network/398580.Dshi_22506,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. [...]
ribB protein networkhttps://string-db.org/network/398580.Dshi_22513,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
ribC protein networkhttps://string-db.org/network/398580.Dshi_2252Swiss-Prot: P65327 Riboflavin synthase alpha chain TIGRFAM: riboflavin synthase, alpha subunit PFAM: Lumazine-binding protein KEGG: jan:Jann_3417 riboflavin synthase, alpha subunit.
Dshi_2253 protein networkhttps://string-db.org/network/398580.Dshi_2253Swiss-Prot: P42218 - Capsule polysaccharide export protein kpsS PFAM: Capsule polysaccharide biosynthesis protein KEGG: jan:Jann_3418 capsule polysaccharide biosynthesis.
Dshi_2254 protein networkhttps://string-db.org/network/398580.Dshi_2254Swiss-Prot: P0A932 - Putative polysaccharide export protein yccZ [Precursor] PFAM: polysaccharide export protein KEGG: sil:SPO1756 polysaccharide biosynthesis/export protein.
Dshi_2255 protein networkhttps://string-db.org/network/398580.Dshi_2255Swiss-Prot: P42217 - Capsule polysaccharide export protein kpsC PFAM: Capsule polysaccharide biosynthesis protein KEGG: sil:SPO1755 capsular polysaccharide export protein KpsC.
ribD protein networkhttps://string-db.org/network/398580.Dshi_2256Riboflavin biosynthesis protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal s [...]
nrdR protein networkhttps://string-db.org/network/398580.Dshi_2257Transcriptional repressor nrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
Dshi_2258 protein networkhttps://string-db.org/network/398580.Dshi_2258Conserved hypothetical protein; PFAM: protein of unknown function UPF0047 KEGG: sit:TM1040_2137 protein of unknown function UPF0047.
Dshi_2259 protein networkhttps://string-db.org/network/398580.Dshi_2259Hypothetical protein.
Dshi_2260 protein networkhttps://string-db.org/network/398580.Dshi_2260Hypothetical protein.
rpoD protein networkhttps://string-db.org/network/398580.Dshi_2261RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primar [...]
dnaG protein networkhttps://string-db.org/network/398580.Dshi_2262DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
Dshi_2263 protein networkhttps://string-db.org/network/398580.Dshi_2263Swiss-Prot: Q46338 - Sarcosine oxidase subunit gamma TIGR01375# sarcosine oxidase, gamma subunit family, heterotetrameric form; gamma subunit.
Dshi_2264 protein networkhttps://string-db.org/network/398580.Dshi_2264TIGRFAM: sarcosine oxidase, alpha subunit family (TIGR01372) Swiss-Prot: O87386 - Sarcosine oxidase subunit alpha PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridin [...]
Dshi_2265 protein networkhttps://string-db.org/network/398580.Dshi_2265Swiss-Prot: O87387 - Sarcosine oxidase subunit delta PFAM: Sarcosine oxidase delta subunit heterotetrameric KEGG: sil:SPO1745 sarcosine oxidase, delta subunit family; delta subunit heterotetramer [...]
Dshi_2266 protein networkhttps://string-db.org/network/398580.Dshi_2266Swiss-Prot: O87388 - Sarcosine oxidase subunit beta TIGRFAM: sarcosine oxidase, beta subunit family PFAM: FAD dependent oxidoreductase KEGG: jan:Jann_3445 sarcosine oxidase, beta subunit family.
Dshi_2267 protein networkhttps://string-db.org/network/398580.Dshi_2267Hypothetical protein; IPR002035: von Willebrand factor, type A.
Dshi_2268 protein networkhttps://string-db.org/network/398580.Dshi_2268PFAM: TadE family protein KEGG: rsh:Rsph17029_2053 hypothetical protein; associated with TadE-like protein family.
Dshi_2269 protein networkhttps://string-db.org/network/398580.Dshi_2269KEGG: rde:RD1_2616 hypothetical protein.
Dshi_2270 protein networkhttps://string-db.org/network/398580.Dshi_2270KEGG: sil:SPO1739 hypothetical protein.
Dshi_2271 protein networkhttps://string-db.org/network/398580.Dshi_2271PFAM: regulatory protein TetR KEGG: rsq:Rsph17025_0835 transcriptional regulator, TetR family; TetR-related.
Dshi_2272 protein networkhttps://string-db.org/network/398580.Dshi_2272Hypothetical protein.
Dshi_2273 protein networkhttps://string-db.org/network/398580.Dshi_2273Swiss-Prot: P29365 - Homoserine dehydrogenase PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding KEGG: sil:SPO1734 homoserine dehydrogenas [...]
glpX protein networkhttps://string-db.org/network/398580.Dshi_2274Swiss-Prot: P0A9C9 - Fructose-1,6-bisphosphatase class II glpX TIGRFAM: fructose-1,6-bisphosphatase, class II PFAM: GlpX family protein KEGG: rsq:Rsph17025_0833 fructose-1,6-bisphosphatase, class [...]
recJ protein networkhttps://string-db.org/network/398580.Dshi_2275Swiss-Prot: P21893 - Single-stranded-DNA-specific exonuclease recJ TIGRFAM: single-stranded-DNA-specific exonuclease RecJ PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 KEGG: si [...]
Dshi_2276 protein networkhttps://string-db.org/network/398580.Dshi_2276Hypothetical protein.
moeA2 protein networkhttps://string-db.org/network/398580.Dshi_2277Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
dmsA1 protein networkhttps://string-db.org/network/398580.Dshi_2278Swiss-Prot: Q57366 - Dimethyl sulfoxide reductase [Precursor] PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region KEGG: rde:RD1_3664 dimethyl sulfoxide reductase; Belongs [...]
Dshi_2279 protein networkhttps://string-db.org/network/398580.Dshi_2279Two component transcriptional regulator; Differing Swiss-Prot hits: P0A9Q1-Aerobic respiration control protein arcA; P0AA16-Transcriptional regulatory protein ompR; P38684-TorCAD operon transcrip [...]
Dshi_2280 protein networkhttps://string-db.org/network/398580.Dshi_2280Signal transduction histidine kinase; Differing Swiss-Prot hits: P0AEC3-Aerobic respiration control sensor protein arcB P39453-Sensor protein torS PFAM: response regulator receiver; ATP-binding r [...]
Dshi_2281 protein networkhttps://string-db.org/network/398580.Dshi_2281Swiss-Prot: P38683-Periplasmic protein torT [Precursor] PFAM: periplasmic binding protein/LacI transcriptional regulator TIGR02955: TMAO reductase system periplasmic protein TorT KEGG: rde:RD1_36 [...]
Dshi_2282 protein networkhttps://string-db.org/network/398580.Dshi_2282Putative transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type COG4977: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH do [...]
pamO protein networkhttps://string-db.org/network/398580.Dshi_2283Swiss-Prot: Q47PU3-Phenylacetone monooxygenase pfam00743: Flavin-binding monooxygenase-like KEGG: rha:RHA1_ro08185 monooxygenase.
Dshi_2284 protein networkhttps://string-db.org/network/398580.Dshi_2284Hypothetical protein; Swiss-Prot: Q11037-Uncharacterized protein Rv1367c/MT1414 PFAM: beta-lactamase COG1680: Beta-lactamase class C and other penicillin binding proteins; related to beta-lactama [...]
Dshi_2285 protein networkhttps://string-db.org/network/398580.Dshi_2285Hypothetical protein.
Dshi_2286 protein networkhttps://string-db.org/network/398580.Dshi_2286Hypothetical protein; COG1846: Transcriptional regulators PFAM: regulatory protein MarR KEGG: reu:Reut_B5322 regulatory protein, MarR; associated with transcriptional regulators, marR family.
Dshi_2287 protein networkhttps://string-db.org/network/398580.Dshi_2287TIGRFAM: TRAP transporter, 4TM/12TM fusion protein PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: rde:RD1_3648 hypothetical protein; 4TM/12TM fusion protein.
Dshi_2288 protein networkhttps://string-db.org/network/398580.Dshi_2288TIGRFAM: TRAP transporter solute receptor, TAXI family KEGG: rde:RD1_3647 TRAP-type transporter, periplasmic component, putative; TAXI family.
Dshi_2289 protein networkhttps://string-db.org/network/398580.Dshi_2289PFAM: amidohydrolase; Amidohydrolase 3 KEGG: slo:Shew_0983 amidohydrolase.
Dshi_2290 protein networkhttps://string-db.org/network/398580.Dshi_2290Hypothetical protein; Probably associated with sugar transport; PFAM: Carbohydrate-selective porin OprB KEGG: cps:CPS_0267 hypothetical protein.
Dshi_2291 protein networkhttps://string-db.org/network/398580.Dshi_2291Conserved hypothetical protein; PFAM: protein of unknown function DUF306 Meta and HslJ.
Dshi_2292 protein networkhttps://string-db.org/network/398580.Dshi_2292Conserved hypothetical protein; Pfam05976: DUF893.
Dshi_2293 protein networkhttps://string-db.org/network/398580.Dshi_2293PFAM: secretion protein HlyD family protein KEGG: rde:RD1_3593 multidrug resistance efflux pump, putative; HlyD family.
Dshi_2294 protein networkhttps://string-db.org/network/398580.Dshi_2294PQQ dehydrogenase family protein; PFAM: Pyrrolo-quinoline quinone KEGG: pfl:PFL_5668 quinate/shikimate dehydrogenase, putative COG4993: Glucose dehydrogenase.
Dshi_2295 protein networkhttps://string-db.org/network/398580.Dshi_2295PFAM: amidohydrolase; Amidohydrolase 3 COG1228: Imidazolonepropionase and related amidohydrolases KEGG: sus:Acid_5787 amidohydrolase.
Dshi_2296 protein networkhttps://string-db.org/network/398580.Dshi_2296PFAM: transposase IS4 family protein COG3293: Transposase and inactivated derivatives KEGG: pde:Pden_3333 transposase, IS4 family protein.
Dshi_2297 protein networkhttps://string-db.org/network/398580.Dshi_2297Hypothetical protein; COG3293: Transposase and inactivated derivatives KEGG: sit:TM1040_0173 transposase orfA IS5 family element; associated with replication, recombination and repair.
Dshi_2298 protein networkhttps://string-db.org/network/398580.Dshi_2298COG3457: Predicted amino acid racemase PFAM: alanine racemase domain protein, N-terminal domain; no C-terminal domain.
Dshi_2299 protein networkhttps://string-db.org/network/398580.Dshi_2299Conserved hypothetical protein; IPR011669: protein of unknown function DUF1611.
Dshi_2300 protein networkhttps://string-db.org/network/398580.Dshi_2300Hypothetical protein.
Dshi_2301 protein networkhttps://string-db.org/network/398580.Dshi_2301Hypothetical protein.
Dshi_2302 protein networkhttps://string-db.org/network/398580.Dshi_2302Hypothetical protein.
Dshi_2303 protein networkhttps://string-db.org/network/398580.Dshi_2303PFAM: NnrS family protein COG3213: Uncharacterized protein involved in response to NO KEGG: rde:RD1_1694 NnrS protein, putative; associated with NO response.
Dshi_2304 protein networkhttps://string-db.org/network/398580.Dshi_2304Putative regulator of cell morphogenesis and NO signaling; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
Dshi_2305 protein networkhttps://string-db.org/network/398580.Dshi_2305Hypothetical protein; PFAM: globin KEGG: hne:HNE_1540 protozoan/cyanobacterial globin family protein COG2346: truncated hemoglobins; similar to bacterial-like globin.
Dshi_2306 protein networkhttps://string-db.org/network/398580.Dshi_2306Putative transcriptional regulator; Swiss-Prot: P0AF63-HTH-type transcriptional repressor nsrR TIGR00738: rrf2 family protein (putative transcriptional regulator) PS51197: Rrf2-type HTH domain pr [...]
Dshi_2307 protein networkhttps://string-db.org/network/398580.Dshi_2307Hypothetical protein.
Dshi_2308 protein networkhttps://string-db.org/network/398580.Dshi_2308Hypothetical protein.
Dshi_2309 protein networkhttps://string-db.org/network/398580.Dshi_2309Arginase; Swiss-Prot: P39138-Arginase TIGRFAM: arginase PFAM: Arginase/agmatinase/formiminoglutamase COG0010: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family KEGG: rde:RD1_1416 [...]
Dshi_2310 protein networkhttps://string-db.org/network/398580.Dshi_2310Swiss-Prot: Q8FVE4-Ornithine cyclodeaminase arcB PFAM: ornithine cyclodeaminase/mu-crystallin KEGG: rde:RD1_1415 ornithine cyclodeaminase.
putA protein networkhttps://string-db.org/network/398580.Dshi_2311Bifunctional protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
Dshi_2312 protein networkhttps://string-db.org/network/398580.Dshi_2312Hypothetical protein.
Dshi_2313 protein networkhttps://string-db.org/network/398580.Dshi_2313PROSITE: PS50860-Aminoacyl-transfer RNA synthetases class-II profiles PFAM: Threonyl/alanyl tRNA synthetase SAD KEGG: rsh:Rsph17029_0823 threonyl/alanyl tRNA synthetase, SAD.
Dshi_2314 protein networkhttps://string-db.org/network/398580.Dshi_2314Swiss-Prot: P0ABK5-Cysteine synthase A PFAM: Pyridoxal-5-phosphate-dependent protein beta subunit COG0031: Cysteine synthase IMG Term.
Dshi_2315 protein networkhttps://string-db.org/network/398580.Dshi_2315PFAM: NUDIX hydrolase; AIG2 family protein KEGG: jan:Jann_1992 nucleoside diphosphate pyrophosphatase.
Dshi_2316 protein networkhttps://string-db.org/network/398580.Dshi_2316Hypothetical protein.
cfa protein networkhttps://string-db.org/network/398580.Dshi_2317Swiss-Prot: P0A9H7-Cyclopropane-fatty-acyl-phospholipid synthase PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12.
phrB protein networkhttps://string-db.org/network/398580.Dshi_2318Swiss-Prot: P00914-deoxyribodipyrimidine photo-lyase phrB PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
Dshi_2319 protein networkhttps://string-db.org/network/398580.Dshi_2319Putative quinone oxidoreductase; Swiss-Prot: P26646-Protein yhdH TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase [...]
gcvT1 protein networkhttps://string-db.org/network/398580.Dshi_2320Swiss-Prot: Q67N36-Aminomethyltransferase gcvT PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family.
Dshi_2321 protein networkhttps://string-db.org/network/398580.Dshi_2321Conserved hypothetical protein; Swiss-Prot: Q02886-Protein dinB PFAM: DinB family protein KEGG: acr:Acry_1562 DinB family protein COG2318: Uncharacterized protein conserved in bacteria; associate [...]
Dshi_2322 protein networkhttps://string-db.org/network/398580.Dshi_2322Conserved hypothetical protein; PFAM: protein of unknown function DUF1326 KEGG: rde:RD1_2286 hypothetical protein.
Dshi_2323 protein networkhttps://string-db.org/network/398580.Dshi_2323Hypothetical protein.
Dshi_2324 protein networkhttps://string-db.org/network/398580.Dshi_2324PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rde:RD1_2283 transcriptional regulator, GntR family, putative; GntR HTH.
Dshi_2325 protein networkhttps://string-db.org/network/398580.Dshi_2325Swiss-Prot: P31133-Putrescine-binding periplasmic protein [Precursor] SSF53850: Periplasmic binding protein-like II superfamily.
Dshi_2326 protein networkhttps://string-db.org/network/398580.Dshi_2326Hypothetical protein.
Dshi_2327 protein networkhttps://string-db.org/network/398580.Dshi_2327Hypothetical protein.
Dshi_2328 protein networkhttps://string-db.org/network/398580.Dshi_2328Conserved hypothetical protein; SSF88874: Receptor-binding domain of short tail fibre protein gp12 superfamily PFAM: Tail Collar domain protein.
Dshi_2329 protein networkhttps://string-db.org/network/398580.Dshi_2329Conserved hypothetical protein; PFAM: Tail Collar domain protein.
Dshi_2330 protein networkhttps://string-db.org/network/398580.Dshi_2330Conserved hypothetical protein; PFAM: protein of unknown function DUF1194 KEGG: rsq:Rsph17025_0723 protein of unknown function DUF1194.
Dshi_2331 protein networkhttps://string-db.org/network/398580.Dshi_2331Hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase COG2329: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides KEGG: reu:Reut_B5114 antibiotic biosynt [...]
Dshi_2332 protein networkhttps://string-db.org/network/398580.Dshi_2332Swiss-Prot: Q55027-Probable chromate transport protein TIGRFAM: chromate transporter, chromate ion transporter (CHR) family PFAM: Chromate transporter KEGG: jan:Jann_1226 chromate transporter.
Dshi_2333 protein networkhttps://string-db.org/network/398580.Dshi_2333COG3814: Uncharacterized protein conserved in bacteria PFAM: protein of unknown function DUF1321 KEGG: sit:TM1040_1450 protein of unknown function DUF1321.
fumC protein networkhttps://string-db.org/network/398580.Dshi_2334Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily [...]
Dshi_2335 protein networkhttps://string-db.org/network/398580.Dshi_2335PFAM: Ribbon-helix-helix protein, copG family COG4321:Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis.
Dshi_2336 protein networkhttps://string-db.org/network/398580.Dshi_2336KEGG: jan:Jann_3588 hypothetical protein.
Dshi_2337 protein networkhttps://string-db.org/network/398580.Dshi_2337PFAM: cytochrome P450 KEGG: jan:Jann_2396 cytochrome P450.
Dshi_2338 protein networkhttps://string-db.org/network/398580.Dshi_2338KEGG: sil:SPO1897 hypothetical protein.
Dshi_2339 protein networkhttps://string-db.org/network/398580.Dshi_2339PFAM: SirA family protein KEGG: sil:SPO1895 SirA family protein Swiss-Prot: Q2NWX1-Sulfurtransferase tusA; Belongs to the sulfur carrier protein TusA family.
rne protein networkhttps://string-db.org/network/398580.Dshi_2340Ribonuclease; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation o [...]
Dshi_2341 protein networkhttps://string-db.org/network/398580.Dshi_2341PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit Swiss-Prot: P44483-Putative TRAP transporter large permease protein HI0050 TIGR00786: TRAP transporter, DctM subunit KEGG: sil:S [...]
Dshi_2342 protein networkhttps://string-db.org/network/398580.Dshi_2342Hypothetical protein; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component COG4665: TRAP-type mannitol/chloroaromatic compound transport system, small permease component; ass [...]
Dshi_2343 protein networkhttps://string-db.org/network/398580.Dshi_2343Hypothetical protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
Dshi_2344 protein networkhttps://string-db.org/network/398580.Dshi_2344Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protei [...]
Dshi_2345 protein networkhttps://string-db.org/network/398580.Dshi_2345Two component transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domai [...]
tgt protein networkhttps://string-db.org/network/398580.Dshi_2346Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in [...]
Dshi_2347 protein networkhttps://string-db.org/network/398580.Dshi_2347Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding COG0583: transcriptional regulator Swiss-Prot: P55700-nodulation protein D 2 (Represses the expressio [...]
Dshi_2348 protein networkhttps://string-db.org/network/398580.Dshi_2348Conserved hypothetical protein; PFAM: protein of unknown function DUF59.
Dshi_2349 protein networkhttps://string-db.org/network/398580.Dshi_2349Swiss-Prot: P0AAC8-Iron-binding protein iscA TIGRFAM: iron-sulfur cluster assembly accessory protein PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
Dshi_2350 protein networkhttps://string-db.org/network/398580.Dshi_2350Swiss-Prot: Q58296-Putative molybdopterin biosynthesis protein MJ0886 PFAM: molybdopterin binding domain COG0303: Molybdopterin biosynthesis enzyme.
Dshi_2351 protein networkhttps://string-db.org/network/398580.Dshi_2351Hypothetical protein; IPR003777 / pfam02625 XdhC and CoxI family protein COG1975: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family; related to XdhC and CoxI family.
Dshi_2352 protein networkhttps://string-db.org/network/398580.Dshi_2352Conserved hypothetical protein; PFAM: Protein of unknown function DUF1800 COG5267: Uncharacterized protein conserved in bacteria.
Dshi_2353 protein networkhttps://string-db.org/network/398580.Dshi_2353Conserved hypothetical protein; PFAM: protein of unknown function DUF1501 COG4102: Uncharacterized protein conserved in bacteria.
Dshi_2354 protein networkhttps://string-db.org/network/398580.Dshi_2354MFS transporter; PFAM: major facilitator superfamily MFS_1 KEGG: reu:Reut_A3422 major facilitator superfamily MFS_1 Swiss-Prot: P77389-Inner membrane transport protein.
Dshi_2355 protein networkhttps://string-db.org/network/398580.Dshi_2355PFAM: VWA containing CoxE family protein KEGG: jan:Jann_1760 VWA containing CoxE-like.
Dshi_2356 protein networkhttps://string-db.org/network/398580.Dshi_2356Conserved hypothetical protein; PFAM: ATPase associated with various cellular activities AAA_5 KEGG: sil:SPO2646 hypothetical protein Swiss-Prot: Q4L6B6-Uncharacterized protein SH1500.
Dshi_2357 protein networkhttps://string-db.org/network/398580.Dshi_2357COG1960: Acyl-CoA dehydrogenases PFAM: Acyl-CoA dehydrogenase.
Dshi_2358 protein networkhttps://string-db.org/network/398580.Dshi_2358PFAM: Lysine exporter protein (LYSE/YGGA) KEGG: jan:Jann_3206 lysine exporter protein (LysE/YggA).
Dshi_2359 protein networkhttps://string-db.org/network/398580.Dshi_2359Hypothetical protein.
ureG protein networkhttps://string-db.org/network/398580.Dshi_2360Urease accessory protein; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
Dshi_2361 protein networkhttps://string-db.org/network/398580.Dshi_2361Hypothetical protein; COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit Swiss-Prot: P29911-Uncharacterized 13.8 kDa protein in nqo9-nqo10 intergenic region PFAM [...]
ureF protein networkhttps://string-db.org/network/398580.Dshi_2362Putative urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
ureE protein networkhttps://string-db.org/network/398580.Dshi_2363Urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
Dshi_2364 protein networkhttps://string-db.org/network/398580.Dshi_2364Hypothetical protein.
ureC protein networkhttps://string-db.org/network/398580.Dshi_2365Swiss-Prot: Q28RJ3-Urease subunit alpha ureC TIGRFAM: urease, alpha subunit PFAM: amidohydrolase; Urease alpha-subunit domain protein; Belongs to the metallo-dependent hydrolases superfamily. Ure [...]
Dshi_2366 protein networkhttps://string-db.org/network/398580.Dshi_2366Hypothetical protein.
Dshi_2367 protein networkhttps://string-db.org/network/398580.Dshi_2367Hypothetical protein.
ureB protein networkhttps://string-db.org/network/398580.Dshi_2368Swiss-Prot: Q28RJ8-Urease subunit beta ureB TIGRFAM: urease, beta subunit PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
ureA protein networkhttps://string-db.org/network/398580.Dshi_2369Swiss-Prot: Q9RFF5-Urease subunit gamma ureA TIGRFAM: urease, gamma subunit PFAM: Urease gamma subunit region; Belongs to the urease gamma subunit family.
ureD protein networkhttps://string-db.org/network/398580.Dshi_2370Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
pyrC2 protein networkhttps://string-db.org/network/398580.Dshi_2371Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
pyrE protein networkhttps://string-db.org/network/398580.Dshi_2372Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
dnaB protein networkhttps://string-db.org/network/398580.Dshi_2373Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DN [...]
Dshi_2374 protein networkhttps://string-db.org/network/398580.Dshi_2374Hypothetical protein; PFAM: histidine kinase HAMP region domain protein KEGG: rde:RD1_0232 HAMP domain protein, putative.
Dshi_2375 protein networkhttps://string-db.org/network/398580.Dshi_2375PFAM: protein of unknown function DUF1194 KEGG: mes:Meso_1299 protein of unknown function DUF1194.
Dshi_2376 protein networkhttps://string-db.org/network/398580.Dshi_2376Hypothetical protein.
Dshi_2377 protein networkhttps://string-db.org/network/398580.Dshi_2377PFAM: protein of unknown function DUF839 KEGG: rde:RD1_0767 hypothetical protein COG3211: Predicted phosphatase.
alr protein networkhttps://string-db.org/network/398580.Dshi_2378Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
Dshi_2379 protein networkhttps://string-db.org/network/398580.Dshi_2379Conserved hypothetical protein; Swiss-Prot: P64606-UPF0393 inner membrane protein yrbE TIGR00056: conserved hypothetical integral membrane protein PFAM: protein of unknown function DUF140 COG0767 [...]
Dshi_2380 protein networkhttps://string-db.org/network/398580.Dshi_2380ABC transporter; Swiss-Prot: P63386-Uncharacterized ABC transporter ATP-binding protein yrbF COG1127: ABC-type transport system involved in resistance to organic solvents, ATPase component.
lipB protein networkhttps://string-db.org/network/398580.Dshi_2381Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act [...]
Dshi_2382 protein networkhttps://string-db.org/network/398580.Dshi_2382Hypothetical protein.
ctaD protein networkhttps://string-db.org/network/398580.Dshi_2383Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme [...]
Dshi_2384 protein networkhttps://string-db.org/network/398580.Dshi_2384Hypothetical protein.
Dshi_2385 protein networkhttps://string-db.org/network/398580.Dshi_2385Hypothetical protein; Swiss-Prot:P0ABS1-DnaK suppressor protein dksA COG1734: DnaK suppressor protein; related to DnaK suppressor protein.
Dshi_2386 protein networkhttps://string-db.org/network/398580.Dshi_2386COG1610: Uncharacterized conserved protein Swiss-Prot: P54464-Uncharacterized protein yqeY.
carA protein networkhttps://string-db.org/network/398580.Dshi_2387Swiss-Prot: Q92N95-Carbamoyl-phosphate synthase small chain carA TIGRFAM: carbamoyl-phosphate synthase, small subunit PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small [...]
Dshi_2388 protein networkhttps://string-db.org/network/398580.Dshi_2388PFAM: glycosyl transferase family 2 Swiss-Prot: P75905-Biofilm PGA synthesis N-glycosyltransferase pgaC COG1215: Glycosyltransferases, probably involved in cell wall biogenesis; family 2.
Dshi_2389 protein networkhttps://string-db.org/network/398580.Dshi_2389Putative transcriptional regulator; Swiss-Prot: P76114-Uncharacterized HTH-type transcriptional regulator PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: sil:SPO1375 transcriptional [...]
Dshi_2390 protein networkhttps://string-db.org/network/398580.Dshi_2390Putative pyrimidine 5'-nucleotidase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5-nucleotidase PFAM: Haloacid dehalogenase domain protein hydrolase KEGG: sil:SPO1374 [...]
Dshi_2391 protein networkhttps://string-db.org/network/398580.Dshi_2391Hypothetical protein.
Dshi_2392 protein networkhttps://string-db.org/network/398580.Dshi_2392Swiss-Prot: P75728-2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, ubiF TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family PFAM: monooxygenase FAD-binding; FAD [...]
Dshi_2393 protein networkhttps://string-db.org/network/398580.Dshi_2393PFAM: Aminotransferase class-V KEGG: rde:RD1_1957 aminotransferase family protein, putative COG0075: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; class 5.
Dshi_2394 protein networkhttps://string-db.org/network/398580.Dshi_2394PFAM: regulatory protein AsnC/Lrp family; regulatory protein ArsR KEGG: sil:SPO1368 transcriptional regulator, AsnC family COG1522: Transcriptional regulators; AsnC family.
Dshi_2395 protein networkhttps://string-db.org/network/398580.Dshi_2395Transcriptional regulator; Swiss-Prot: P0ACJ5-Uncharacterized HTH-type transcriptional regulator ybaO PFAM: regulatory protein AsnC/Lrp family KEGG: sil:SPO1367 transcriptional regulator, AsnC fa [...]
ilvC protein networkhttps://string-db.org/network/398580.Dshi_2396Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yie [...]
glmM protein networkhttps://string-db.org/network/398580.Dshi_2397Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
folP protein networkhttps://string-db.org/network/398580.Dshi_2398Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate [...]
Dshi_2399 protein networkhttps://string-db.org/network/398580.Dshi_2399Swiss-Prot: Q9X8I0-Dihydroneopterin aldolase folB PFAM: dihydroneopterin aldolase TIGR00525: dihydroneopterin aldolase TIGR00526: FolB domain.
Dshi_2400 protein networkhttps://string-db.org/network/398580.Dshi_2400Hypothetical protein; PFAM: cell wall hydrolase SleB KEGG: sit:TM1040_2308 cell wall hydrolase, SleB COG3773: Cell wall hydrolyses involved in spore germination; related to cell wall hydrolase.
Dshi_2401 protein networkhttps://string-db.org/network/398580.Dshi_2401Swiss-Prot: P22983-Pyruvate, phosphate dikinase TIGR01828: pyruvate, phosphate dikinase PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile [...]
glyS protein networkhttps://string-db.org/network/398580.Dshi_2402Swiss-Prot: Q986B5-Glycyl-tRNA synthetase beta chain glyS TIGRFAM: glycyl-tRNA synthetase, beta subunit.
Dshi_2403 protein networkhttps://string-db.org/network/398580.Dshi_2403Hypothetical protein.
glyQ protein networkhttps://string-db.org/network/398580.Dshi_2404Swiss-Prot: Q92RL5-Glycyl-tRNA synthetase alpha chain glyQ TIGRFAM: glycyl-tRNA synthetase, alpha subunit PFAM: glycyl-tRNA synthetase alpha subunit; colocated with corresponding beta-subunit.
Dshi_2405 protein networkhttps://string-db.org/network/398580.Dshi_2405Hypothetical protein; Swiss-Prot: P55377-Uncharacterized protein y4bJ.
trkG protein networkhttps://string-db.org/network/398580.Dshi_2406Trk system potassium uptake protein; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
Dshi_2407 protein networkhttps://string-db.org/network/398580.Dshi_2407Putative glutathione S-transferase; Swiss-Prot: P77526-Uncharacterized GST-like protein PFAM: Glutathione S-transferase domain KEGG: rde:RD1_1937 glutathione S-transferase, putative.
metZ protein networkhttps://string-db.org/network/398580.Dshi_2410Trans-sulfuration enzyme family protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
folE2 protein networkhttps://string-db.org/network/398580.Dshi_2411Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
Dshi_2412 protein networkhttps://string-db.org/network/398580.Dshi_2412Swiss-Prot: Q8XTT4-Putative chloride channel protein clcB-like / P76175-Voltage-gated ClC-type chloride channel, clcB PFAM: Chloride channel core KEGG: jan:Jann_2746 Cl-channel, voltage gated; cl [...]
recN protein networkhttps://string-db.org/network/398580.Dshi_2413DNA repair protein; May be involved in recombinational repair of damaged DNA.
bamD protein networkhttps://string-db.org/network/398580.Dshi_2414Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
lpxC protein networkhttps://string-db.org/network/398580.Dshi_2415UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed st [...]
ftsZ protein networkhttps://string-db.org/network/398580.Dshi_2416Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing a [...]
ftsA protein networkhttps://string-db.org/network/398580.Dshi_2417Cell division protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
ftsQ protein networkhttps://string-db.org/network/398580.Dshi_2418Putative cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
ddl protein networkhttps://string-db.org/network/398580.Dshi_2419D-alanine--D-alanine ligase; Cell wall formation.
murB protein networkhttps://string-db.org/network/398580.Dshi_2420UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
Dshi_2421 protein networkhttps://string-db.org/network/398580.Dshi_2421Hypothetical protein.
murC protein networkhttps://string-db.org/network/398580.Dshi_2422UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
murG protein networkhttps://string-db.org/network/398580.Dshi_2423Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid interme [...]
Dshi_2424 protein networkhttps://string-db.org/network/398580.Dshi_2424Swiss-Prot: P0ABG4-Cell division protein ftsW TIGRFAM: cell division protein FtsW PFAM: cell cycle protein; colocated with ftsA,ftsZ and (putative)ftsQ; Belongs to the SEDS family.
Dshi_2425 protein networkhttps://string-db.org/network/398580.Dshi_2425Hypothetical protein; PFAM: Hemolysin-type calcium-binding region.
Dshi_2426 protein networkhttps://string-db.org/network/398580.Dshi_2426Hypothetical protein; PFAM: peptidase S8 / subtilase family KEGG: rde:RD1_4002 subtilisin carlsberg precursor, putative PTHR10795: subtilisin-related serine protease; related to subtilase.
Dshi_2427 protein networkhttps://string-db.org/network/398580.Dshi_2427KEGG: rde:RD1_4000 hypothetical protein.
Dshi_2428 protein networkhttps://string-db.org/network/398580.Dshi_2428Swiss-Prot: P0AGB6-RNA polymerase sigma-E factor rpoE TIGRFAM: RNA polymerase sigma-70 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; sigma-24 [...]
Dshi_2429 protein networkhttps://string-db.org/network/398580.Dshi_2429Swiss-Prot: P11553- L-fuculokinase fucK PFAM: carbohydrate kinase FGGY KEGG: rde:RD1_3075 carbohydrate kinases, putative COG1070: Sugar (pentulose and hexulose) kinases; FGGY family.
rhaM protein networkhttps://string-db.org/network/398580.Dshi_2430Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
Dshi_2431 protein networkhttps://string-db.org/network/398580.Dshi_2431Swiss-Prot: P0AE26- L-arabinose transport system permease protein araH PFAM: inner-membrane translocator KEGG: jan:Jann_2597 inner-membrane translocator.
Dshi_2432 protein networkhttps://string-db.org/network/398580.Dshi_2432Putative binding-protein-dependent transport system permease; Swiss-Prot: P77672-Inner membrane ABC transporter permease protein ydeY PFAM: inner-membrane translocator KEGG: rde:RD1_3078 ribose A [...]
rbsA1 protein networkhttps://string-db.org/network/398580.Dshi_2433Ribose import ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter su [...]
Dshi_2434 protein networkhttps://string-db.org/network/398580.Dshi_2434TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein KEGG: rde:RD1_3080 sugar ABC transporter, ATP binding protein, putative COG1879: ABC-type sugar transport system, periplasm [...]
Dshi_2435 protein networkhttps://string-db.org/network/398580.Dshi_2435Swiss-Prot: P0A9W0-HTH-type transcriptional regulator PFAM: regulatory protein DeoR KEGG: jan:Jann_2593 transcriptional regulator, DeoR family COG1349: Transcriptional regulators of sugar metabol [...]
Dshi_2436 protein networkhttps://string-db.org/network/398580.Dshi_2436Short-chain dehydrogenase/reductase; Swiss-Prot: P40747-Uncharacterized oxidoreductase yuxG TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase PFAM: short-chain dehydrogenase/reductas [...]
rhaA protein networkhttps://string-db.org/network/398580.Dshi_2437Swiss-Prot: P32170- L-rhamnose isomerase TIGR01748: L-rhamnose isomerase PFAM: L-rhamnose isomerase KEGG: jan:Jann_2591 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
Dshi_2438 protein networkhttps://string-db.org/network/398580.Dshi_2438PFAM: amidohydrolase 2 KEGG: pau:PA14_36110 putative hydrolase COG3618: Predicted metal-dependent hydrolase of the TIM-barrel fold.
Dshi_2439 protein networkhttps://string-db.org/network/398580.Dshi_2439Conserved hypothetical protein; PFAM: protein of unknown function DUF112 transmembrane COG3333: Uncharacterized protein conserved in bacteria.
Dshi_2440 protein networkhttps://string-db.org/network/398580.Dshi_2440Hypothetical protein.
Dshi_2441 protein networkhttps://string-db.org/network/398580.Dshi_2441Swiss-Prot: P0A177-UPF0065 protein in clcB-clcD intergenic region [Precursor] PFAM: Bordetella uptake gene (bug) product COG3181: Uncharacterized protein conserved in bacteria; similar to UPF0065 [...]
aldH1 protein networkhttps://string-db.org/network/398580.Dshi_2442Swiss-Prot: Q56694-NADP-dependent fatty aldehyde dehydrogenase aldH PFAM: aldehyde dehydrogenase KEGG: pde:Pden_4865 aldehyde dehydrogenase.
Dshi_2443 protein networkhttps://string-db.org/network/398580.Dshi_2443PTHR22981: 3-hydroxyisobutyrate dehydrogenase-related COG2084: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases KEGG: sil:SPO2416 3-hydroxyisobutyrate dehydrogenase [...]
pdxA2 protein networkhttps://string-db.org/network/398580.Dshi_2444Swiss-Prot: P19624- 4-hydroxythreonine-4-phosphate dehydrogenase TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase PFAM: Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA fam [...]
Dshi_2445 protein networkhttps://string-db.org/network/398580.Dshi_2445PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: sil:SPO2434 transcriptional regulator, GntR family COG1802: Transcriptional regulators; GntR family.
Dshi_2446 protein networkhttps://string-db.org/network/398580.Dshi_2446PFAM: dihydrodipicolinate synthetase Swiss-Prot: O69782-Dihydrodipicolinate synthase KEGG: sil:SPOA0244 dihydrodipicolinate synthase family protein; Belongs to the DapA family.
Dshi_2447 protein networkhttps://string-db.org/network/398580.Dshi_2447PFAM: Mandelate racemase/muconate lactonizing protein PTHR13794: enolase superfamily, mandelate racemase.
Dshi_2448 protein networkhttps://string-db.org/network/398580.Dshi_2448Conserved hypothetical protein; PFAM: protein of unknown function DUF112 transmembrane KEGG: jan:Jann_1159 protein of unknown function DUF112, transmembrane COG3333: Uncharacterized protein conse [...]
Dshi_2449 protein networkhttps://string-db.org/network/398580.Dshi_2449Hypothetical protein.
Dshi_2450 protein networkhttps://string-db.org/network/398580.Dshi_2450PFAM: conserved hypothetical protein KEGG: ecp:ECP_4043 hypothetical protein; similar to UPF0065 protein.
murD protein networkhttps://string-db.org/network/398580.Dshi_2451UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF [...]
Dshi_2452 protein networkhttps://string-db.org/network/398580.Dshi_2452Conserved hypothetical protein; PFAM: glycoside hydrolase family 25 KEGG: nha:Nham_3711 glycoside hydrolase, family 25 COG3757: Lyzozyme M1 (1,4-beta-N-acetylmuramidase); associated with glycosid [...]
Dshi_2453 protein networkhttps://string-db.org/network/398580.Dshi_2453Hypothetical protein.
Dshi_2454 protein networkhttps://string-db.org/network/398580.Dshi_2454Hypothetical protein.
Dshi_2455 protein networkhttps://string-db.org/network/398580.Dshi_2455PFAM: AAA ATPase central domain protein SMART: AAA ATPase KEGG: ppd:Ppro_0362 AAA ATPase, central domain protein; AAA family.
Dshi_2456 protein networkhttps://string-db.org/network/398580.Dshi_2456Hypothetical protein.
Dshi_2457 protein networkhttps://string-db.org/network/398580.Dshi_2457Hypothetical protein.
Dshi_2458 protein networkhttps://string-db.org/network/398580.Dshi_2458Hypothetical protein.
Dshi_2459 protein networkhttps://string-db.org/network/398580.Dshi_2459KEGG: ppd:Ppro_0366 hypothetical protein.
Dshi_2460 protein networkhttps://string-db.org/network/398580.Dshi_2460PFAM: GPW/gp25 family protein KEGG: ppd:Ppro_0367 gpW/GP25 family protein COG3628: Phage baseplate assembly protein W; related to gene 25-like lysozyme.
Dshi_2461 protein networkhttps://string-db.org/network/398580.Dshi_2461Conserved hypothetical protein; PFAM: PAAR repeat-containing protein KEGG: sdn:Sden_3002 PaaR COG4104: Uncharacterized conserved protein.
Dshi_2462 protein networkhttps://string-db.org/network/398580.Dshi_2462PFAM: Rhs element Vgr protein KEGG: ppd:Ppro_0369 rhs element Vgr protein TIGR01646: Rhs element Vgr protein; related to phage late control gene D.
Dshi_2463 protein networkhttps://string-db.org/network/398580.Dshi_2463Hypothetical protein.
Dshi_2464 protein networkhttps://string-db.org/network/398580.Dshi_2464TIGRFAM: conserved hypothetical phage tail protein (TIGR02241) PFAM: conserved hypothetical protein KEGG: rde:RD1_4219 hypothetical protein; phage tail region protein.
Dshi_2465 protein networkhttps://string-db.org/network/398580.Dshi_2465TIGRFAM: conserved hypothetical phage tail protein (TIGR02241) PFAM: conserved hypothetical protein KEGG: ppd:Ppro_0372 conserved hypothetical phage tail protein; phage tail region protein.
Dshi_2466 protein networkhttps://string-db.org/network/398580.Dshi_2466PFAM:Phage tail sheath protein KEGG: sdn:Sden_3007 hypothetical protein; related to phage tail sheath protein.
Dshi_2467 protein networkhttps://string-db.org/network/398580.Dshi_2467Hypothetical protein.
Dshi_2468 protein networkhttps://string-db.org/network/398580.Dshi_2468Hypothetical protein.
mraY protein networkhttps://string-db.org/network/398580.Dshi_2469phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY s [...]
murF protein networkhttps://string-db.org/network/398580.Dshi_2470UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of mure [...]
murE protein networkhttps://string-db.org/network/398580.Dshi_2471UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG [...]
ftsI2 protein networkhttps://string-db.org/network/398580.Dshi_2472Swiss-Prot: P0AD68-Peptidoglycan synthetase ftsI [Precursor] PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain COG0768: Cell division protein FtsI/pe [...]
Dshi_2473 protein networkhttps://string-db.org/network/398580.Dshi_2473Hypothetical protein.
mraW protein networkhttps://string-db.org/network/398580.Dshi_2474S-adenosyl-L-methionine-dependent methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
mraZ protein networkhttps://string-db.org/network/398580.Dshi_2475Protein mraZ; Swiss-Prot: Q5LU80-Protein mraZ TIGR00242: mraZ protein pfam02381: mraZ protein; Belongs to the MraZ family.
Dshi_2476 protein networkhttps://string-db.org/network/398580.Dshi_2476Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
Dshi_2477 protein networkhttps://string-db.org/network/398580.Dshi_2477Swiss-Prot: P0ACJ0- Leucine-responsive regulatory protein PFAM: regulatory protein AsnC/Lrp family KEGG: sil:SPO3612 transcriptional regulator, AsnC family.
Dshi_2478 protein networkhttps://string-db.org/network/398580.Dshi_2478Hypothetical protein; Swiss-Prot: P38101-Inner membrane protein yfiK PFAM: Lysine exporter protein (LYSE/YGGA) KEGG: sil:SPO3613 transporter, LysE family; similar to inner membrane protein yfiK.
Dshi_2479 protein networkhttps://string-db.org/network/398580.Dshi_2479Transcriptional regulator; Swiss-Prot:P30864-Uncharacterized HTH-type transcriptional regulator yafC PFAM: regulatory protein LysR; LysR substrate-binding; LysR family.
Dshi_2480 protein networkhttps://string-db.org/network/398580.Dshi_2480PFAM: short-chain dehydrogenase/reductase SDR COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
Dshi_2481 protein networkhttps://string-db.org/network/398580.Dshi_2481Hypothetical protein.
Dshi_2482 protein networkhttps://string-db.org/network/398580.Dshi_2482Hypothetical protein; TIGRFAM / PFAM: Ethyl tert-butyl ether degradation EthD; similar to EthD protein.
uvrD protein networkhttps://string-db.org/network/398580.Dshi_2483DNA helicase II; Swiss-Prot: P03018-DNA helicase II PFAM: UvrD/REP helicase KEGG: jan:Jann_2777 UvrD/REP helicase.
lldD1 protein networkhttps://string-db.org/network/398580.Dshi_2484Swiss-Prot: P33232- L-lactate dehydrogenase [cytochrome] lldD PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase KEGG: sit:TM1040_2026 L-lactate dehydrogenase (cytochrome).
Dshi_2485 protein networkhttps://string-db.org/network/398580.Dshi_2485Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate [...]
Dshi_2486 protein networkhttps://string-db.org/network/398580.Dshi_2486PFAM: Protein of unknown function DUF1826 KEGG: rde:RD1_1857 hypothetical protein.
Dshi_2487 protein networkhttps://string-db.org/network/398580.Dshi_2487Swiss-Prot: P31521- 47 kDa protein; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein.
Dshi_2488 protein networkhttps://string-db.org/network/398580.Dshi_2488PFAM: helix-turn-helix domain protein; protein of unknown function DUF955 KEGG: rde:RD1_2203 transcriptional regulator, putative; associated with regulation of transcription.
Dshi_2489 protein networkhttps://string-db.org/network/398580.Dshi_2489Swiss-Prot: O08374- Serine--glyoxylate aminotransferase (Inferred from homology) PFAM: aminotransferase class V KEGG: sme:SMa2139 probable SgaA serine-glyoxylate aminotransferase (SgaT).
citE1 protein networkhttps://string-db.org/network/398580.Dshi_2490Swiss-Prot: P0A9I1-Citrate lyase subunit beta PIRSF015582: citrate lyase, beta subunit [Validated]; subunit beta; Belongs to the HpcH/HpaI aldolase family.
sucC2 protein networkhttps://string-db.org/network/398580.Dshi_2491succinyl-CoA synthetase; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the on [...]
sucD2 protein networkhttps://string-db.org/network/398580.Dshi_2492ADP-forming succinyl-CoA ligase; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represent [...]
Dshi_2493 protein networkhttps://string-db.org/network/398580.Dshi_2493KEGG: pde:Pden_4111 hypothetical protein.
Dshi_2494 protein networkhttps://string-db.org/network/398580.Dshi_2494IPR003673: CoA-transferase family III KEGG: rrs:RoseRS_4174 acyl-CoA transferase/carnitine dehydratase-like protei; Belongs to the CoA-transferase III family.
Dshi_2495 protein networkhttps://string-db.org/network/398580.Dshi_2495Swiss-Prot: P75925-Cytochrome b561 homolog 2 PFAM: cytochrome B561.
Dshi_2496 protein networkhttps://string-db.org/network/398580.Dshi_2496Hypothetical protein; PFAM: EF hand IPR002048: Calcium-binding EF-hand KEGG: rsh:Rsph17029_2073 putative signal transduction protein with EFhand domain; associated with signal transduction.
Dshi_2497 protein networkhttps://string-db.org/network/398580.Dshi_2497Swiss-Prot: P0AA16-Transcriptional regulatory protein (ompR) PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: rpe:RPE_4561 two component transcriptional regulator [...]
Dshi_2498 protein networkhttps://string-db.org/network/398580.Dshi_2498Integral membrane sensor signal transduction histidine kinase; Swiss-Prot: P0AEJ4-Osmolarity sensor protein (envZ) PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region dom [...]
Dshi_2499 protein networkhttps://string-db.org/network/398580.Dshi_2499Hypothetical protein; Swiss-Prot: P0A0V3-Outer membrane protein class 4 [Precursor] PFAM: OmpA/MotB domain protein KEGG: rde:RD1_1126 OmpA family domain protein COG2885: Outer membrane protein an [...]
Dshi_2501 protein networkhttps://string-db.org/network/398580.Dshi_2501ABC transporter; Swiss-Prot: P18770-Cyclolysin secretion/processing ATP-binding protein cyaB; P26760-Toxin RTX-I translocation ATP-binding protein PFAM: ABC transporter transmembrane region; ABC [...]
Dshi_2502 protein networkhttps://string-db.org/network/398580.Dshi_2502Secretion protein; Swiss-Prot: Q03025-Alkaline protease secretion protein aprE TIGRFAM: type I secretion membrane fusion protein, HlyD family PFAM: secretion protein HlyD family protein KEGG: rde [...]
Dshi_2503 protein networkhttps://string-db.org/network/398580.Dshi_2503Hypothetical protein.
Dshi_2504 protein networkhttps://string-db.org/network/398580.Dshi_2504KEGG: jan:Jann_0233 hypothetical protein.
Dshi_2505 protein networkhttps://string-db.org/network/398580.Dshi_2505Hypothetical protein.
Dshi_2506 protein networkhttps://string-db.org/network/398580.Dshi_2506Hypothetical protein.
Dshi_2507 protein networkhttps://string-db.org/network/398580.Dshi_2507Transposase; Swiss-Prot: P17985-Insertion element ISR1 uncharacterized 10 kDa protein A3 IPR002514: Transposase IS3/IS911 PFAM: transposase IS3/IS911 family protein KEGG: rde:RD1_3450 inverted re [...]
Dshi_2508 protein networkhttps://string-db.org/network/398580.Dshi_2508Integrase; Swiss-Prot: P25438-Insertion element IS476 uncharacterized 39.2 kDa protein PFAM: Integrase catalytic region KEGG: rde:RD1_3449 integrase, catalytic domain, putativ; catalytic region.
Dshi_2509 protein networkhttps://string-db.org/network/398580.Dshi_2509Integrase; Swiss-Prot: P25438-Insertion element IS476 uncharacterized 39.2 kDa protein PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase, catalytic domain; catalytic region.
Dshi_2510 protein networkhttps://string-db.org/network/398580.Dshi_2510Transposase; Swiss-Prot: P17985-Insertion element ISR1 uncharacterized 10 kDa protein A3 PFAM: transposase IS3/IS911 family protein KEGG: mag:amb0646 insertion element ISR1 hypothetical 10 kDa pr [...]
Dshi_2511 protein networkhttps://string-db.org/network/398580.Dshi_2511Hypothetical protein.
dusA protein networkhttps://string-db.org/network/398580.Dshi_2512tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines [...]
Dshi_2513 protein networkhttps://string-db.org/network/398580.Dshi_2513KEGG: sil:SPO1770 hypothetical protein.
Dshi_2514 protein networkhttps://string-db.org/network/398580.Dshi_2514KEGG: sil:SPO1769 hypothetical protein.
Dshi_2515 protein networkhttps://string-db.org/network/398580.Dshi_2515Swiss-Prot: P0AFR2-Putative sulfate transporter ychM TIGRFAM: sulfate transporter PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter KEGG: sit:TM1040_3648 sulfate pe [...]
Dshi_2516 protein networkhttps://string-db.org/network/398580.Dshi_2516Hypothetical protein.
Dshi_2517 protein networkhttps://string-db.org/network/398580.Dshi_2517Hypothetical protein; Swiss-Prot: Q8UAA9-Beta-lactamase hydrolase-like protein PFAM: beta-lactamase domain protein KEGG: rde:RD1_0785 metallo-beta-lactamase family protein; related to beta-lactam [...]
Dshi_2518 protein networkhttps://string-db.org/network/398580.Dshi_2518Conserved hypothetical protein; Swiss-Prot: Q87AD3-UPF0394 membrane protein PD_1893 PFAM: protein of unknown function DUF395 YeeE/YedE KEGG: sit:TM1040_3646 protein of unknown function DUF395, Ye [...]
Dshi_2519 protein networkhttps://string-db.org/network/398580.Dshi_2519Conserved hypothetical protein; PFAM: protein of unknown function DUF395 YeeE/YedE KEGG: jan:Jann_2818 protein of unknown function DUF395, YeeE/YedE.
Dshi_2520 protein networkhttps://string-db.org/network/398580.Dshi_2520KEGG: rde:RD1_0788 hypothetical protein.
Dshi_2521 protein networkhttps://string-db.org/network/398580.Dshi_2521Transcriptional regulator; Swiss-Prot: P0ACJ8-Catabolite gene activator crp PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp KEGG: sil:SPO1615 cyclic nucleotide-binding protein; Crp/ [...]
Dshi_2522 protein networkhttps://string-db.org/network/398580.Dshi_2522Putative peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection [...]
Dshi_2523 protein networkhttps://string-db.org/network/398580.Dshi_2523Swiss-Prot: P0ACQ4-Hydrogen peroxide-inducible genes activator oxyR PFAM: regulatory protein LysR; LysR substrate-binding KEGG: rpb:RPB_4602 transcriptional regulator, LysR family.
Dshi_2524 protein networkhttps://string-db.org/network/398580.Dshi_2524TIGR00816: C4-dicarboxylate transporter/malic acid transport protein PFAM: C4-dicarboxylate transporter/malic acid transport protein KEGG: jan:Jann_2959 C4-dicarboxylate transporter/malic acid tr [...]
Dshi_2525 protein networkhttps://string-db.org/network/398580.Dshi_2525KEGG: sil:SPO1613 hypothetical protein.
Dshi_2526 protein networkhttps://string-db.org/network/398580.Dshi_2526Putative sulfide quinone-rductase; PTHR10632: Sulfide quinone-reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
Dshi_2527 protein networkhttps://string-db.org/network/398580.Dshi_2527Hypothetical protein.
Dshi_2528 protein networkhttps://string-db.org/network/398580.Dshi_2528Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family KEGG: rru:Rru_A1245 transcriptional regulator, Crp/Fnr family; Crp/Fnr family.
Dshi_2529 protein networkhttps://string-db.org/network/398580.Dshi_2529KEGG: sil:SPO1611 hypothetical protein.
Dshi_2530 protein networkhttps://string-db.org/network/398580.Dshi_2530Hypothetical protein.
Dshi_2531 protein networkhttps://string-db.org/network/398580.Dshi_2531Hypothetical protein.
Dshi_2532 protein networkhttps://string-db.org/network/398580.Dshi_2532Hypothetical protein.
Dshi_2533 protein networkhttps://string-db.org/network/398580.Dshi_2533Hypothetical protein.
Dshi_2534 protein networkhttps://string-db.org/network/398580.Dshi_2534Conserved hypothetical protein; PFAM: Integral membrane protein DUF112 COG3333: Uncharacterized protein conserved in bacteria.
Dshi_2535 protein networkhttps://string-db.org/network/398580.Dshi_2535Hypothetical protein.
Dshi_2536 protein networkhttps://string-db.org/network/398580.Dshi_2536Hypothetical protein.
Dshi_2537 protein networkhttps://string-db.org/network/398580.Dshi_2537Swiss-Prot: Q59727- 4,5-dihydroxyphthalate decarboxylase [predicted].
Dshi_2538 protein networkhttps://string-db.org/network/398580.Dshi_2538Conserved hypothetical protein; Swiss-Prot: P76004-Uncharacterized protein ycgM PFAM: fumarylacetoacetate (FAA) hydrolase KEGG: rsh:Rsph17029_0213 fumarylacetoacetate (FAA) hydrolase; related to [...]
Dshi_2539 protein networkhttps://string-db.org/network/398580.Dshi_2539Swiss-Prot: P39161-Uxu operon transcriptional regulator PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: ent:Ent638_0750 GntR domain protein; gntR family.
Dshi_2540 protein networkhttps://string-db.org/network/398580.Dshi_2540Hypothetical protein.
Dshi_2541 protein networkhttps://string-db.org/network/398580.Dshi_2541Transcriptional regulator; Swiss-Prot: P0ACL7- Putative L-lactate dehydrogenase operon regulatory protein PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rle:RL4574 putative GntR fam [...]
Dshi_2542 protein networkhttps://string-db.org/network/398580.Dshi_2542Conserved hypothetical protein; Swiss-Prot: P76004-Uncharacterized protein ycgM PFAM: fumarylacetoacetate (FAA) hydrolase KEGG: bxe:Bxe_A3618 putative hydrolase; related to fumarylacetoacetate (F [...]
Dshi_2543 protein networkhttps://string-db.org/network/398580.Dshi_2543Putative binding protein; Swiss-Prot: P40400-Putative aliphatic sulfonates-binding protein [Precursor] PFAM: NMT1/THI5 like domain protein.
Dshi_2544 protein networkhttps://string-db.org/network/398580.Dshi_2544ABC transporter; Swiss-Prot: Q57855-Uncharacterized ABC transporter ATP-binding protein MJ0412 PFAM: ABC transporter related SMART: AAA ATPase KEGG: rsh:Rsph17029_3905 ABC transporter related; AT [...]
Dshi_2545 protein networkhttps://string-db.org/network/398580.Dshi_2545Swiss-Prot: P40401-Putative aliphatic sulfonates transport permease protein PFAM: binding-protein-dependent transport systems inner membrane component; inner membrane component.
Dshi_2546 protein networkhttps://string-db.org/network/398580.Dshi_2546Dehydrogenase; Swiss-Prot: O34736-Uncharacterized oxidoreductase yjmC PFAM: Malate/L-lactate dehydrogenase KEGG: tth:TT_P0035 dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
Dshi_2547 protein networkhttps://string-db.org/network/398580.Dshi_2547Hypothetical protein.
Dshi_2548 protein networkhttps://string-db.org/network/398580.Dshi_2548COG5412: Phage-related protein.
Dshi_2549 protein networkhttps://string-db.org/network/398580.Dshi_2549Hypothetical protein; PFAM: cell surface receptor IPT/TIG domain protein KEGG: rrs:RoseRS_1653 hypothetical protein.
Dshi_2550 protein networkhttps://string-db.org/network/398580.Dshi_2550Hypothetical protein; PFAM: impB/mucB/samB family SSF50969: quinoprotein amine dehydrogenase, beta chain-like KEGG: gme:Gmet_1144 hypothetical protein.
Dshi_2551 protein networkhttps://string-db.org/network/398580.Dshi_2551KEGG: gme:Gmet_1142 hypothetical protein.
Dshi_2552 protein networkhttps://string-db.org/network/398580.Dshi_2552TIGR02243: conserved hypothetical protein, phage tail-like region KEGG: aeh:Mlg_1745 hypothetical protein.
Dshi_2553 protein networkhttps://string-db.org/network/398580.Dshi_2553Hypothetical protein.
Dshi_2554 protein networkhttps://string-db.org/network/398580.Dshi_2554Hypothetical protein; PFAM: Gene 25-like lysozyme KEGG: aeh:Mlg_1747 hypothetical protein; related to gene 25-like lysozyme.
Dshi_2555 protein networkhttps://string-db.org/network/398580.Dshi_2555Conserved hypothetical protein; PFAM: Protein of unknown function, DUF586 COG3501: Uncharacterized protein conserved in bacteria.
Dshi_2556 protein networkhttps://string-db.org/network/398580.Dshi_2556Conserved hypothetical protein; PFAM: Phage late control gene D protein KEGG: gme:Gmet_1137 hypothetical protein COG3500: Phage protein D.
Dshi_2557 protein networkhttps://string-db.org/network/398580.Dshi_2557Hypothetical protein.
Dshi_2558 protein networkhttps://string-db.org/network/398580.Dshi_2558Hypothetical protein.
Dshi_2559 protein networkhttps://string-db.org/network/398580.Dshi_2559AAA ATPase; Swiss-Prot: P55530-Uncharacterized AAA family ATPase y4kL PFAM: AAA ATPase central domain protein SMART: AAA ATPase KEGG: gme:Gmet_1133 AAA ATPase, central region; central domain prot [...]
Dshi_2560 protein networkhttps://string-db.org/network/398580.Dshi_2560Hypothetical protein; ##.
Dshi_2561 protein networkhttps://string-db.org/network/398580.Dshi_2561Hypothetical protein.
Dshi_2562 protein networkhttps://string-db.org/network/398580.Dshi_2562Hypothetical protein.
Dshi_2563 protein networkhttps://string-db.org/network/398580.Dshi_2563TIGRFAM: conserved hypothetical phage tail protein PFAM: conserved hypothetical protein KEGG: aeh:Mlg_1757 conserved hypothetical phage tail protein; phage tail region.
Dshi_2564 protein networkhttps://string-db.org/network/398580.Dshi_2564PFAM: tail sheath protein KEGG: gme:Gmet_1128 phage tail sheath protein; related to phage tail sheath protein.
Dshi_2565 protein networkhttps://string-db.org/network/398580.Dshi_2565Response regulator protein; Swiss-Prot: O32197-Sensory transduction protein PFAM: regulatory protein LuxR; response regulator receiver KEGG: sen:SACE_5003 two component transcriptional regulator, [...]
Dshi_2566 protein networkhttps://string-db.org/network/398580.Dshi_2566Putative bifunctional enzyme; PFAM: dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; transketolase / dehydrogenase.
Dshi_2567 protein networkhttps://string-db.org/network/398580.Dshi_2567Multi-sensor signal transduction histidine kinase; Swiss-Prot: P26489-Sensor protein fixL TIGRFAM: PAS sensor protein PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain pro [...]
Dshi_2568 protein networkhttps://string-db.org/network/398580.Dshi_2568Response regulator protein; Swiss-Prot: P10958-Transcriptional regulatory protein fixJ PFAM: regulatory protein LuxR; response regulator receiver KEGG: rde:RD1_3086 transcriptional regulatory pro [...]
Dshi_2569 protein networkhttps://string-db.org/network/398580.Dshi_2569Swiss-Prot: P75747-Protein abrB (multi-pass membrane protein / probably involved in gene regulation) PFAM: putative ammonia monooxygenase KEGG: rde:RD1_2159 hypothetical protein; similar to Prote [...]
Dshi_2570 protein networkhttps://string-db.org/network/398580.Dshi_2570Transcriptional regulator; Swiss-Prot: P76114-Uncharacterized HTH-type transcriptional regulator yncC PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: bja:bll2319 transcriptional regu [...]
Dshi_2571 protein networkhttps://string-db.org/network/398580.Dshi_2571Swiss-Prot: P63177- 23S rRNA (guanosine-2-O-)-methyltransferase rlmB TIGRFAM: RNA methyltransferase, TrmH family, group 3 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferas [...]
Dshi_2572 protein networkhttps://string-db.org/network/398580.Dshi_2572KEGG: jan:Jann_2800 hypothetical protein.
Dshi_2573 protein networkhttps://string-db.org/network/398580.Dshi_2573KEGG: rde:RD1_2147 hypothetical protein.
Dshi_2574 protein networkhttps://string-db.org/network/398580.Dshi_2574PFAM: CoA-binding domain protein KEGG: sil:SPO1153 CoA-binding domain protein.
hisE protein networkhttps://string-db.org/network/398580.Dshi_2575Swiss-Prot: P06989-Phosphoribosyl-ATP pyrophosphatase PFAM: phosphoribosyl-ATP pyrophosphohydrolase.
hisF protein networkhttps://string-db.org/network/398580.Dshi_2576Imidazole glycerol phosphate synthase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and [...]
Dshi_2577 protein networkhttps://string-db.org/network/398580.Dshi_2577PFAM: putative RNA methylase KEGG: pde:Pden_2378 putative RNA methylase.
hisA protein networkhttps://string-db.org/network/398580.Dshi_2578Swiss-Prot: Q28NK3- 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isom [...]
Dshi_2579 protein networkhttps://string-db.org/network/398580.Dshi_2579COG4731: Uncharacterized protein conserved in bacteria.
hrpB protein networkhttps://string-db.org/network/398580.Dshi_2580Swiss-Prot: P37024- ATP-dependent RNA helicase hrpB TIGRFAM: ATP-dependent helicase HrpB PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; [...]
Dshi_2581 protein networkhttps://string-db.org/network/398580.Dshi_2581Hypothetical protein.
Dshi_2582 protein networkhttps://string-db.org/network/398580.Dshi_2582Swiss-Prot: P27254-LAO/AO transport system kinase TIGRFAM: LAO/AO transport system ATPase PFAM: ArgK protein.
rpmB protein networkhttps://string-db.org/network/398580.Dshi_2583Swiss-Prot: Q5LUS9- 50S ribosomal protein L28 TIGR00009: ribosomal protein L28 PFAM: ribosomal protein L28 KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 [...]
Dshi_2584 protein networkhttps://string-db.org/network/398580.Dshi_2584KEGG: rsq:Rsph17025_3115 hypothetical protein.
Dshi_2585 protein networkhttps://string-db.org/network/398580.Dshi_2585Conserved hypothetical protein; PFAM: protein of unknown function DUF461 KEGG: rde:RD1_1682 hypothetical protein COG2847: Uncharacterized protein conserved in bacteria.
Dshi_2586 protein networkhttps://string-db.org/network/398580.Dshi_2586PFAM: HpcH/HpaI aldolase KEGG: jan:Jann_2691 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
Dshi_2587 protein networkhttps://string-db.org/network/398580.Dshi_2587Hypothetical protein; PFAM: Metallo-beta-lactamase superfamily COG1236: Predicted exonuclease of the beta-lactamase fold involved in RNA processing; related to beta-lactamases.
Dshi_2588 protein networkhttps://string-db.org/network/398580.Dshi_2588Putative esterase/lipase; PFAM: Alpha/beta hydrolase fold-3 domain protein COG0657: Esterase/lipase.
Dshi_2589 protein networkhttps://string-db.org/network/398580.Dshi_2589DNA ligase; Swiss-Prot: Q9HR35-DNA ligase PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase KEGG: rde:RD1_1817 thermostable DNA ligase.
Dshi_2590 protein networkhttps://string-db.org/network/398580.Dshi_2590PFAM: integrase family protein KEGG: rsh:Rsph17029_2267 phage integrase family protein; related to phage integrase.
Dshi_2591 protein networkhttps://string-db.org/network/398580.Dshi_2591TIGRFAM: putative transcriptional regulator, Rrf2 family PFAM: protein of unknown function UPF0074 KEGG: rde:RD1_1855 transcriptional regulator, rrf2 family, putative.
Dshi_2592 protein networkhttps://string-db.org/network/398580.Dshi_2592Swiss-Prot: P31521- 47 kDa protein; PFAM: cobalamin synthesis protein P47K COG0523: Putative GTPases (G3E family).
Dshi_2593 protein networkhttps://string-db.org/network/398580.Dshi_2593Conserved hypothetical protein; PFAM: Protein of unknown function DUF1826 KEGG: rde:RD1_1857 hypothetical protein.
Dshi_2594 protein networkhttps://string-db.org/network/398580.Dshi_2594Conserved hypothetical protein.
Dshi_2595 protein networkhttps://string-db.org/network/398580.Dshi_2595PFAM: extracellular solute-binding protein family Swiss-Prot: P76128-Putative ABC transporter periplasmic-binding protein yddS [Precursor].
Dshi_2596 protein networkhttps://string-db.org/network/398580.Dshi_2596PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: P33593-Nickel import ATP-binding protein nikD COG0444:ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ATPase [...]
Dshi_2597 protein networkhttps://string-db.org/network/398580.Dshi_2597PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: P77622-Uncharacterized ABC transporter ATP-binding protein yddO COG1124: ABC-type dipeptide/oligopeptide/nickel transport system, ATPas [...]
Dshi_2598 protein networkhttps://string-db.org/network/398580.Dshi_2598PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P75798-Glutathione transport system permease protein gsiC COG0601: ABC-type dipeptide/oligopeptide/nickel tr [...]
Dshi_2599 protein networkhttps://string-db.org/network/398580.Dshi_2599PFAM: binding-protein-dependent transport systems inner membrane component Swiss-Prot: P0AFA9-Nickel transport system permease protein nikC COG0601: ABC-type dipeptide/oligopeptide/nickel transpo [...]
Dshi_2600 protein networkhttps://string-db.org/network/398580.Dshi_2600PFAM: protein of unknown function DUF6 transmembrane KEGG: rde:RD1_1864 integral membrane protein, putative.
Dshi_2601 protein networkhttps://string-db.org/network/398580.Dshi_2601Putative transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type KEGG: rde:RD1_0249 transcriptional regulator, AraC family, putative.
Dshi_2602 protein networkhttps://string-db.org/network/398580.Dshi_2602Swiss-Prot: Q06319-Acyl-CoA dehydrogenase, short-chain specific PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain KEGG: rde:RD1_0250 acyl-CoA dehydrogenase, putati [...]
Dshi_2603 protein networkhttps://string-db.org/network/398580.Dshi_2603Oligoendopeptidase; Swiss-Prot: O31605-Oligoendopeptidase F homolog TIGRFAM: oligoendopeptidase, pepF/M3 family PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; pepF/M3 fami [...]
Dshi_2604 protein networkhttps://string-db.org/network/398580.Dshi_2604Hypothetical protein; Swiss-Prot: P64590-Inner membrane protein yhaH PFAM: protein of unknown function DUF805; similar to inner membrane protein yhaH.
Dshi_2605 protein networkhttps://string-db.org/network/398580.Dshi_2605Hypothetical protein.
Dshi_2606 protein networkhttps://string-db.org/network/398580.Dshi_2606Hypothetical protein; SMART: zinc finger CDGSH-type domain protein KEGG: rde:RD1_1658 hypothetical protein.
Dshi_2607 protein networkhttps://string-db.org/network/398580.Dshi_2607KEGG: sil:SPO0456 hypothetical protein.
Dshi_2608 protein networkhttps://string-db.org/network/398580.Dshi_2608Swiss-Prot: P49305-Putative oxidoreductase ORF334 / Q07982-Glucose--fructose oxidoreductase [Precursor] PFAM: oxidoreductase domain protein; Oxidoreductase domain KEGG: sit:TM1040_0565 oxidoreduc [...]
rpoH2 protein networkhttps://string-db.org/network/398580.Dshi_2609RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation [...]
rluD protein networkhttps://string-db.org/network/398580.Dshi_2610Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
Dshi_2611 protein networkhttps://string-db.org/network/398580.Dshi_2611Hypothetical protein.
npdA protein networkhttps://string-db.org/network/398580.Dshi_2612Swiss-Prot: P75960- NAD-dependent deacetylase (Regulatory protein SIR2 homolog) KEGG: sit:TM1040_2119 hypothetical protein COG0846: NAD-dependent protein deacetylases, SIR2 family; Belongs to the [...]
Dshi_2613 protein networkhttps://string-db.org/network/398580.Dshi_2613Swiss-Prot: O35016-Low molecular weight protein-tyrosine-phosphatase PFAM: low molecular weight phosphotyrosine protein phosphatase KEGG: sil:SPO0979 low molecular weight phosphotyrosine protein [...]
Dshi_2614 protein networkhttps://string-db.org/network/398580.Dshi_2614KEGG: sit:TM1040_0677 hypothetical protein.
Dshi_2615 protein networkhttps://string-db.org/network/398580.Dshi_2615ABC-2 type transporter; Swiss-Prot: P0AFN6-Inner membrane transport permease yadH PFAM: ABC-2 type transporter KEGG: sil:SPO0957 ABC transporter, permease protein COG1682 : ABC-type polysaccharid [...]
Dshi_2616 protein networkhttps://string-db.org/network/398580.Dshi_2616PFAM: GcrA cell cycle regulator KEGG: jan:Jann_1020 GcrA cell cycle regulator.
Dshi_2617 protein networkhttps://string-db.org/network/398580.Dshi_2617KEGG: sde:Sde_2877 hypothetical protein.
rimO protein networkhttps://string-db.org/network/398580.Dshi_2618UPF0004 protein yliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
cutA protein networkhttps://string-db.org/network/398580.Dshi_2619Swiss-Prot: P69488-Divalent-cation tolerance protein cutA PFAM: CutA1 divalent ion tolerance protein.
Dshi_2620 protein networkhttps://string-db.org/network/398580.Dshi_2620KEGG: rde:RD1_3491 hypothetical protein.
Dshi_2621 protein networkhttps://string-db.org/network/398580.Dshi_2621KEGG: sil:SPO0942 hypothetical protein.
Dshi_2622 protein networkhttps://string-db.org/network/398580.Dshi_2622KEGG: sil:SPO0941 hypothetical protein.
Dshi_2623 protein networkhttps://string-db.org/network/398580.Dshi_2623PFAM: peptidase M48 Ste24p KEGG: rde:RD1_1656 peptidase, M48 family, putative; Ste24p.
Dshi_2624 protein networkhttps://string-db.org/network/398580.Dshi_2624KEGG: rde:RD1_1657 hypothetical protein.
Dshi_2625 protein networkhttps://string-db.org/network/398580.Dshi_2625KEGG: sil:SPO0938 hypothetical protein.
Dshi_2626 protein networkhttps://string-db.org/network/398580.Dshi_2626Swiss-Prot: P55682-Uncharacterized transporter y4wD PFAM: major facilitator superfamily MFS_1.
Dshi_2627 protein networkhttps://string-db.org/network/398580.Dshi_2627Swiss-Prot: P0ACY1-Protein ydjA PFAM: nitroreductase KEGG: rsq:Rsph17025_0371 nitroreductase; related to nitroreductase.
Dshi_2628 protein networkhttps://string-db.org/network/398580.Dshi_2628Conserved hypothetical protein; PFAM: Protein of unknown function (DUF540).
Dshi_2629 protein networkhttps://string-db.org/network/398580.Dshi_2629PFAM: protein of unknown function DUF1467 KEGG: sil:SPO0933 hypothetical protein.
Dshi_2630 protein networkhttps://string-db.org/network/398580.Dshi_2630PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase Swiss-Prot: P54540-Uncharacterized protein yqjC.
Dshi_2631 protein networkhttps://string-db.org/network/398580.Dshi_2631PFAM: response regulator receiver KEGG: rde:RD1_1178 response regulator, putative.
Dshi_2632 protein networkhttps://string-db.org/network/398580.Dshi_2632Hypothetical protein.
aspS protein networkhttps://string-db.org/network/398580.Dshi_2633aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: [...]
Dshi_2634 protein networkhttps://string-db.org/network/398580.Dshi_2634Hypothetical protein.
Dshi_2635 protein networkhttps://string-db.org/network/398580.Dshi_2635PFAM: pentapeptide repeat protein.
Dshi_2636 protein networkhttps://string-db.org/network/398580.Dshi_2636Swiss-Prot: Q9Z5D7-Bacteriochlorophyll synthase 23 kDa chain (4-vinyl reductase) TIGRFAM: bacteriochlorophyll 4-vinyl reductase PFAM: 4-vinyl reductase 4VR.
Dshi_2637 protein networkhttps://string-db.org/network/398580.Dshi_2637Swiss-Prot: Q7X2C7-Anaerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase (bchE) TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase PFAM: cobala [...]
Dshi_2638 protein networkhttps://string-db.org/network/398580.Dshi_2638Hypothetical protein.
carB protein networkhttps://string-db.org/network/398580.Dshi_2639Swiss-Prot: P00968-Carbamoyl-phosphate synthase large chain TIGRFAM: carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
Dshi_2640 protein networkhttps://string-db.org/network/398580.Dshi_2640Hypothetical protein.
tdk protein networkhttps://string-db.org/network/398580.Dshi_2641Swiss-Prot: Q5LUY8-Thymidine kinase PFAM: thymidine kinase.
Dshi_2642 protein networkhttps://string-db.org/network/398580.Dshi_2642Hypothetical protein.
Dshi_2643 protein networkhttps://string-db.org/network/398580.Dshi_2643Swiss-Prot: P36234-Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
Dshi_2644 protein networkhttps://string-db.org/network/398580.Dshi_2644Swiss-Prot: P37584-Protein csaA TIGRFAM: export-related chaperone CsaA PFAM: t-RNA-binding domain protein.
proC protein networkhttps://string-db.org/network/398580.Dshi_2645Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
Dshi_2646 protein networkhttps://string-db.org/network/398580.Dshi_2646Conserved hypothetical protein; PFAM: Protein of unknown function DUF1790 COG5465: Uncharacterized conserved protein.
Dshi_2647 protein networkhttps://string-db.org/network/398580.Dshi_2647Hypothetical protein.
Dshi_2648 protein networkhttps://string-db.org/network/398580.Dshi_2648Conserved hypothetical protein; PFAM: protein of unknown function DUF526 COG2960: Uncharacterized protein conserved in bacteria.
lgt protein networkhttps://string-db.org/network/398580.Dshi_2649Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the [...]
Dshi_2650 protein networkhttps://string-db.org/network/398580.Dshi_2650Conserved hypothetical protein; PFAM: protein of unknown function DUF185 COG1565: Uncharacterized conserved protein.
Dshi_2651 protein networkhttps://string-db.org/network/398580.Dshi_2651Conserved hypothetical protein; PFAM: protein of unknown function DUF152 TIGR00726: conserved hypothetical protein TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.
Dshi_2652 protein networkhttps://string-db.org/network/398580.Dshi_2652KEGG: sil:SPO0905 hypothetical protein.
Dshi_2653 protein networkhttps://string-db.org/network/398580.Dshi_2653Swiss-Prot: P0ACJ0-Leucine-responsive regulatory protein PFAM: regulatory protein AsnC/Lrp family KEGG: rsq:Rsph17025_0257 putative transcriptional regulator, AsnC family.
trxB protein networkhttps://string-db.org/network/398580.Dshi_2654Swiss-Prot: P0A9P4-Thioredoxin reductase TIGRFAM: thioredoxin reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A.
ccpA protein networkhttps://string-db.org/network/398580.Dshi_2655Swiss-Prot: P14532-Cytochrome c551 peroxidase [Precursor] PFAM: Di-haem cytochrome c peroxidase KEGG: sil:SPO0330 cytochrome c peroxidase COG1858: Cytochrome c peroxidase.
cysC protein networkhttps://string-db.org/network/398580.Dshi_2656Putative bifunctional SAT/APS kinase: sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
Dshi_2657 protein networkhttps://string-db.org/network/398580.Dshi_2657Hypothetical protein.
Dshi_2658 protein networkhttps://string-db.org/network/398580.Dshi_2658Swiss-Prot: P19920-Carbon monoxide dehydrogenase medium chain coxM; PFAM: molybdopterin dehydrogenase FAD-binding COG1319: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM hom [...]
coxL1 protein networkhttps://string-db.org/network/398580.Dshi_2659Swiss-Prot: P19919-Carbon monoxide dehydrogenase large chain coxL TIGR02416: carbon-monoxide dehydrogenase, large subunit PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyd [...]
Dshi_2660 protein networkhttps://string-db.org/network/398580.Dshi_2660Swiss-Prot: P19921-Carbon monoxide dehydrogenase small chain coxS PFAM: ferredoxin; [2Fe-2S]-binding domain protein COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS ho [...]
Dshi_2661 protein networkhttps://string-db.org/network/398580.Dshi_2661PFAM: carbon monoxide dehydrogenase subunit G COG3427: Uncharacterized conserved protein; subunit G.
Dshi_2662 protein networkhttps://string-db.org/network/398580.Dshi_2662Hypothetical protein; PFAM: Bacterial extracellular solute-binding proteins, family 3 SMART: extracellular solute-binding protein family; similar to extracellular solute-binding protein (family 3 [...]
Dshi_2663 protein networkhttps://string-db.org/network/398580.Dshi_2663Hypothetical protein; PS51007: CYTC SSF46626: Cytochrome_c KEGG: sil:SPO1515 cytochrome c550, putative; related to cytochrome c.
Dshi_2664 protein networkhttps://string-db.org/network/398580.Dshi_2664KEGG: sil:SPO1514 hypothetical protein.
Dshi_2665 protein networkhttps://string-db.org/network/398580.Dshi_2665Conserved hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein KEGG: sil:SPO1513 hypothetical protein.
Dshi_2666 protein networkhttps://string-db.org/network/398580.Dshi_2666Hypothetical protein.
Dshi_2667 protein networkhttps://string-db.org/network/398580.Dshi_2667ABC transporter; Swiss-Prot: P0A9U1-Uncharacterized ABC transporter ATP-binding protein ybhF PFAM: ABC transporter related SMART: AAA ATPase; ATP-binding protein.
Dshi_2668 protein networkhttps://string-db.org/network/398580.Dshi_2668PFAM: ABC-2 type transporter Swiss-Prot: P0AFP9-Inner membrane transport permease ybhR KEGG: sil:SPO1510 efflux ABC transporter, permease protein; permease component.
Dshi_2669 protein networkhttps://string-db.org/network/398580.Dshi_2669Hypothetical protein.
Dshi_2670 protein networkhttps://string-db.org/network/398580.Dshi_2670PFAM: ABC transporter related SMART: AAA ATPase Swiss-Prot: Q47538-Taurine import ATP-binding protein tauB.
Dshi_2671 protein networkhttps://string-db.org/network/398580.Dshi_2671SSF53850: Periplasmic binding protein-like II COG0715: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; similar to periplasmic binding protein.
Dshi_2672 protein networkhttps://string-db.org/network/398580.Dshi_2672Hypothetical protein; PFAM: cytochrome c class I KEGG: sil:SPO1509 cytochrome c family protein; cytochrome c class I.
exaA protein networkhttps://string-db.org/network/398580.Dshi_2673Swiss-Prot: Q9Z4J7-Quinoprotein ethanol dehydrogenase [Precursor] PFAM: Pyrrolo-quinoline quinone SSF50998: Quinonprotein alcohol dehydrogenase-like KEGG: sil:SPO1508 quinoprotein ethanol dehydro [...]
Dshi_2674 protein networkhttps://string-db.org/network/398580.Dshi_2674Two component transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver KEGG: rsp:RSP_2882 two component transcriptional regulator, LuxR family Swiss-Prot: P0AF28-Nitr [...]
Dshi_2675 protein networkhttps://string-db.org/network/398580.Dshi_2675Conserved hypothetical protein; PFAM: domain of unknown function DUF1745 COG3287- Uncharacterized conserved protein.
Dshi_2676 protein networkhttps://string-db.org/network/398580.Dshi_2676Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein.
Dshi_2677 protein networkhttps://string-db.org/network/398580.Dshi_2677PFAM: lipolytic protein G-D-S-L family; G-D-S-L family.
Dshi_2678 protein networkhttps://string-db.org/network/398580.Dshi_2678ABC transporter; Swiss-Prot: P0A9T8-Uncharacterized ABC transporter ATP-binding protein ybbA PFAM: ABC transporter related SMART: AAA ATPase; ATP-binding protein.
Dshi_2679 protein networkhttps://string-db.org/network/398580.Dshi_2679Putative ABC transporter permease; PFAM: protein of unknown function DUF214 COG3127: Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component Swiss-Pr [...]
gcvP protein networkhttps://string-db.org/network/398580.Dshi_2680Decarboxylating glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofac [...]
gcvH protein networkhttps://string-db.org/network/398580.Dshi_2681Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
gcvT2 protein networkhttps://string-db.org/network/398580.Dshi_2682Swiss-Prot: P54378-Aminomethyltransferase TIGRFAM: glycine cleavage system T protein PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel.
mro protein networkhttps://string-db.org/network/398580.Dshi_2683Swiss-Prot: P05149-aldose 1-epimerase [Precursor] PFAM: Aldose 1-epimerase.
Dshi_2684 protein networkhttps://string-db.org/network/398580.Dshi_2684Swiss-Prot: Q92UG5-Putative transthyretin-like protein RB1166 TIGRFAM: Hydroxyisourate hydrolase PFAM: Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
gap3 protein networkhttps://string-db.org/network/398580.Dshi_2685Swiss-Prot: P09124-Glyceraldehyde-3-phosphate dehydrogenase 1 PFAM: glyceraldehyde 3-phosphate dehydrogenase TIGR01534 glyceraldehyde-3-phosphate dehydrogenase, type I; phosphorylating; Belongs t [...]
Dshi_2686 protein networkhttps://string-db.org/network/398580.Dshi_2686Swiss-Prot: P37903-Universal stress protein F PFAM: UspA domain protein KEGG: sit:TM1040_2126 UspA.
Dshi_2687 protein networkhttps://string-db.org/network/398580.Dshi_2687Swiss-Prot: P19567-Pseudoazurin [Precursor] TIGR02375# pseudoazurin.
appC protein networkhttps://string-db.org/network/398580.Dshi_2688Swiss-Prot: P26459-Cytochrome bd-II oxidase subunit 1 PFAM: cytochrome bd ubiquinol oxidase subunit I.
cydB protein networkhttps://string-db.org/network/398580.Dshi_2689Swiss-Prot: P0ABK2-Cytochrome d ubiquinol oxidase subunit 2 TIGR00203: cytochrome d oxidase, subunit II (cydB) PFAM: cytochrome bd ubiquinol oxidase subunit II.
Dshi_2690 protein networkhttps://string-db.org/network/398580.Dshi_2690KEGG: jan:Jann_3427 hypothetical protein.
gloB protein networkhttps://string-db.org/network/398580.Dshi_2691Putative hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
Dshi_2692 protein networkhttps://string-db.org/network/398580.Dshi_2692PFAM: protein of unknown function DUF1194.
Dshi_2693 protein networkhttps://string-db.org/network/398580.Dshi_2693Conserved hypothetical protein; PFAM: protein of unknown function DUF606 COG3238: Uncharacterized protein conserved in bacteria.
Dshi_2694 protein networkhttps://string-db.org/network/398580.Dshi_2694SSF46626: Cytochrome c superfamily PS51007: CYTC (Cytochrome c family profile).
Dshi_2695 protein networkhttps://string-db.org/network/398580.Dshi_2695Swiss-Prot: P27017-Aliphatic amidase expression-regulating protein amiC COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component SSF53822: Periplasmic binding protein- [...]
Dshi_2696 protein networkhttps://string-db.org/network/398580.Dshi_2696Inner-membrane translocator; Swiss-Prot: P0AEX7-High-affinity branched-chain amino acid transport system permease protein livH PFAM: inner-membrane translocator SMART: PBS lyase HEAT domain prote [...]
Dshi_2697 protein networkhttps://string-db.org/network/398580.Dshi_2697Swiss-Prot: P22729-High-affinity branched-chain amino acid transport system permease protein livM PFAM: inner-membrane translocator; permease protein.
Dshi_2698 protein networkhttps://string-db.org/network/398580.Dshi_2698Swiss-Prot: P0A9S7-High-affinity branched-chain amino acid transport ATP-binding protein livG PFAM: ABC transporter related SMART: AAA ATPase COG4674: Uncharacterized ABC-type transport system, A [...]
Dshi_2699 protein networkhttps://string-db.org/network/398580.Dshi_2699Swiss-Prot: P22731-High-affinity branched-chain amino acid transport ATP-binding protein livF PFAM: ABC transporter related SMART: AAA ATPase COG0410: ABC-type branched-chain amino acid transport [...]
dhlB protein networkhttps://string-db.org/network/398580.Dshi_2700Swiss-Prot: Q60099-(S)-2-haloacid dehalogenase TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) PFAM: Haloacid dehalogenase domain protein hy [...]
Dshi_2701 protein networkhttps://string-db.org/network/398580.Dshi_2701PFAM: alpha/beta hydrolase fold KEGG: rsh:Rsph17029_0927 alpha/beta hydrolase fold; alpha/beta hydrolase superfamily.
Dshi_2702 protein networkhttps://string-db.org/network/398580.Dshi_2702Swiss-Prot: P0AGF6-Threonine dehydratase catabolic tdcB PFAM: Pyridoxal-5-phosphate-dependent protein beta subunit; catabolic.
Dshi_2703 protein networkhttps://string-db.org/network/398580.Dshi_2703KEGG: rde:RD1_0908 hypothetical protein.
hemC protein networkhttps://string-db.org/network/398580.Dshi_2704Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
hemE protein networkhttps://string-db.org/network/398580.Dshi_2705Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
Dshi_2706 protein networkhttps://string-db.org/network/398580.Dshi_2706Swiss-Prot: P21503-Uncharacterized MFS-type transporter ycaD PFAM: major facilitator superfamily MFS_1.
metG protein networkhttps://string-db.org/network/398580.Dshi_2707methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
Dshi_2708 protein networkhttps://string-db.org/network/398580.Dshi_2708Sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain prote [...]
msrB1 protein networkhttps://string-db.org/network/398580.Dshi_2709Swiss-Prot: Q92RA4-Peptide methionine sulfoxide reductase msrB 1 TIGRFAM: methionine-R-sulfoxide reductase PFAM: Methionine sulfoxide reductase B.
Dshi_2710 protein networkhttps://string-db.org/network/398580.Dshi_2710Conserved hypothetical protein; PFAM: HI0933 family protein; FAD dependent oxidoreductase TIGR00275: conserved hypothetical protein SSF51905: FAD/NAD(P)-binding domain superfamily.
cobS2 protein networkhttps://string-db.org/network/398580.Dshi_2711Swiss-Prot: P29933-Aerobic cobaltochelatase subunit cobS TIGRFAM: cobalt chelatase, pCobS small subunit PFAM: ATPase associated with various cellular activities AAA_5.
Dshi_2712 protein networkhttps://string-db.org/network/398580.Dshi_2712Swiss-Prot: Q05197-Phosphatidylethanolamine N-methyltransferase [predicted] PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12.
Dshi_2713 protein networkhttps://string-db.org/network/398580.Dshi_2713Swiss-Prot: Q9ZBM2- CDP-diacylglycerol--serine O-phosphatidyltransferase TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CD [...]
psd protein networkhttps://string-db.org/network/398580.Dshi_2714Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
Dshi_2715 protein networkhttps://string-db.org/network/398580.Dshi_2715Swiss-Prot: P25888-Putative ATP-dependent RNA helicase rhlE PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein SMART: DEAD-like helicases.
Dshi_2716 protein networkhttps://string-db.org/network/398580.Dshi_2716Hypothetical protein.
Dshi_2717 protein networkhttps://string-db.org/network/398580.Dshi_2717Hypothetical protein.
Dshi_2718 protein networkhttps://string-db.org/network/398580.Dshi_2718Putative transcriptional regulator; SMART: Helix-turn-helix XRE-family like proteins; XRE family.
cobT1 protein networkhttps://string-db.org/network/398580.Dshi_2719Swiss-Prot: P29934-Aerobic cobaltochelatase subunit cobT TIGR01651: cobaltochelatase, CobT subunit PFAM: Cobalt chelatase CobT subunit SMART: von Willebrand factor type A.
Dshi_2720 protein networkhttps://string-db.org/network/398580.Dshi_2720PFAM: Endonuclease/exonuclease/phosphatase.
Dshi_2721 protein networkhttps://string-db.org/network/398580.Dshi_2721Putative metallopeptidase; PFAM: creatinase; peptidase M24.
Dshi_2722 protein networkhttps://string-db.org/network/398580.Dshi_2722Conserved hypothetical protein; PFAM: protein of unknown function DUF427 COG2343: Uncharacterized protein conserved in bacteria.
Dshi_2723 protein networkhttps://string-db.org/network/398580.Dshi_2723Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
Dshi_2724 protein networkhttps://string-db.org/network/398580.Dshi_2724Conserved hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane.
ftsY protein networkhttps://string-db.org/network/398580.Dshi_2725Hypothetical protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle [...]
Dshi_2726 protein networkhttps://string-db.org/network/398580.Dshi_2726Hypothetical protein.
xseA protein networkhttps://string-db.org/network/398580.Dshi_2727Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleo [...]
purD protein networkhttps://string-db.org/network/398580.Dshi_2728Swiss-Prot: P15640- Phosphoribosylamine--glycine ligase TIGRFAM: phosphoribosylamine--glycine ligase PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.
Dshi_2729 protein networkhttps://string-db.org/network/398580.Dshi_2729PFAM: Ion transport 2 domain protein.
Dshi_2730 protein networkhttps://string-db.org/network/398580.Dshi_2730Hypothetical protein.
Dshi_2731 protein networkhttps://string-db.org/network/398580.Dshi_2731Ferredoxin-6; Swiss-Prot: P80306-Ferredoxin-6 PFAM: ferredoxin.
Dshi_2732 protein networkhttps://string-db.org/network/398580.Dshi_2732Hypothetical protein; PFAM: nucleic acid binding OB-fold tRNA/helicase-type COG0587: DNA polymerase III, alpha subunit; associated with nucleic acid binding.
degP protein networkhttps://string-db.org/network/398580.Dshi_2733Swiss-Prot: P0C0V0-Protease do [Precursor] TIGR02037: periplasmic serine protease, Do/DeqQ family PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; Belongs to the peptidase [...]
Dshi_2734 protein networkhttps://string-db.org/network/398580.Dshi_2734Hypothetical protein.
hflC protein networkhttps://string-db.org/network/398580.Dshi_2735Protein hflC; HflC and HflK could regulate a protease.
hflK protein networkhttps://string-db.org/network/398580.Dshi_2736Protein HflK; HflC and HflK could encode or regulate a protease.
gor protein networkhttps://string-db.org/network/398580.Dshi_2737Swiss-Prot: P06715-Glutathione reductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
rpiA protein networkhttps://string-db.org/network/398580.Dshi_2738Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
Dshi_2739 protein networkhttps://string-db.org/network/398580.Dshi_2739TIGRFAM: thiamine pyrophosphokinase PFAM: Thiamin pyrophosphokinase catalytic region.
Dshi_2740 protein networkhttps://string-db.org/network/398580.Dshi_2740Hypothetical protein; PFAM: herpesvirus transcription activation factor; related to transactivator.
Dshi_2741 protein networkhttps://string-db.org/network/398580.Dshi_2741Conserved hypothetical protein; Swiss-Prot: P45566-Uncharacterized protein yhdT.
purA protein networkhttps://string-db.org/network/398580.Dshi_2742Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to t [...]
Dshi_2743 protein networkhttps://string-db.org/network/398580.Dshi_2743Putative preprotein translocase; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
pyrG protein networkhttps://string-db.org/network/398580.Dshi_2744CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the fo [...]
Dshi_2745 protein networkhttps://string-db.org/network/398580.Dshi_2745Swiss-Prot: P37757-Uncharacterized isomerase yddE TIGRFAM: phenazine biosynthesis protein PhzF family PFAM: Phenazine biosynthesis PhzC/PhzF protein.
Dshi_2746 protein networkhttps://string-db.org/network/398580.Dshi_2746KEGG: rde:RD1_1231 hypothetical protein.
Dshi_2747 protein networkhttps://string-db.org/network/398580.Dshi_2747KEGG: sil:SPO0431 hypothetical protein.
gltX1 protein networkhttps://string-db.org/network/398580.Dshi_2748glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end [...]
Dshi_2749 protein networkhttps://string-db.org/network/398580.Dshi_2749Swiss-Prot: PFAM: Di-haem cytochrome c peroxidase COG1858: Cytochrome c peroxidase Swiss-Prot: [predicted] Q51658-Methylamine utilization protein mauG [Precursor] P37197-Probable cytochrome c per [...]
Dshi_2750 protein networkhttps://string-db.org/network/398580.Dshi_2750Hypothetical protein.
Dshi_2751 protein networkhttps://string-db.org/network/398580.Dshi_2751Hypothetical protein.
Dshi_2752 protein networkhttps://string-db.org/network/398580.Dshi_2752TRAP dicarboxylate transporter; Swiss-Prot: P44542-Sialic acid-binding periplasmic protein siaP [Precursor] PFAM: TRAP dicarboxylate transporter- DctP subunit COG1638: TRAP-type C4-dicarboxylate [...]
Dshi_2753 protein networkhttps://string-db.org/network/398580.Dshi_2753Swiss-Prot: P44543-Sialic acid TRAP transporter permease protein TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease D [...]
Dshi_2754 protein networkhttps://string-db.org/network/398580.Dshi_2754Swiss-Prot: P44994-Putative TRAP transporter small permease protein HI1030 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; colocated with DctM & DctP subunits; DctQ compo [...]
Dshi_2755 protein networkhttps://string-db.org/network/398580.Dshi_2755Flavin reductase domain protein; Swiss-Prot: P54990-Nitrilotriacetate monooxygenase component B PFAM: flavin reductase domain protein FMN-binding; FMN-binding.
Dshi_2756 protein networkhttps://string-db.org/network/398580.Dshi_2756Aldo/keto reductase; Swiss-Prot: P42972-Uncharacterized oxidoreductase ycsN PFAM: aldo/keto reductase COG4989: Predicted oxidoreductase.
ssuD protein networkhttps://string-db.org/network/398580.Dshi_2757Swiss-Prot: P80645-Alkanesulfonate monooxygenase PFAM: luciferase family protein.
Dshi_2758 protein networkhttps://string-db.org/network/398580.Dshi_2758PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; GntR family.
Dshi_2759 protein networkhttps://string-db.org/network/398580.Dshi_2759Swiss-Prot: O05389-Putative oxidoreductase yrbE PFAM: oxidoreductase domain protein; Oxidoreductase domain COG0673: Predicted dehydrogenases and related proteins.
gph-2 protein networkhttps://string-db.org/network/398580.Dshi_2760Putative phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during [...]
Dshi_2761 protein networkhttps://string-db.org/network/398580.Dshi_2761Swiss-Prot: P0AFU2-Uncharacterized transporter yfbS PFAM: Citrate transporter; TrkA-C domain protein.
Dshi_2762 protein networkhttps://string-db.org/network/398580.Dshi_2762Swiss-Prot: P0A8A0-UPF0082 protein yebC TIGR01033 conserved hypothetical protein COG0217: Uncharacterized conserved protein.
Dshi_2763 protein networkhttps://string-db.org/network/398580.Dshi_2763Hypothetical protein; Swiss-Prot: P09983-Hemolysin, chromosomal PFAM: Hemolysin-type calcium-binding region; related to hemolysin.
Dshi_2764 protein networkhttps://string-db.org/network/398580.Dshi_2764Hypothetical protein.
Dshi_2765 protein networkhttps://string-db.org/network/398580.Dshi_2765Hypothetical protein.
Dshi_2766 protein networkhttps://string-db.org/network/398580.Dshi_2766Swiss-Prot: P72958-Uncharacterized transporter sll0640 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit.
Dshi_2767 protein networkhttps://string-db.org/network/398580.Dshi_2767Conserved hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane.
Dshi_2768 protein networkhttps://string-db.org/network/398580.Dshi_2768Conserved hypothetical protein; Swiss-Prot: P75429-Uncharacterized protein MG246 homolog TIGR00282# conserved hypothetical protein COG1692: Uncharacterized protein conserved in bacteria.
Dshi_2769 protein networkhttps://string-db.org/network/398580.Dshi_2769Hypothetical protein; Swiss-Prot: P0AC28-Uncharacterized protein ygfA PFAM: 5-formyltetrahydrofolate cyclo-ligase TIGR02727: 5,10-methenyltetrahydrofolate synthetase; related to 5-formyltetrahydr [...]
Dshi_2770 protein networkhttps://string-db.org/network/398580.Dshi_2770Putative magnesium transporter; Acts as a magnesium transporter.
guaD protein networkhttps://string-db.org/network/398580.Dshi_2771Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
Dshi_2772 protein networkhttps://string-db.org/network/398580.Dshi_2772Conserved hypothetical protein; Swiss-Prot: PFAM: SCP-like extracellular COG2340: Uncharacterized protein with SCP/PR1 domains; related to SCP-like extracellular protein.
Dshi_2773 protein networkhttps://string-db.org/network/398580.Dshi_2773PFAM: amidohydrolase; Amidohydrolase 3 Swiss-Prot: [inferred from homology] P95442-Hydroxydechloroatrazine ethylaminohydrolase.
Dshi_2774 protein networkhttps://string-db.org/network/398580.Dshi_2774Swiss-Prot: P0ADG4-Inositol-1-monophosphatase suhB TIGRFAM: histidinol-phosphate phosphatase, putative PFAM: inositol monophosphatase.
Dshi_2775 protein networkhttps://string-db.org/network/398580.Dshi_2775Swiss-Prot:Q52911-Uncharacterized HTH-type transcriptional regulator R00410 PFAM: helix-turn-helix domain protein COG1396: Predicted transcriptional regulators SM00530: Helix-turn-helix XRE-famil [...]
Dshi_2776 protein networkhttps://string-db.org/network/398580.Dshi_2776Swiss-Prot: P12311-Alcohol dehydrogenase PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
Dshi_2777 protein networkhttps://string-db.org/network/398580.Dshi_2777Swiss-Prot:P36771-Probable HTH-type transcriptional regulator lrhA PFAM: regulatory protein LysR; LysR substrate-binding; LysR family.
Dshi_2778 protein networkhttps://string-db.org/network/398580.Dshi_2778Conserved hypothetical protein.
Dshi_2779 protein networkhttps://string-db.org/network/398580.Dshi_2779Conserved hypothetical protein; Swiss-Prot: P0AAC4-Inner membrane protein ybhL PFAM: protein of unknown function UPF0005; Belongs to the BI1 family.
Dshi_2780 protein networkhttps://string-db.org/network/398580.Dshi_2780Hypothetical protein.
rpmG protein networkhttps://string-db.org/network/398580.Dshi_2781Swiss-Prot: Q6N554-50S ribosomal protein L33 PFAM: ribosomal protein L33 TIGR01023 ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.
Dshi_2782 protein networkhttps://string-db.org/network/398580.Dshi_2782Hypothetical protein.
Dshi_2783 protein networkhttps://string-db.org/network/398580.Dshi_2783Hypothetical protein; Swiss-Prot: P75820-N-acetylmuramoyl-L-alanine amidase amiD [Precursor] PFAM: N-acetylmuramoyl-L-alanine amidase family 2; similar to N-acetylmuramoyl-L-alanine amidase.
Dshi_2784 protein networkhttps://string-db.org/network/398580.Dshi_2784Hypothetical protein.
gatA protein networkhttps://string-db.org/network/398580.Dshi_2785glutamyl-tRNA(Gln) amidotransferase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthe [...]
gatC protein networkhttps://string-db.org/network/398580.Dshi_2786glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in [...]
Dshi_2787 protein networkhttps://string-db.org/network/398580.Dshi_2787Hypothetical protein.
Dshi_2788 protein networkhttps://string-db.org/network/398580.Dshi_2788Swiss-Prot:Q98M91- UPF0173 metal-dependent hydrolase PFAM:beta-lactamase domain protein COG2220: Predicted Zn-dependent hydrolases of the beta-lactamase fold; Belongs to the UPF0173 family.
tadA protein networkhttps://string-db.org/network/398580.Dshi_2789Hypothetical protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
Dshi_2790 protein networkhttps://string-db.org/network/398580.Dshi_2790Swiss-Prot: Q4UL59-Uncharacterized RNA pseudouridine synthase RF_0863 TIGR00093: pseudouridine synthase family COG1187:16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate sy [...]
Dshi_2791 protein networkhttps://string-db.org/network/398580.Dshi_2791KEGG: sil:SPO2985 hypothetical protein.
Dshi_2792 protein networkhttps://string-db.org/network/398580.Dshi_2792Hypothetical protein; PFAM: toxic anion resistance family protein Swiss-Prot: Q2YY12- TelA-like protein SAB1262 COG3853: Uncharacterized protein involved in tellurite resistance; related to toxic [...]
Dshi_2793 protein networkhttps://string-db.org/network/398580.Dshi_2793Hypothetical protein.
Dshi_2794 protein networkhttps://string-db.org/network/398580.Dshi_2794Conserved hypothetical protein.
Dshi_2795 protein networkhttps://string-db.org/network/398580.Dshi_2795Conserved hypothetical protein.
Dshi_2796 protein networkhttps://string-db.org/network/398580.Dshi_2796PFAM: heat shock protein Hsp20 SSF49764: HSP20-like chaperones superfamily; Hsp20; Belongs to the small heat shock protein (HSP20) family.
Dshi_2797 protein networkhttps://string-db.org/network/398580.Dshi_2797Carbohydrate kinase; PFAM: PfkB domain protein COG0524: Sugar kinases, ribokinase family PTHR10584: sugar kinase related; pfkB family.
dtd protein networkhttps://string-db.org/network/398580.Dshi_2798D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischar [...]
fccB protein networkhttps://string-db.org/network/398580.Dshi_2799Swiss-Prot: Q06530- Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [Precursor] PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrog [...]
Dshi_2800 protein networkhttps://string-db.org/network/398580.Dshi_2800Swiss-Prot: P00082-Cytochrome c2 PFAM: cytochrome c class I.
Dshi_2801 protein networkhttps://string-db.org/network/398580.Dshi_2801Swiss-Prot: P00081-Cytochrome c2 PFAM: cytochrome c class I.
Dshi_2802 protein networkhttps://string-db.org/network/398580.Dshi_2802Oxidoreductase; Swiss-Prot: PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding.
Dshi_2803 protein networkhttps://string-db.org/network/398580.Dshi_2803Putative 5'-nucleotidase; PFAM: metallophosphoesterase; 5-Nucleotidase domain protein Swiss-Prot:P07024-Protein ushA [Precursor] COG0737: 5-nucleotidase/2,3-cyclic phosphodiesterase and related e [...]
soxA1 protein networkhttps://string-db.org/network/398580.Dshi_2804Swiss-Prot: Q939U1-Diheme cytochrome c GENE3D / SSF46626: Cytochrome c, monohaem PS51008: Multihaem cytochrome.
Dshi_2805 protein networkhttps://string-db.org/network/398580.Dshi_2805PFAM: Sulphur oxidation protein SoxZ Swiss-Prot: Q939U2- SoxZ [predicted]; soxZ.
Dshi_2806 protein networkhttps://string-db.org/network/398580.Dshi_2806PIRSF010312: sulfur oxidation protein SoxY [Validated] Swiss-Prot: A3X8I0-Sulfur oxidation protein SoxY [predicted]; soxY.
Dshi_2807 protein networkhttps://string-db.org/network/398580.Dshi_2807PFAM: cytochrome c SSF46626 / PS51007 / G3DSA:1.10.760.10: Cytochrome c, monohaem Swiss-Prot: A3W521- Monoheme cytochrome c SoxX [predicted]; monohaem.
Dshi_2808 protein networkhttps://string-db.org/network/398580.Dshi_2808SSF52833: Thioredoxin-like superfamily COG2143: Thioredoxin-related protein Swiss-Prot: Q16A50-Thioredoxin SoxW [predicted].
Dshi_2809 protein networkhttps://string-db.org/network/398580.Dshi_2809PFAM: cytochrome c biogenesis protein transmembrane region COG0785: Cytochrome c biogenesis protein; transmembrane region.
Dshi_2810 protein networkhttps://string-db.org/network/398580.Dshi_2810Hypothetical protein.
Dshi_2811 protein networkhttps://string-db.org/network/398580.Dshi_2811Conserved hypothetical protein; PFAM: protein of unknown function DUF336.
Dshi_2812 protein networkhttps://string-db.org/network/398580.Dshi_2812PFAM: regulatory protein ArsR; ArsR family.
Dshi_2813 protein networkhttps://string-db.org/network/398580.Dshi_2813Conserved hypothetical protein; PFAM: protein of unknown function DUF395 YeeE/YedE.
Dshi_2814 protein networkhttps://string-db.org/network/398580.Dshi_2814Conserved hypothetical protein; TIGRFAM: diguanylate cyclase (GGDEF) domain PFAM: GGDEF domain containing protein.
Dshi_2815 protein networkhttps://string-db.org/network/398580.Dshi_2815Conserved hypothetical protein; PFAM: Heme NO binding domain protein.
Dshi_2816 protein networkhttps://string-db.org/network/398580.Dshi_2816Conserved hypothetical protein.
Dshi_2817 protein networkhttps://string-db.org/network/398580.Dshi_2817Swiss-Prot: PFAM: trimethylamine methyltransferase PIRSF037567: trimethylamine methyltransferase, MttB type; Belongs to the trimethylamine methyltransferase family.
Dshi_2818 protein networkhttps://string-db.org/network/398580.Dshi_2818HAD-like hydrolase; Swiss-Prot: P32662-Phosphoglycolate phosphatase TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1 PFAM: Haloacid [...]
Dshi_2819 protein networkhttps://string-db.org/network/398580.Dshi_2819KEGG: sil:SPO2752 hypothetical protein.
Dshi_2820 protein networkhttps://string-db.org/network/398580.Dshi_2820Swiss-Prot: Q9A5I5-Response regulator pleD (part of a signal transduction pathway controlling cell differentiation in the swarmer-to-stalked cell transition) TIGR00254: diguanylate cyclase (GGDEF [...]
Dshi_2821 protein networkhttps://string-db.org/network/398580.Dshi_2821Conserved hypothetical protein; PFAM: protein of unknown function DUF983 COG5349: Uncharacterized protein conserved in bacteria.
Dshi_2822 protein networkhttps://string-db.org/network/398580.Dshi_2822Swiss-Prot: PFAM: NUDIX hydrolase.
Dshi_2823 protein networkhttps://string-db.org/network/398580.Dshi_2823PFAM: aldo/keto reductase IPR001395: Aldo/keto reductase.
Dshi_2824 protein networkhttps://string-db.org/network/398580.Dshi_2824Conserved hypothetical protein.
Dshi_2825 protein networkhttps://string-db.org/network/398580.Dshi_2825Hypothetical protein; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding COG1250: 3-hydroxyacyl-CoA dehydrogenase; related to 3-hydroxyacyl-CoA dehydrogenase.
Dshi_2826 protein networkhttps://string-db.org/network/398580.Dshi_2826KEGG: rde:RD1_2519 hypothetical protein COG4544: Uncharacterized conserved protein.
Dshi_2827 protein networkhttps://string-db.org/network/398580.Dshi_2827Conserved hypothetical protein; Swiss-Prot: P0A8X2-Protein yceI [Precursor] PFAM: YceI family protein COG2353: Uncharacterized conserved protein; similar to protein yceI [Precursor]; Belongs to t [...]
Dshi_2828 protein networkhttps://string-db.org/network/398580.Dshi_2828Conserved hypothetical protein; Swiss-Prot: TIGRFAM: Mg chelatase, subunit ChlI PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5 SMART: AAA ATPase; [...]
gshB protein networkhttps://string-db.org/network/398580.Dshi_2829Swiss-Prot: P04425-Glutathione synthetase TIGRFAM: glutathione synthetase PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; Belongs t [...]
Dshi_2830 protein networkhttps://string-db.org/network/398580.Dshi_2830TIGR00252 conserved hypothetical protein PFAM: protein of unknown function UPF0102; Belongs to the UPF0102 family.
rsmI protein networkhttps://string-db.org/network/398580.Dshi_2831Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
Dshi_2832 protein networkhttps://string-db.org/network/398580.Dshi_2832SSF53822: Periplasmic binding protein-like I superfamily PS51257: Prokaryotic membrane lipoprotein lipid attachment site profile.
glnD protein networkhttps://string-db.org/network/398580.Dshi_2833[Protein-PII] uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses [...]
murJ protein networkhttps://string-db.org/network/398580.Dshi_2834Putative virulence factor; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
Dshi_2835 protein networkhttps://string-db.org/network/398580.Dshi_2835Conserved hypothetical protein; PFAM: Rhomboid family protein KEGG: sit:TM1040_0444 rhomboid-like protein COG0705: Uncharacterized membrane protein (homolog of Drosophila rhomboid); related to rh [...]
trpS protein networkhttps://string-db.org/network/398580.Dshi_2836tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
Dshi_2837 protein networkhttps://string-db.org/network/398580.Dshi_2837Aminotransferase; Swiss-Prot: P0AB80-Branched-chain-amino-acid aminotransferase PFAM: aminotransferase class IV; class IV.
Dshi_2838 protein networkhttps://string-db.org/network/398580.Dshi_2838Conserved hypothetical protein; PFAM: UspA domain protein COG0589: Universal stress protein UspA and related nucleotide-binding proteins; related to universal stress protein.
Dshi_2839 protein networkhttps://string-db.org/network/398580.Dshi_2839Conserved hypothetical protein; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU Swiss-Prot: P33179-Nitrogen fixation protein nifU [Fragment] (inferred from homology); related [...]
Dshi_2840 protein networkhttps://string-db.org/network/398580.Dshi_2840PFAM: peptidase M22 glycoprotease; glycoprotease.
Dshi_2841 protein networkhttps://string-db.org/network/398580.Dshi_2841Putative ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
Dshi_2842 protein networkhttps://string-db.org/network/398580.Dshi_2842PFAM: basic membrane lipoprotein SSF53822: Periplasmic binding protein-like I superfamily.
rbsA2 protein networkhttps://string-db.org/network/398580.Dshi_2843Swiss-Prot: P04983-Ribose import ATP-binding protein rbsA.
Dshi_2844 protein networkhttps://string-db.org/network/398580.Dshi_2844Integral inner-membrane protein; Swiss-Prot: P0AGI1-Ribose transport system permease protein rbsC PFAM: inner-membrane translocator; similar to ribose transport system permease protein.
Dshi_2845 protein networkhttps://string-db.org/network/398580.Dshi_2845Conserved hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA) Swiss-Prot: P75693-Uncharacterized membrane protein yahN; related to LysE type translocator.
Dshi_2846 protein networkhttps://string-db.org/network/398580.Dshi_2846PFAM: inner-membrane translocator COG1079: Uncharacterized ABC-type transport system, permease component.
Dshi_2847 protein networkhttps://string-db.org/network/398580.Dshi_2847Conserved hypothetical protein; Swiss-Prot: PFAM: protein of unknown function DUF81 KEGG: sil:SPO0375 membrane protein.
Dshi_2848 protein networkhttps://string-db.org/network/398580.Dshi_2848TIGR02186# conserved hypothetical protein.
Dshi_2849 protein networkhttps://string-db.org/network/398580.Dshi_2849Short-chain dehydrogenase/reductase; Swiss-Prot: Q9KWN1-Serine 3-dehydrogenase PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR COG4221: Short-chain alcohol dehy [...]
Dshi_2850 protein networkhttps://string-db.org/network/398580.Dshi_2850SMART 00382: AAA - ATPases associated with a variety of cellular activities; AAA family.
Dshi_2851 protein networkhttps://string-db.org/network/398580.Dshi_2851Swiss-Prot: P33883-Autoinducer synthesis protein lasI PFAM: autoinducer synthesis protein.
Dshi_2852 protein networkhttps://string-db.org/network/398580.Dshi_2852Ibu, PFAM: regulatory protein LuxR; Autoinducer-binding domain protein KEGG: sil:SPO0371 autoinducer-binding transcriptional regulator LuxR, Autoinducer binding domain pfam03472, HTH-LuxR domain [...]
Dshi_2853 protein networkhttps://string-db.org/network/398580.Dshi_2853Alcohol dehydrogenase; TIGRFAM: crotonyl-CoA reductase PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein Swiss-Prot: P42328-Alcohol dehydrogenase [...]
Dshi_2854 protein networkhttps://string-db.org/network/398580.Dshi_2854Swiss-Prot: P0A7A7-Glycerol-3-phosphate acyltransferase PFAM: phospholipid/glycerol acyltransferase.
mutB protein networkhttps://string-db.org/network/398580.Dshi_2855Swiss-Prot: PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein TIGR00640: methylmalonyl-CoA mutase C-terminal domain TIGR00641: methylmalonyl-CoA mutase N-terminal domain.
Dshi_2856 protein networkhttps://string-db.org/network/398580.Dshi_2856Conserved hypothetical protein.
Dshi_2857 protein networkhttps://string-db.org/network/398580.Dshi_2857Hypothetical protein.
deoD protein networkhttps://string-db.org/network/398580.Dshi_2858Swiss-Prot: P0ABP8-Purine nucleoside phosphorylase deoD-type TIGRFAM: purine nucleoside phosphorylase PFAM: purine or other phosphorylase family 1.
Dshi_2859 protein networkhttps://string-db.org/network/398580.Dshi_2859Hypothetical protein.
Dshi_2860 protein networkhttps://string-db.org/network/398580.Dshi_2860Hypothetical protein.
sdhB protein networkhttps://string-db.org/network/398580.Dshi_2861Swiss-Prot: P07014-Succinate dehydrogenase iron-sulfur subunit TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein KEGG: rde:RD1_1630 succinate dehydrogenase, iron-sulfur [...]
Dshi_2862 protein networkhttps://string-db.org/network/398580.Dshi_2862Hypothetical protein.
Dshi_2863 protein networkhttps://string-db.org/network/398580.Dshi_2863Hypothetical protein.
Dshi_2864 protein networkhttps://string-db.org/network/398580.Dshi_2864Hypothetical protein.
sdhA protein networkhttps://string-db.org/network/398580.Dshi_2865SWISSPROT P0AC41: Succinate dehydrogenase flavoprotein subunit; TIGRFAM: TIGR01812 succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; TIGR018 [...]
Dshi_2866 protein networkhttps://string-db.org/network/398580.Dshi_2866Hypothetical protein; TIGRFAM: TIGR02968 succinate dehydrogenase, hydrophobic membrane anchor protein; COG: COG2142 - Succinate dehydrogenase, hydrophobic anchor subunit; similar to succinate deh [...]
Dshi_2867 protein networkhttps://string-db.org/network/398580.Dshi_2867SWISSPROT P69054: Succinate dehydrogenase cytochrome b556 subunit sdhC; TIGRFAM: TIGR02970 succinate dehydrogenase, cytochrome b556 subunit; COG: COG2009 - Succinate dehydrogenase/fumarate reduct [...]
Dshi_2868 protein networkhttps://string-db.org/network/398580.Dshi_2868SWISSPROT Q3J2P2: Cytochrome c-554 [Precursor] cycF; COG: COG3909 - Cytochrome c556; PFAM: PF01322; PIR: PIRSF000027; PRINTS: PR00608; PROSITE: PS51009; Gene3D: G3DSA:1.20.120.10.
Dshi_2869 protein networkhttps://string-db.org/network/398580.Dshi_2869SWISSPROT P0A388: Alcohol dehydrogenase cytochrome c subunit [Precursor] adhB; COG: COG2010 - Cytochrome c, mono- and diheme variants; PROSITE: PS51007; SUPERFAMILY: SSF46626.
Dshi_2870 protein networkhttps://string-db.org/network/398580.Dshi_2870Hypothetical protein.
Dshi_2871 protein networkhttps://string-db.org/network/398580.Dshi_2871Putative thiol ester dehydrase/isomerase; COG: COG2030 - Acyl dehydratase; PIR: PIRSF021494; SUPERFAMILY: SSF54637.
Dshi_2872 protein networkhttps://string-db.org/network/398580.Dshi_2872COG: COG5515 - Uncharacterized conserved small protein.
Dshi_2873 protein networkhttps://string-db.org/network/398580.Dshi_2873Putative NnrU protein; COG: COG4094 - Predicted membrane protein; PFAM: PF07298 - NnrU protein.
Dshi_2874 protein networkhttps://string-db.org/network/398580.Dshi_2874PIR: PIRSF015582 - citrate lyase, beta subunit; PFAM: PF03328; COG: COG2301 - Citrate lyase beta subunit; Gene3D: G3DSA:3.20.20.60; Belongs to the HpcH/HpaI aldolase family.
Dshi_2875 protein networkhttps://string-db.org/network/398580.Dshi_2875Conserved hypothetical protein.
mdh protein networkhttps://string-db.org/network/398580.Dshi_2876Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
Dshi_2877 protein networkhttps://string-db.org/network/398580.Dshi_2877Conserved hypothetical protein.
sucC1 protein networkhttps://string-db.org/network/398580.Dshi_2878succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus repres [...]
Dshi_2879 protein networkhttps://string-db.org/network/398580.Dshi_2879Hypothetical protein.
Dshi_2880 protein networkhttps://string-db.org/network/398580.Dshi_2880Hypothetical protein.
Dshi_2881 protein networkhttps://string-db.org/network/398580.Dshi_2881Hypothetical protein.
sucD1 protein networkhttps://string-db.org/network/398580.Dshi_2882succinyl-CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP an [...]
sucA protein networkhttps://string-db.org/network/398580.Dshi_2883SWISSPROT P0AFG3: 2-oxoglutarate dehydrogenase E1 component; PIR: PIRSF000157 - 2-oxoglutarate dehydrogenase, E1 component; TIGRFAM: TIGR00239 2-oxoglutarate dehydrogenase, E1 component; COG: COG [...]
sucB protein networkhttps://string-db.org/network/398580.Dshi_2884Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step [...]
Dshi_2885 protein networkhttps://string-db.org/network/398580.Dshi_2885Hypothetical protein; COG: COG3686 - Predicted membrane protein.
lpd protein networkhttps://string-db.org/network/398580.Dshi_2886SWISSPROT P14218: Dihydrolipoyl dehydrogenase; TIGRFAM: TIGR01350 dihydrolipoamide dehydrogenase; COG: COG1249 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) [...]
gabD protein networkhttps://string-db.org/network/398580.Dshi_2887NADP(+) dependentsuccinate-semialdehyde dehydrogenase; TIGRFAM: TIGR01780 succinic semialdehyde dehydrogenase; COG: COG1012 - NAD-dependent aldehyde dehydrogenases; PFAM: PF00171; PROSITE: PS0007 [...]
Dshi_2888 protein networkhttps://string-db.org/network/398580.Dshi_2888Putative alpha/beta hydrolase; SUPERFAMILY: SSF53474; Gene3D: G3DSA:3.40.50.1820; COG: COG0657 - Esterase/lipase.
Dshi_2889 protein networkhttps://string-db.org/network/398580.Dshi_2889COG: COG3191 - L-aminopeptidase/D-esterase.
Dshi_2890 protein networkhttps://string-db.org/network/398580.Dshi_2890Hypothetical protein.
Dshi_2891 protein networkhttps://string-db.org/network/398580.Dshi_2891Short chain dehydrogenase/reductase; COG: COG1028 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); PFAM: PF00106; PRINTS: PR00080, PR00081.
Dshi_2892 protein networkhttps://string-db.org/network/398580.Dshi_2892SWISSPROT P0C054: Small heat shock protein ibpA; PFAM: PF00011; PROSITE: PS01031; SUPERFAMILY: SSF49764; COG: COG0071 - Molecular chaperone (small heat shock protein); Belongs to the small heat s [...]
Dshi_2893 protein networkhttps://string-db.org/network/398580.Dshi_2893Hypothetical protein; COG: COG3591 - V8-like Glu-specific endopeptidase; PFAM: PF00089; SMART: SM00020; PROSITE: PS00134, PS50240; PRINTS: PR00722; similar to serine protease.
Dshi_2894 protein networkhttps://string-db.org/network/398580.Dshi_2894Hypothetical protein; COG: COG0247 - Fe-S oxidoreductase; PFAM: PF00037, PF02754; PROSITE: PS00198; SWISSPROT P52074: Glycolate oxidase iron-sulfur subunit; similar to glycolate oxidase iron-sulf [...]
Dshi_2895 protein networkhttps://string-db.org/network/398580.Dshi_2895Hypothetical protein; COG: COG0277 - FAD/FMN-containing dehydrogenases; PFAM: PF01565; similar to glycolate oxidase subunit glcE.
Dshi_2896 protein networkhttps://string-db.org/network/398580.Dshi_2896FAD-binding oxidoreductase/transferase; TIGRFAM: TIGR00387 glycolate oxidase, subunit GlcD; COG: COG0277 - FAD/FMN-containing dehydrogenases; PFAM: PF01565, PF02913; SWISSPROT P0AEP9: Glycolate o [...]
Dshi_2897 protein networkhttps://string-db.org/network/398580.Dshi_2897SWISSPROT P23461: Protein pucD; associated with puc operon, related to protein pucD.
pucC1 protein networkhttps://string-db.org/network/398580.Dshi_2898pucC; SWISSPROT P23462: Protein pucC; PFAM: PF03209.
Dshi_2899 protein networkhttps://string-db.org/network/398580.Dshi_2899Putative light-harvesting protein B-800/850 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
pucB protein networkhttps://string-db.org/network/398580.Dshi_2900Light-harvesting protein B-800/850 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
Dshi_2901 protein networkhttps://string-db.org/network/398580.Dshi_2901Conserved hypothetical protein.
Dshi_2902 protein networkhttps://string-db.org/network/398580.Dshi_2902Conserved hypothetical protein.
Dshi_2903 protein networkhttps://string-db.org/network/398580.Dshi_2903Conserved hypothetical protein.
Dshi_2904 protein networkhttps://string-db.org/network/398580.Dshi_2904Conserved hypothetical protein; TIGRFAM: TIGR02226.
Dshi_2905 protein networkhttps://string-db.org/network/398580.Dshi_2905Conserved hypothetical protein; PFAM: PF01882; COG: COG1721 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain); related to DUF58.
Dshi_2906 protein networkhttps://string-db.org/network/398580.Dshi_2906Hypothetical protein; COG: COG0714 - MoxR-like ATPases; PFAM: PF07726; SMART: SM00382; related to AAA ATPase.
Dshi_2907 protein networkhttps://string-db.org/network/398580.Dshi_2907COG: COG3816 - Uncharacterized protein conserved in bacteria; PFAM: PF06938 - Protein of unknown function (DUF1285).
rluE protein networkhttps://string-db.org/network/398580.Dshi_2908SWISSPROT P75966: Ribosomal large subunit pseudouridine synthase E; TIGRFAM: TIGR00093 pseudouridine synthase family; COG: COG1187 - 16S rRNA uridine-516 pseudouridylate synthase and related pseu [...]
polA protein networkhttps://string-db.org/network/398580.Dshi_2909DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
Dshi_2910 protein networkhttps://string-db.org/network/398580.Dshi_2910TIGRFAM: TIGR01065 channel protein, hemolysin III family; COG: COG1272 - Predicted membrane protein, hemolysin III homolog; PFAM: PF03006; related to haemolysin-III family protein.
Dshi_2911 protein networkhttps://string-db.org/network/398580.Dshi_2911TIGRFAM: TIGR02117 conserved hypothetical protein.
Dshi_2912 protein networkhttps://string-db.org/network/398580.Dshi_2912COG: COG4391 - Uncharacterized protein conserved in bacteria.
Dshi_2913 protein networkhttps://string-db.org/network/398580.Dshi_2913SWISSPROT P36879: Uncharacterized ABC transporter ATP-binding protein yadG; PFAM: PF00005; PROSITE: PS00211, PS50893.
Dshi_2914 protein networkhttps://string-db.org/network/398580.Dshi_2914Putative alpha/beta hydrolase; COG: COG1075 - Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold; PROSITE: PS51257; SUPERFAMILY: SSF53474.
Dshi_2915 protein networkhttps://string-db.org/network/398580.Dshi_2915Hypothetical protein; SWISSPROT Q58549: ADP-ribose pyrophosphatase; COG: COG1051 - ADP-ribose pyrophosphatase PFAM: PF00293; PRINTS: PR00502; Gene3D: G3DSA:3.90.79.10; related to ADP-ribose pyrop [...]
Dshi_2916 protein networkhttps://string-db.org/network/398580.Dshi_2916Hypothetical protein; PFAM: PF00892 - integral membrane protein DUF6; COG: COG5006 - Predicted permease, DMT superfamily; similar to integral membrane protein DUF6.
Dshi_2917 protein networkhttps://string-db.org/network/398580.Dshi_2917Hypothetical protein; TIGRFAM: TIGR02318 phosphonate metabolism protein PhnM; COG: COG3454 - Metal-dependent hydrolase involved in phosphonate metabolism; PFAM: PF01979 - Amidohydrolase family; s [...]
Dshi_2918 protein networkhttps://string-db.org/network/398580.Dshi_2918Hypothetical protein; PFAM: Acetyltransferase (GNAT) family; PROSITE: PS51186; COG: COG3153 - Predicted acetyltransferase; similar to acetyltransferase (GNAT).
groL protein networkhttps://string-db.org/network/398580.Dshi_291960 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
groS protein networkhttps://string-db.org/network/398580.Dshi_2920Chaperonin 10 Kd subunit; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
Dshi_2922 protein networkhttps://string-db.org/network/398580.Dshi_2922COG: COG5482 - Uncharacterized conserved protein.
Dshi_2923 protein networkhttps://string-db.org/network/398580.Dshi_2923Hypothetical protein; PFAM: PF07694; related to 5TMR of 5TMR-LYT.
ppaC protein networkhttps://string-db.org/network/398580.Dshi_2924Pyrophosphate phospho-hydrolase; SWISSPROT Q9RRB7: Probable manganese-dependent inorganic pyrophosphatase; COG: COG1227 - Inorganic pyrophosphatase/exopolyphosphatase; PFAM: PF01368, PF02833.
Dshi_2925 protein networkhttps://string-db.org/network/398580.Dshi_2925TIGRFAM: TIGR01459 HAD-superfamily class IIA hydrolase, TIGR01459 TIGR01460 Haloacid Dehalogenase Superfamily Class (subfamily) IIA; COG: COG0647 - Predicted sugar phosphatases of the HAD superfa [...]
Dshi_2926 protein networkhttps://string-db.org/network/398580.Dshi_2926Putative MaoC-like dehydratase; SWISSPROT P77455: Protein maoC; PFAM: PF01575; COG: COG2030 - Acyl dehydratase.
ribF protein networkhttps://string-db.org/network/398580.Dshi_2927SWISSPROT P0AG40: Riboflavin biosynthesis protein; TIGRFAM: TIGR00083 riboflavin kinase/FMN adenylyltransferase; COG: COG0196 - FAD synthase; PFAM: PF06574; Gene3D: G3DSA:3.40.50.620; Belongs to [...]
Dshi_2928 protein networkhttps://string-db.org/network/398580.Dshi_2928Conserved hypothetical protein UPF0153 family; COG: COG2983 - Uncharacterized conserved protein; PFAM: PF03692 - Uncharacterized protein family (UPF0153); Belongs to the UPF0260 family.
Dshi_2929 protein networkhttps://string-db.org/network/398580.Dshi_2929Putative alpha/beta hydrolase; COG: COG0596 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); PFAM: PF00561; PRINTS: PR00412, PR00111; PROSITE: PS00120.
Dshi_2930 protein networkhttps://string-db.org/network/398580.Dshi_2930COG: COG3917 - 2-hydroxychromene-2-carboxylate isomerase; SWISSPROT Q51948: 2-hydroxychromene-2-carboxylate isomerase nahD.
prs protein networkhttps://string-db.org/network/398580.Dshi_2931Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hy [...]
Dshi_2932 protein networkhttps://string-db.org/network/398580.Dshi_2932Conserved hypothetical protein; Associated with ATP synthase gene cluster.
atpC1 protein networkhttps://string-db.org/network/398580.Dshi_2933ATP synhtase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
atpD2 protein networkhttps://string-db.org/network/398580.Dshi_2934ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alp [...]
atpG2 protein networkhttps://string-db.org/network/398580.Dshi_2935ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of [...]
atpA1 protein networkhttps://string-db.org/network/398580.Dshi_2936ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family [...]
atpH protein networkhttps://string-db.org/network/398580.Dshi_2937ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extrame [...]
Dshi_2938 protein networkhttps://string-db.org/network/398580.Dshi_2938Conserved hypohtetical protein.
clpA protein networkhttps://string-db.org/network/398580.Dshi_2939SWISSPROT P0ABH9: ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: TIGR02639 ATP-dependent Clp protease ATP-binding subunit clpA; COG: COG0542 - ATPases with chaperone activity, ATP-bindi [...]
Dshi_2940 protein networkhttps://string-db.org/network/398580.Dshi_2940Conserved hypothetical protein; COG: COG1360 - Flagellar motor protein; PFAM: PF00691; PROSITE: PS51123; related to OmpA.
Dshi_2941 protein networkhttps://string-db.org/network/398580.Dshi_2941Conserved hypothetical protein.
Dshi_2942 protein networkhttps://string-db.org/network/398580.Dshi_2942Putative cation transport protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; [...]
Dshi_2943 protein networkhttps://string-db.org/network/398580.Dshi_2943Conserved hypothetical protein.
Dshi_2944 protein networkhttps://string-db.org/network/398580.Dshi_2944COG: COG3921 - Uncharacterized protein conserved in bacteria; PFAM: PF06904; related to extensin.
tyrC protein networkhttps://string-db.org/network/398580.Dshi_2945Arogenate dehydrogenase; SWISSPROT Q04983: Protein tyrC; COG: COG0287 - Prephenate dehydrogenase; PFAM: PF02153; PROSITE: PS51176.
hisC protein networkhttps://string-db.org/network/398580.Dshi_2946TIGRFAM: TIGR01141 histidinol-phosphate aminotransferase; COG: COG0079 - Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; SWISSPROT Q3J445: histidinol-phosphate amin [...]
hss protein networkhttps://string-db.org/network/398580.Dshi_2947SWISSPROT O32323: Homospermidine synthase; PFAM: PF06408 - Homospermidine synthase; COG: COG5310 - Homospermidine synthase.
rpsD protein networkhttps://string-db.org/network/398580.Dshi_294830S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
Dshi_2949 protein networkhttps://string-db.org/network/398580.Dshi_2949Putative Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for D [...]
Dshi_2950 protein networkhttps://string-db.org/network/398580.Dshi_2950PFAM: PF07370 - Protein of unknown function (DUF1489); COG: COG5458 - Uncharacterized conserved protein.
Dshi_2951 protein networkhttps://string-db.org/network/398580.Dshi_2951Hypothetical protein; COG: COG0031 - Cysteine synthase; PFAM: PF00291; PROSITE: PS00216; similar to cysteine synthase.
panC protein networkhttps://string-db.org/network/398580.Dshi_2952Pantothenate synthase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
Dshi_2953 protein networkhttps://string-db.org/network/398580.Dshi_2953Putative ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because [...]
Dshi_2954 protein networkhttps://string-db.org/network/398580.Dshi_2954Hypothetical protein; COG: COG3705 - ATP phosphoribosyltransferase involved in histidine biosynthesis; PFAM: PF00587; PANTHER: Histidyl-tRNA-synthetase; related to tRNA synthetase.
hisS protein networkhttps://string-db.org/network/398580.Dshi_2955TIGRFAM: TIGR00442 histidyl-tRNA synthetase; COG: COG0124 - Histidyl-tRNA synthetase; PFAM: PF00587, PF03129; PROSITE: PS50862.
Dshi_2956 protein networkhttps://string-db.org/network/398580.Dshi_2956Hypothetical protein; PFAM: PF04102- SlyX; similar to slyX.
dnaE2 protein networkhttps://string-db.org/network/398580.Dshi_2957TIGRFAM: TIGR00594 DNA-directed DNA polymerase III (polc); COG: COG0587 - DNA polymerase III, alpha subunit; PFAM: PF02811, PF01336, PF07733.
xghB protein networkhttps://string-db.org/network/398580.Dshi_2958Putative xanthine dehydrogenase; PFAM: PF00111, PF00941, PF01799, PF03450; TIGRFAM: TIGR02963 xanthine dehydrogenase, small subunit; COG: COG4630 - Xanthine dehydrogenase, iron-sulfur cluster and [...]
xdhA protein networkhttps://string-db.org/network/398580.Dshi_2959SWISSPROT Q46799: Xanthine dehydrogenase molybdenum-binding subunit; TIGRFAM: TIGR02965 xanthine dehydrogenase, molybdopterin binding subunit; COG: COG4631 - Xanthine dehydrogenase, molybdopterin [...]
xdhC protein networkhttps://string-db.org/network/398580.Dshi_2960TIGRFAM: TIGR02964 xanthine dehydrogenase accessory protein XdhC; PFAM: PF02625; COG: COG1975 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
Dshi_2961 protein networkhttps://string-db.org/network/398580.Dshi_2961ABC transporter ATP binding protein; COG: COG3845 - ABC-type uncharacterized transport systems, ATPase components; PFAM: PF00005; PROSITE: PS00211, PS50893; SMART: SM00382.
Dshi_2962 protein networkhttps://string-db.org/network/398580.Dshi_2962COG: COG4603 - ABC-type uncharacterized transport system, permease component; PFAM: PF02653-Branched-chain amino acid transport system / permease component; permease component; Belongs to the bin [...]
Dshi_2963 protein networkhttps://string-db.org/network/398580.Dshi_2963COG: COG1079 - Uncharacterized ABC-type transport system, permease component; PFAM: PF02653-Branched-chain amino acid transport system / permease component; permease component; Belongs to the bin [...]
Dshi_2964 protein networkhttps://string-db.org/network/398580.Dshi_2964Putative basic membrane protein; PFAM: PF02608; SUPERFAMILY: SSF53822.
Dshi_2965 protein networkhttps://string-db.org/network/398580.Dshi_2965Conserved hypothetical protein.
panB protein networkhttps://string-db.org/network/398580.Dshi_29663-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to [...]
Dshi_2967 protein networkhttps://string-db.org/network/398580.Dshi_2967Bifunctional enzyme involved in glycine degradation; COG: COG0404 - Glycine cleavage system T protein (aminomethyltransferase); PFAM: PF01266, PF01571, PF08669; Belongs to the GcvT family.
Dshi_2968 protein networkhttps://string-db.org/network/398580.Dshi_2968Conserved hypothetical protein.
Dshi_2969 protein networkhttps://string-db.org/network/398580.Dshi_2969Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme act [...]
gyaR protein networkhttps://string-db.org/network/398580.Dshi_2970Glyoxylate reductase; COG: COG1052 - Lactate dehydrogenase and related dehydrogenases; PFAM: PF00389, PF02826; PROSITE: PS00065, PS00671; Belongs to the D-isomer specific 2-hydroxyacid dehydrogen [...]
Dshi_2971 protein networkhttps://string-db.org/network/398580.Dshi_2971Conserved hypothetical protein; PFAM: PF06347; COG: COG3807 - Uncharacterized protein conserved in bacteria.
Dshi_2972 protein networkhttps://string-db.org/network/398580.Dshi_2972Hypothetical protein; PFAM: PF00989, PROSITE: PS50112, SMART: SM00091.
dcp protein networkhttps://string-db.org/network/398580.Dshi_2973SWISSPROT P27236: Peptidyl-dipeptidase dcp; COG: COG0339 - Zn-dependent oligopeptidases; PFAM: PF01432; PROSITE: PS00142.
moeB protein networkhttps://string-db.org/network/398580.Dshi_2974SWISSPROT P12282: Molybdopterin biosynthesis protein moeB; COG: COG0476 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; PFAM: PF00899, PF05237.
dut protein networkhttps://string-db.org/network/398580.Dshi_2975Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intrace [...]
coaBC protein networkhttps://string-db.org/network/398580.Dshi_2976Coenzyme A biosynthesis bifunctional protein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothen [...]
Dshi_2977 protein networkhttps://string-db.org/network/398580.Dshi_2977Conserved hypothetical protein; PFAM: PF04187 - Protein of unknown function DUF399; COG: COG3016 - Uncharacterized iron-regulated protein.
rpoH1 protein networkhttps://string-db.org/network/398580.Dshi_2978SWISSPROT P0AGB3: RNA polymerase sigma-32 factor; COG: COG0568 - DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); TIGRFAM: TIGR02392 alternative sigma factor RpoH; TIGR02937 RNA poly [...]
Dshi_2979 protein networkhttps://string-db.org/network/398580.Dshi_2979Putative bifunctional adenosylcobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
Dshi_2980 protein networkhttps://string-db.org/network/398580.Dshi_2980Hypothetical protein; PFAM: PF00300; related to phosphoglycerate mutase.
Dshi_2981 protein networkhttps://string-db.org/network/398580.Dshi_2981Putative molydopterin binding oxidoreductase; COG: COG2041 - Sulfite oxidase and related enzymes; PFAM: PF00174, PF03404; PRINTS: PR00407; SUPERFAMILY: SSF56524, SSF81296.
Dshi_2982 protein networkhttps://string-db.org/network/398580.Dshi_2982Conserved hypothetical protein; PROSITE: PS51257; SUPERFAMILY: SSF46626; related to cytochrome c.
Dshi_2983 protein networkhttps://string-db.org/network/398580.Dshi_2983Hypothetical protein; COG:COG2130 - Putative NADP-dependent oxidoreductases; PFAM: PF00107; SUPERFAMILY: SSF50129; PANTHER: Alcohol dehydrogenase related; related to zinc-binding dehydrogenase.
Dshi_2984 protein networkhttps://string-db.org/network/398580.Dshi_2984Hypothetical protein; COG: COG0625 - Glutathione S-transferase; SUPERFAMILY: SSF52833, SSF47616; Gene3D: G3DSA:3.40.30.10; similar to glutathione S-transferase.
Dshi_2985 protein networkhttps://string-db.org/network/398580.Dshi_2985COG: COG1802 - Transcriptional regulators; PFAM: PF00392, PF07729; PROSITE: PS50949; Gene3D: G3DSA:1.10.10.10; GntR type.
Dshi_2986 protein networkhttps://string-db.org/network/398580.Dshi_2986Conserved hypothetical protein DUF45; COG: COG1451 - Predicted metal-dependent hydrolase; PFAM: PF01863 - Protein of unknown function DUF45; PROSITE: PS00142.
Dshi_2987 protein networkhttps://string-db.org/network/398580.Dshi_2987TIGRFAM: TIGR02300 conserved hypothetical protein; PROSITE: PS00018.
Dshi_2988 protein networkhttps://string-db.org/network/398580.Dshi_2988Conserved hypothetical protein; PFAM: PF01906; COG: COG0393 - Uncharacterized conserved protein; Belongs to the UPF0145 family.
Dshi_2989 protein networkhttps://string-db.org/network/398580.Dshi_2989Hypothetical protein; PROSITE: PS51257; related to membrane lipoprotein.
Dshi_2990 protein networkhttps://string-db.org/network/398580.Dshi_2990HTH-type transcriptional regulator; COG: COG4333 - Uncharacterized protein conserved in bacteria; PFAM: PF00126, PF03466; PROSITE: PS5093; Gene3D: G3DSA:1.10.10.10; LysR family; Belongs to the Ly [...]
Dshi_2991 protein networkhttps://string-db.org/network/398580.Dshi_2991PFAM: PF07799-Protein of unknown function (DUF1643); COG: COG4333 - Uncharacterized protein conserved in bacteria.
dehH protein networkhttps://string-db.org/network/398580.Dshi_2992SWISSPROT Q01398: Haloacetate dehalogenase H-1; COG: COG0596 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); PFAM: PF00561; PRINTS: PR00412, PR00111.
Dshi_2993 protein networkhttps://string-db.org/network/398580.Dshi_2993Conserved hypothetical protein.
rpsO protein networkhttps://string-db.org/network/398580.Dshi_2994Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several [...]
Dshi_2995 protein networkhttps://string-db.org/network/398580.Dshi_2995Conserved hypothetical protein.
Dshi_2996 protein networkhttps://string-db.org/network/398580.Dshi_2996Hypothetical protein; COG: COG3568 - Metal-dependent hydrolase; PFAM: PF03372; PROSITE: PS51257; SUPERFAMILY: SSF56219; similar to Endonuclease/Exonuclease/Phosphatase family.
pnp protein networkhttps://string-db.org/network/398580.Dshi_2997Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
Dshi_2998 protein networkhttps://string-db.org/network/398580.Dshi_2998COG: COG0668 - Small-conductance mechanosensitive channel; PFAM: PF00924; SUPERFAMILY: SSF82689, SSF82861, SSF50182.
fadD1 protein networkhttps://string-db.org/network/398580.Dshi_2999SWISSPROT P69451: Long-chain-fatty-acid--CoA ligase; COG: COG0318 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; PFAM: PF00501; PRINTS: PR00154; PROSITE: PS00455.
mcd protein networkhttps://string-db.org/network/398580.Dshi_3000PFAM: Malonyl-CoA decarboxylase KEGG: rde:RD1_1475 malonyl-CoA decarboxylase. Good Pfam hit, good BLAST hit to several Roseobacter species, RBS 10nt upstream.
dctM2 protein networkhttps://string-db.org/network/398580.Dshi_3001TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: rde:RD1_1476 TrapT family, DctM subunit, putati [...]
dctQ4 protein networkhttps://string-db.org/network/398580.Dshi_3002PFAM: Tripartite ATP-independent periplasmic transporter DctQ component. BLAST hit to Proteobacteria.
dctP4 protein networkhttps://string-db.org/network/398580.Dshi_3003PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: rde:RD1_1478 C4-dicarboxylate transport system C4-dicarboxylate-binding protein, putative. BLAST hit, good RBS 6nt upstream.
Dshi_3004 protein networkhttps://string-db.org/network/398580.Dshi_3004PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rde:RD1_1479 GntR-family transcription regulator, putative; GntR family.
Dshi_3005 protein networkhttps://string-db.org/network/398580.Dshi_3005Hypothetical protein.
rpe protein networkhttps://string-db.org/network/398580.Dshi_3006PFAM: ribulose-phosphate 3-epimerase KEGG: rsp:RSP_2864 pentose-5-phosphate-3-epimerase.
ybgG protein networkhttps://string-db.org/network/398580.Dshi_3007Alpha-mannosidase; PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region KEGG: jan:Jann_2057 alpha-mannosidase.
Dshi_3008 protein networkhttps://string-db.org/network/398580.Dshi_3008PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein SMART: AAA ATPase KEGG: jan:Jann_2056 ABC transporter related. Contain duplicated ATPase; ATPase subunit; Belo [...]
Dshi_3009 protein networkhttps://string-db.org/network/398580.Dshi_3009ABC transporter related; Contain signal peptide und Transmembrane Helices; MSD.
Dshi_3010 protein networkhttps://string-db.org/network/398580.Dshi_3010ABC transporter related; Contain signal peptide und Transmembrane Helices; MSD.
Dshi_3011 protein networkhttps://string-db.org/network/398580.Dshi_3011ABC transporter related; Contain signal peptide, RBS 5nt upstream; periplasmic component.
Dshi_3012 protein networkhttps://string-db.org/network/398580.Dshi_3012KEGG: jan:Jann_2052 Zn-dependent hydrolase of the beta-lactamase fold.
Dshi_3013 protein networkhttps://string-db.org/network/398580.Dshi_3013PFAM: protein of unknown function DUF606 KEGG: jan:Jann_1137 protein of unknown function DUF606; TMH.
Dshi_3014 protein networkhttps://string-db.org/network/398580.Dshi_3014PFAM: Phytanoyl-CoA dioxygenase KEGG: jan:Jann_2051 phytanoyl-CoA dioxygenase.
Dshi_3015 protein networkhttps://string-db.org/network/398580.Dshi_3015Transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation KEGG: jan:Jann_2050 transcriptional regulator, AraC family; Ara [...]
deoC protein networkhttps://string-db.org/network/398580.Dshi_3016Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
ald protein networkhttps://string-db.org/network/398580.Dshi_3017PFAM: aldehyde dehydrogenase KEGG: sil:SPO3368 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
Dshi_3018 protein networkhttps://string-db.org/network/398580.Dshi_3018PFAM: protein of unknown function DUF1523.
Dshi_3019 protein networkhttps://string-db.org/network/398580.Dshi_3019Hypothetical protein.
dapE2 protein networkhttps://string-db.org/network/398580.Dshi_3020TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase PFAM: peptidase M20; peptidase dimerisation domain protein KEGG: rsp:RSP_1758 probable succinyl-diaminopimelate desu [...]
puuC protein networkhttps://string-db.org/network/398580.Dshi_3021PFAM: aldehyde dehydrogenase KEGG: sil:SPO0097 aldehyde dehydrogenase family protein; Gamma-Glu-gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
Dshi_3022 protein networkhttps://string-db.org/network/398580.Dshi_3022PFAM: PfkB domain protein KEGG: jan:Jann_1671 PfkB; rde:RD1_0962 PfkB family kinase, putative.
nth protein networkhttps://string-db.org/network/398580.Dshi_3023Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- [...]
ada protein networkhttps://string-db.org/network/398580.Dshi_3024ADA regulatory protein; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase PFAM: helix-turn-helix- domain containing protein AraC type; Methylated-DNA-[protein]-cysteine S-methyltransfer [...]
Dshi_3025 protein networkhttps://string-db.org/network/398580.Dshi_3025PFAM: OmpA/MotB domain protein; 17 kDa surface antigen KEGG: rsq:Rsph17025_0195 OmpA/MotB domain protein.
pdhR protein networkhttps://string-db.org/network/398580.Dshi_3026Pyruvate dehydrogenase complex repressor; PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: rde:RD1_1326 pdhR; pyruvate dehydrogenase complex repressor.
atpF2 protein networkhttps://string-db.org/network/398580.Dshi_3027ATP synthase F0; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous [...]
atpX protein networkhttps://string-db.org/network/398580.Dshi_3028ATP synthase F0; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous [...]
atpE2 protein networkhttps://string-db.org/network/398580.Dshi_3029ATP synthase F0; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous [...]
atpB1 protein networkhttps://string-db.org/network/398580.Dshi_3030ATP synthase F0; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
atpI protein networkhttps://string-db.org/network/398580.Dshi_3031ATP synthase F0; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
Dshi_3032 protein networkhttps://string-db.org/network/398580.Dshi_3032PFAM: Heparinase II/III family protein KEGG: rde:RD1_0654 hypothetical protein; sit:TM1040_0090 heparinase II/III-like.
rsmB1 protein networkhttps://string-db.org/network/398580.Dshi_3033PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; Methyltransferase type 11 KEGG: rsh:Rsph17029_2765 Fmu (Sun) domain protein; 16S rRNA m5C967 methyltransferase; rRNA (cyt [...]
Dshi_3034 protein networkhttps://string-db.org/network/398580.Dshi_3034PFAM: protein of unknown function DUF1674.
Dshi_3035 protein networkhttps://string-db.org/network/398580.Dshi_3035KEGG: jan:Jann_4038 hypothetical protein.
Dshi_3036 protein networkhttps://string-db.org/network/398580.Dshi_3036Efflux transporter; Colocated with MFP subunit; pfam00873,; RND family, RND subunit; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
Dshi_3037 protein networkhttps://string-db.org/network/398580.Dshi_3037Efflux transporter; Colocated with RND subunit; TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD; RND fa [...]
Dshi_3038 protein networkhttps://string-db.org/network/398580.Dshi_3038PFAM: regulatory protein TetR KEGG: rpb:RPB_3412 transcriptional regulator, TetR family; TetR family.
Dshi_3039 protein networkhttps://string-db.org/network/398580.Dshi_3039PFAM: BLUF domain protein KEGG: rpe:RPE_3231 BLUF domain protein. Good BLAST hit to several Rhodobacteraceae species, pfam04940, RBS 10nt upstream.
dapB protein networkhttps://string-db.org/network/398580.Dshi_3040Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
rbfA protein networkhttps://string-db.org/network/398580.Dshi_3041Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but n [...]
truB protein networkhttps://string-db.org/network/398580.Dshi_3042tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
Dshi_3043 protein networkhttps://string-db.org/network/398580.Dshi_3043PFAM: protein of unknown function DUF1294 KEGG: ret:RHE_CH01861 putative inner membrane protein, predicted 3TMH.
Dshi_3044 protein networkhttps://string-db.org/network/398580.Dshi_3044PFAM: Tannase and feruloyl esterase KEGG: psa:PST_1665 tannase precursor; BLAST hit to Rhodobacteraceae, RBS 5nt upstream.
Dshi_3045 protein networkhttps://string-db.org/network/398580.Dshi_3045PFAM: glycosyl transferase family 2 KEGG: rde:RD1_0635 glycosyl transferase, putative.
ttuD protein networkhttps://string-db.org/network/398580.Dshi_3046Hydroxypyruvate reductase; PFAM: MOFRL domain protein KEGG: rso:RSp1449 probable hydroxypyruvate reductase oxidoreductase protein.
glxR protein networkhttps://string-db.org/network/398580.Dshi_30472-hydroxy-3-oxopropionate reductase; COG2084 MmsB - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases PFAM: oxidoreductase domain protein; 6-phosphogluconate dehydrog [...]
Dshi_3048 protein networkhttps://string-db.org/network/398580.Dshi_3048GntR-family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: bbr:BB2654 GntR-family transcriptional regulator COG2186:FadR, PRK10225; GntR domain protein KE [...]
Dshi_3049 protein networkhttps://string-db.org/network/398580.Dshi_3049RBS 7nt upstream PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase KEGG: acr:Acry [...]
citE2 protein networkhttps://string-db.org/network/398580.Dshi_3050Citrate lyase subunit beta; PFAM: HpcH/HpaI aldolase KEGG: rsq:Rsph17025_2481 citrate (pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
Dshi_3051 protein networkhttps://string-db.org/network/398580.Dshi_3051Hypothetical protein.
Dshi_3052 protein networkhttps://string-db.org/network/398580.Dshi_3052Mu-like prophage I protein; N-terminal elongation? Mu phage related?.
Dshi_3053 protein networkhttps://string-db.org/network/398580.Dshi_3053rde:RD1_0339 transposase, putative.
Dshi_3054 protein networkhttps://string-db.org/network/398580.Dshi_3054PFAM: phospholipid/glycerol acyltransferase KEGG: sit:TM1040_3500 phospholipid/glycerol acyltransferas,COG0204.
Dshi_3055 protein networkhttps://string-db.org/network/398580.Dshi_3055SY, PFAM: protein of unknown function DUF214 KEGG: rsh:Rsph17029_2388 protein of unknown function DUF214, COG2177, conserved neighborhood regions (with COG2884 and COG0204).
ftsE protein networkhttps://string-db.org/network/398580.Dshi_3056PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1599 ftsE; cell division ATP-binding protein, putative.
Dshi_3057 protein networkhttps://string-db.org/network/398580.Dshi_3057TIGRFAM: MJ0042 family finger-like protein KEGG: sil:SPO0336 hypothetical protein, Bad blast, but this protein contains a CXXCX(19)CXXC motif suggestive of MJ0042 family.
Dshi_3058 protein networkhttps://string-db.org/network/398580.Dshi_3058TIGRFAM: conserved hypothetical protein TIGR02302 KEGG: sil:SPO0335 hypothetical protein.
lysA protein networkhttps://string-db.org/network/398580.Dshi_3059Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
Dshi_3060 protein networkhttps://string-db.org/network/398580.Dshi_3060KEGG: rsq:Rsph17025_2447 hypothetical protein, RBS.
Dshi_3061 protein networkhttps://string-db.org/network/398580.Dshi_3061Hypothetical protein.
argH protein networkhttps://string-db.org/network/398580.Dshi_3062TIGRFAM: argininosuccinate lyase PFAM: fumarate lyase KEGG: sil:SPO0332 argininosuccinate lyase.
tlpA protein networkhttps://string-db.org/network/398580.Dshi_3063Thiol:disulfide interchange protein TlpA; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein Swissprot: Thiol:disulfide interchange protein tlpA [...]
tag protein networkhttps://string-db.org/network/398580.Dshi_3064KEGG: rsq:Rsph17025_2464 DNA-3-methyladenine glycosylase I TIGRFAM: DNA-3-methyladenine glycosylase I PFAM: methyladenine glycosylase.
Dshi_3065 protein networkhttps://string-db.org/network/398580.Dshi_3065PFAM: EAL domain protein KEGG: pde:Pden_2025 diguanylate phosphodiesterase, DUF2.
atoB protein networkhttps://string-db.org/network/398580.Dshi_3066KEGG: sil:SPO0326 acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase PFAM: Thiolase; Acetoacetyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
fabG1 protein networkhttps://string-db.org/network/398580.Dshi_3067TIGRFAM: acetoacetyl-CoA reductase PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein KEGG: jan:Jann_0492 acetoacetyl-CoA reductase; 3-ketoacyl- [...]
Dshi_3068 protein networkhttps://string-db.org/network/398580.Dshi_3068PFAM: regulatory protein LysR; LysR substrate-binding; HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family KEGG: jan:Jann_0491 transcriptional regulator, LysR family; LysR family.
Dshi_3069 protein networkhttps://string-db.org/network/398580.Dshi_3069PFAM: protein of unknown function DUF465 KEGG: pde:Pden_2028 protein of unknown function DUF465, COG5570.
Dshi_3070 protein networkhttps://string-db.org/network/398580.Dshi_3070Methyltransferase type 11; KEGG: rsp:RSP_0748 N-6 adenine-specific DNA methylase; pfam05175 MTS Methyltransferase small domain; COG4123 Predicted O-methyltransferase.
Dshi_3071 protein networkhttps://string-db.org/network/398580.Dshi_3071Pfam09413 Protein of unknown function (DUF2007) KEGG: rde:RD1_3400 hypothetical protein.
ispB protein networkhttps://string-db.org/network/398580.Dshi_3072Octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase KEGG: rsh:Rsph17029_2406 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
ispE protein networkhttps://string-db.org/network/398580.Dshi_30734-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
Dshi_3074 protein networkhttps://string-db.org/network/398580.Dshi_3074PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein SMART: Tetratricopeptide domain protein KEGG: sil:SPO0317 TPR domain protein. Annotation was d [...]
ydiS protein networkhttps://string-db.org/network/398580.Dshi_3075Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
greA1 protein networkhttps://string-db.org/network/398580.Dshi_3076Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trappi [...]
Dshi_3077 protein networkhttps://string-db.org/network/398580.Dshi_3077KEGG: sil:SPO0311 hypothetical protein.
Dshi_3078 protein networkhttps://string-db.org/network/398580.Dshi_3078PFAM: AzlC family protein KEGG: rsq:Rsph17025_2457 AzlC family protein.
Dshi_3079 protein networkhttps://string-db.org/network/398580.Dshi_3079PFAM: branched-chain amino acid transport pfam05437AzlDKEGG: rde:RD1_3412 hypothetical protein; Neighborhood with AzlC family protein; predicted TMH.
Dshi_3080 protein networkhttps://string-db.org/network/398580.Dshi_3080Efflux transporter; Colocated with RND subunit; TIGRFAM: efflux transporter, RND family, MFP subunit PFAM: secretion protein HlyD family protein KEGG: jan:Jann_1310 secretion protein HlyD; RND fa [...]
Dshi_3081 protein networkhttps://string-db.org/network/398580.Dshi_3081Efflux transporter; Colocated with MFP subunit; pfam00873,; RND family, RND subunit; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
Dshi_3082 protein networkhttps://string-db.org/network/398580.Dshi_3082KEGG: rsh:Rsph17029_2660 hypothetical protein, COG4233.
Dshi_3083 protein networkhttps://string-db.org/network/398580.Dshi_3083Protein of unknown function DUF179; pfam02622,DUF179,COG1678 Putative transcriptional regulator; KEGG: rde:RD1_3419 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
Dshi_3084 protein networkhttps://string-db.org/network/398580.Dshi_3084Sua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
Dshi_3085 protein networkhttps://string-db.org/network/398580.Dshi_3085PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain KEGG: sil:SPO0298 acyl-CoA dehydrogenase family protein; rde:RD1_3417 putative acyl-CoA.
Dshi_3086 protein networkhttps://string-db.org/network/398580.Dshi_3086Metallo-beta-lactamase family protein; PFAM: beta-lactamase domain protein KEGG: rsh:Rsph17029_2397 beta-lactamase domain protein.
Dshi_3087 protein networkhttps://string-db.org/network/398580.Dshi_308745aa protein PFAM: aa3 type cytochrome c oxidase subunit IV.
Dshi_3088 protein networkhttps://string-db.org/network/398580.Dshi_3088KEGG: rsh:Rsph17029_2395 hypothetical protein.
moaB protein networkhttps://string-db.org/network/398580.Dshi_3089Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
udgA protein networkhttps://string-db.org/network/398580.Dshi_3090uracil-DNA glycosylase; TIGRFAM: phage SPO1 DNA polymerase-related protein PFAM: Uracil-DNA glycosylase superfamily KEGG: sil:SPO0288 uracil-DNA glycosylase; rde:RD1_3425 udgA; uracil-DNA glycosy [...]
pyrB protein networkhttps://string-db.org/network/398580.Dshi_3091TIGRFAM: aspartate carbamoyltransferase PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain KEGG: rde:RD1_34 [...]
Dshi_3092 protein networkhttps://string-db.org/network/398580.Dshi_3092Hypothetical protein.
Dshi_3093 protein networkhttps://string-db.org/network/398580.Dshi_3093Hypothetical protein.
pyrC1 protein networkhttps://string-db.org/network/398580.Dshi_3094Dihydroorotase; KEGG: rsh:Rsph17029_2663 dihydroorotase, multifunctional complex type TIGRFAM: dihydroorotase, multifunctional complex type PFAM: amidohydrolase; DHOase.
plsY protein networkhttps://string-db.org/network/398580.Dshi_3095Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilize [...]
Dshi_3096 protein networkhttps://string-db.org/network/398580.Dshi_3096PFAM: protein of unknown function DUF805 KEGG: jan:Jann_3908 protein of unknown function DUF805,COG3152 - Predicted membrane protein.
gsh protein networkhttps://string-db.org/network/398580.Dshi_3097Glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
Dshi_3098 protein networkhttps://string-db.org/network/398580.Dshi_3098Hypothetical protein.
Dshi_3099 protein networkhttps://string-db.org/network/398580.Dshi_3099Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
ubiA protein networkhttps://string-db.org/network/398580.Dshi_3100Para-hydroxybenzoate--polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of [...]
Dshi_3101 protein networkhttps://string-db.org/network/398580.Dshi_3101PFAM: OmpA/MotB domain protein KEGG: sit:TM1040_3081 OmpA/MotB. Annotation was derived from R. denitrificans.
Dshi_3102 protein networkhttps://string-db.org/network/398580.Dshi_3102KEGG: rsh:Rsph17029_2670 hypothetical protein.
moaE protein networkhttps://string-db.org/network/398580.Dshi_3103Molybdopterin-converting factor subunit 2; PFAM: molybdopterin biosynthesis MoaE protein KEGG: sil:SPO3633 molybdopterin converting factor, subunit 2; Molybdopterin-converting factor large subuni [...]
moaD protein networkhttps://string-db.org/network/398580.Dshi_3104TIGRFAM: molybdopterin converting factor, subunit 1 PFAM: thiamineS protein KEGG: rsp:RSP_1072 putative molybdopterin MPT converting factor, subunit 1 protein; Neigbhorhood; Molybdopterin-convert [...]
pgsA protein networkhttps://string-db.org/network/398580.Dshi_3105TIGRFAM: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase PFAM: CDP-alcohol phosphatidyltransferase KEGG: rsh:Rsph17029_2734 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidy [...]
rluA protein networkhttps://string-db.org/network/398580.Dshi_3106Ribosomal large subunit pseudouridine synthase A; Pfam00849 PseudoU_synth_2, COG0564 -Pseudouridylate synthases, 23S RNA-specific, TIGR00005 pseudouridine synthase, RluA family, good blast hit to [...]
rhtB protein networkhttps://string-db.org/network/398580.Dshi_3107Homoserine/homoserine lactone efflux protein; PFAM: Lysine exporter protein (LYSE/YGGA) KEGG: sit:TM1040_0069 lysine exporter protein (LysE/YggA), good blast hit to R. denitrificans.
Dshi_3108 protein networkhttps://string-db.org/network/398580.Dshi_3108PFAM: DSBA oxidoreductase KEGG: rde:RD1_0191 protein-disulfide isomerase, putative.
Dshi_3109 protein networkhttps://string-db.org/network/398580.Dshi_3109KEGG: rde:RD1_0522 hypothetical protein.
Dshi_3110 protein networkhttps://string-db.org/network/398580.Dshi_3110PFAM: cyclic nucleotide-binding KEGG: rsq:Rsph17025_3179 hypothetical protein.
aslA protein networkhttps://string-db.org/network/398580.Dshi_3111Arylsulfatase precursor; PFAM: sulfatase KEGG: rde:RD1_0531 arylsulfatase; Aryl-sulfate sulphohydrolase; AS.
Dshi_3112 protein networkhttps://string-db.org/network/398580.Dshi_3112KEGG: rde:RD1_0530 nonspecific acid phosphatase.
Dshi_3113 protein networkhttps://string-db.org/network/398580.Dshi_3113Putative MoxR-like ATPase; PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5 KEGG: rde:RD1_0529 MoxR-like ATPase, putative.
Dshi_3114 protein networkhttps://string-db.org/network/398580.Dshi_3114PFAM: protein of unknown function DUF58 KEGG: rde:RD1_0528 hypothetical protein, COG1721.
Dshi_3115 protein networkhttps://string-db.org/network/398580.Dshi_3115KEGG: rde:RD1_0527 hypothetical protein.
Dshi_3116 protein networkhttps://string-db.org/network/398580.Dshi_3116PFAM:VWA von Willebrand factor type A domain KEGG: rde:RD1_0526 hypothetical protein,TMH.
Dshi_3117 protein networkhttps://string-db.org/network/398580.Dshi_3117KEGG: rde:RD1_0525 hypothetical protein.
Dshi_3118 protein networkhttps://string-db.org/network/398580.Dshi_3118KEGG: rde:RD1_0524 hypothetical protein.
gltA1 protein networkhttps://string-db.org/network/398580.Dshi_3119KEGG: sit:TM1040_2728 citrate synthase.
yfdW2 protein networkhttps://string-db.org/network/398580.Dshi_3120PFAM: CoA-transferase family III PRK05398 formyl-coenzyme A transferase KEGG: sit:TM1040_2729 L-carnitine dehydratase/bile acid-inducible protein F; Formyl-CoA transferase; Belongs to the CoA-tra [...]
Dshi_3121 protein networkhttps://string-db.org/network/398580.Dshi_3121PFAM: protein of unknown function DUF112 transmembrane COG3333 - Uncharacterized protein conserved in bacteria.
Dshi_3122 protein networkhttps://string-db.org/network/398580.Dshi_3122KEGG: rde:RD1_2947 hypothetical protein.
Dshi_3123 protein networkhttps://string-db.org/network/398580.Dshi_3123COG3181 Uncharacterized protein conserved in bacteria KEGG: rde:RD1_2946 hypothetical protein.
qseB protein networkhttps://string-db.org/network/398580.Dshi_3124PFAM: response regulator receiver; transcriptional regulator domain protein KEGG: sit:TM1040_2733 two component transcriptional regulator, winged helix family COG0745 - Response regulators consis [...]
qseC protein networkhttps://string-db.org/network/398580.Dshi_3125Sensor protein QseC; PFAM:HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, 2CSK_N Two-component sensor kinase N-terminal KEGG: sit:TM1040_2734 periplasmic sensor signal transduc [...]
Dshi_3126 protein networkhttps://string-db.org/network/398580.Dshi_3126KEGG: sil:SPO0189 putative iron(III) transport system substrate-binding protein. Annotation was derived from R. denitrificans.
ugpB2 protein networkhttps://string-db.org/network/398580.Dshi_3127Sugar ABC transporter; PFAM: extracellular solute-binding protein family 1 KEGG: rde:RD1_4122 sugar ABC transporter, periplasmic sugar-binding protein, putative; periplasmic sugar-binding protein [...]
ugpC5 protein networkhttps://string-db.org/network/398580.Dshi_3128PFAM: ABC transporter related; Transport-associated OB domain protein pfam00005,SMART: AAA ATPase KEGG: rde:RD1_4120 SN-glycerol-3-phosphate transport ATP-binding protein; ATP-binding protein (sn [...]
ugpC1 protein networkhttps://string-db.org/network/398580.Dshi_3129PFAM: ABC transporter related; pfam00005, Transport-associated OB domain protein SMART: AAA ATPase KEGG: rde:RD1_4119 sugar ABC transporter, ATP-binding protein, putative; ATP-binding protein (sn [...]
ugpA2 protein networkhttps://string-db.org/network/398580.Dshi_3130Sugar ABC transporter; PFAM: binding-protein-dependent transport systems inner membrane component KEGG: rde:RD1_4118 sugar ABC transporter, permease protein, putative COG1175 - ABC-type sugar tra [...]
ugpE1 protein networkhttps://string-db.org/network/398580.Dshi_3131Sugar ABC transporter; PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4088 binding-protein-dependent transport systems inner membrane component COG0395 [...]
Dshi_3132 protein networkhttps://string-db.org/network/398580.Dshi_3132Hypothetical protein; TMH.
Dshi_3133 protein networkhttps://string-db.org/network/398580.Dshi_3133Putative transcriptional regulator; PFAM: Penicillinase repressor KEGG: rde:RD1_4115 transcriptional regulator, putative.
Dshi_3134 protein networkhttps://string-db.org/network/398580.Dshi_3134PFAM: peptidase M56 BlaR1 KEGG: rde:RD1_4114 BlaR1 peptidase M56 domain protein; Motif HEXXH.
Dshi_3135 protein networkhttps://string-db.org/network/398580.Dshi_3135Hypothetical protein.
Dshi_3136 protein networkhttps://string-db.org/network/398580.Dshi_3136LipoP1.0 KEGG: jan:Jann_1313 lipoprotein, putative.
Dshi_3137 protein networkhttps://string-db.org/network/398580.Dshi_3137Conserved hypothetical protein.
Dshi_3138 protein networkhttps://string-db.org/network/398580.Dshi_3138Conserved hypothetical protein; KEGG: smd:Smed_4297 alpha/beta hydrolase fold.
Dshi_3139 protein networkhttps://string-db.org/network/398580.Dshi_3139KEGG: jan:Jann_1112 cupin 2 protein.
Dshi_3140 protein networkhttps://string-db.org/network/398580.Dshi_3140PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator KEGG: rde:RD1_3944 transcriptional regulatory protein, LacI family, putative; LacI family.
ugpC3 protein networkhttps://string-db.org/network/398580.Dshi_3141PFAM: ABC transporter related; Transport-associated OB domain protein pfam00005,SMART: AAA ATPase KEGG: jan:Jann_4087 ABC transporter related; ATP-binding protein (sn-glycerol-3-phosphate import [...]
ugpE2 protein networkhttps://string-db.org/network/398580.Dshi_3142Sugar ABC transporter; PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4088 binding-protein-dependent transport systems inner membrane component COG0395 [...]
ugpA3 protein networkhttps://string-db.org/network/398580.Dshi_3143Sugar ABC transporter; PFAM: binding-protein-dependent transport systems inner membrane component KEGG: jan:Jann_4089 binding-protein-dependent transport systems inner membrane component; COG1175 [...]
ugpB3 protein networkhttps://string-db.org/network/398580.Dshi_3144Sugar ABC transporter, periplasmic sugar-binding protein, putative; PFAM: extracellular solute-binding protein family 1 COG1653 - ABC-type sugar transport system, periplasmic component.
garL protein networkhttps://string-db.org/network/398580.Dshi_3145PFAM: HpcH/HpaI aldolase KEGG: mpt:Mpe_A0974 2-dehydro-3-deoxyglucarate aldolase, COG3836 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, good sp-hit; KDGlucA; 5-keto-4-deoxy-D-glucarate aldol [...]
accA protein networkhttps://string-db.org/network/398580.Dshi_3146Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on [...]
Dshi_3147 protein networkhttps://string-db.org/network/398580.Dshi_3147Conserved hypothetical protein; PFAM: protein of unknown function DUF306 Meta and HslJ KEGG: sil:SPO2951 hypothetical protein COG3126 - Uncharacterized protein conserved in bacteria; good GC-Fram [...]
Dshi_3148 protein networkhttps://string-db.org/network/398580.Dshi_3148Hypothetical protein.
ddpX protein networkhttps://string-db.org/network/398580.Dshi_3149Putative D-alanyl-d-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
dat protein networkhttps://string-db.org/network/398580.Dshi_3150TIGR01121D-amino acid aminotransferase PFAM: aminotransferase class IV KEGG: jan:Jann_0363 aminotransferase, class IV; good blast hit; DAAT; D-amino acid transaminase; D-amino acid aminotransfera [...]
Dshi_3151 protein networkhttps://string-db.org/network/398580.Dshi_3151PFAM: regulatory protein LysR; LysR substrate-binding KEGG: sil:SPO1110 transcriptional regulator, LysR family COG0583 - Transcriptional regulator; LysR family.
Dshi_3152 protein networkhttps://string-db.org/network/398580.Dshi_3152PFAM: protein of unknown function DUF1445 KEGG: sil:SPO1111 hypothetical protein; Belongs to the D-glutamate cyclase family.
Dshi_3153 protein networkhttps://string-db.org/network/398580.Dshi_3153PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: sil:SPO1112 TRAP transporter, periplasmic protein.
Dshi_3154 protein networkhttps://string-db.org/network/398580.Dshi_3154KEGG: sil:SPO1113 TRAP transporter, transmembrane protein, putative,TMH.
Dshi_3155 protein networkhttps://string-db.org/network/398580.Dshi_3155TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: sil:SPO1114 TRAP dicarboxylate transporter, DctM subunit,TMH.
Dshi_3156 protein networkhttps://string-db.org/network/398580.Dshi_3156Conserved hypothetical protein.
Dshi_3157 protein networkhttps://string-db.org/network/398580.Dshi_3157PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: csa:Csal_2479 TRAP dicarboxylate transporter, DctP subunit.
Dshi_3158 protein networkhttps://string-db.org/network/398580.Dshi_3158TRAP transporter-DctQ subunit putative; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component KEGG: rsq:Rsph17025_2045 tripartite ATP-independent periplasmic transporter, DctQ c [...]
Dshi_3159 protein networkhttps://string-db.org/network/398580.Dshi_3159TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: bbr:BB0721 hypothetical protein,TMH.
Dshi_3160 protein networkhttps://string-db.org/network/398580.Dshi_3160Hypothetical protein; TMH.
napC protein networkhttps://string-db.org/network/398580.Dshi_3161PFAM: NapC/NirT cytochrome c domain protein KEGG: rsq:Rsph17025_3218 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
napB protein networkhttps://string-db.org/network/398580.Dshi_3162Cytochrome c-type protein NapB; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
napH protein networkhttps://string-db.org/network/398580.Dshi_3163TIGRFAM: ferredoxin-type protein, NapH/MauN family KEGG: rsq:Rsph17025_3220 MauM/NapG family ferredoxin-type protein.
napG protein networkhttps://string-db.org/network/398580.Dshi_3164TIGRFAM: MauM/NapG family ferredoxin-type protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein KEGG: dar:Daro_3839 napG; MauM/NapG ferredoxin-type protein.
napA protein networkhttps://string-db.org/network/398580.Dshi_3165Periplasmic nitrate reductase NapA; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
napD protein networkhttps://string-db.org/network/398580.Dshi_3166Periplasmic nitrate reductase NapD; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA [...]
napF protein networkhttps://string-db.org/network/398580.Dshi_3167Ferredoxin-type protein napF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF fa [...]
apbE1 protein networkhttps://string-db.org/network/398580.Dshi_3168ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Be [...]
cycA1 protein networkhttps://string-db.org/network/398580.Dshi_3169PFAM: cytochrome c class I KEGG: sil:SPOA0055 cytochrome c family protein.
Dshi_3170 protein networkhttps://string-db.org/network/398580.Dshi_3170Hypothetical protein.
cbiX1 protein networkhttps://string-db.org/network/398580.Dshi_3171PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein KEGG: rde:RD1_1574 cbiX; CbiX protein, putative.
nirN protein networkhttps://string-db.org/network/398580.Dshi_3172Nitrite reductase protein N; PFAM: cytochrome d1 heme region KEGG: sil:SPOA0228 nitrite reductase protein N.
nirJ protein networkhttps://string-db.org/network/398580.Dshi_3173Putative nitrite reductase heme biosynthesis J protein; PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: sil:SPOA0227 nitrite reductase heme biosynthesis J protein.
nirH protein networkhttps://string-db.org/network/398580.Dshi_3174KEGG: sil:SPOA0226 nitrite reductase heme biosynthesis H protein, COG1522 - Transcriptional regulators.
nirG protein networkhttps://string-db.org/network/398580.Dshi_3175Nitrite reductase heme biosynthesis G; SMART: regulatory protein AsnC/Lrp family KEGG: rde:RD1_1570 nitrite reductase heme biosynthesis G.
nirD protein networkhttps://string-db.org/network/398580.Dshi_3176KEGG: sil:SPOA0224 nitrite reductase heme biosynthesis D/L protein, putative.
nirF protein networkhttps://string-db.org/network/398580.Dshi_3177PFAM: cytochrome d1 heme region KEGG: rde:RD1_1568 cytochrome cd1.
nirC protein networkhttps://string-db.org/network/398580.Dshi_3178KEGG: sil:SPOA0222 cytochrome c55X, neighborhood; c55X.
nirE protein networkhttps://string-db.org/network/398580.Dshi_3179TIGRFAM: uroporphyrin-III C-methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase KEGG: sil:SPOA0221 nitrite reductase heme biosynthesis E protein rde:RD1_1 [...]
nirS protein networkhttps://string-db.org/network/398580.Dshi_3180Nitrite reductase precursor; PFAM: cytochrome d1 heme region KEGG: rde:RD1_1565 nitrite reductase; Hydroxylamine reductase; Cytochrome oxidase; Cytochrome cd1.
nosR2 protein networkhttps://string-db.org/network/398580.Dshi_3181Nitrous oxide reductase regulatory protein NosR; PFAM: FMN-binding domain protein KEGG: pde:Pden_2486 FMN-binding domain protein.
Dshi_3182 protein networkhttps://string-db.org/network/398580.Dshi_3182PFAM: NnrS family protein KEGG: sil:SPOA0219 NnrS, putative.
norC protein networkhttps://string-db.org/network/398580.Dshi_3183KEGG: sil:SPOA0217 nitric oxide reductase, small subunit; NOR small subunit; Nitric oxide reductase cytochrome c subunit.
norB protein networkhttps://string-db.org/network/398580.Dshi_3184KEGG: sil:SPOA0216 nitric oxide reductase, large subunit rde:RD1_1561 norB; nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
norQ protein networkhttps://string-db.org/network/398580.Dshi_3185KEGG: sil:SPOA0215 nitric oxide reductase Q protein.
norD protein networkhttps://string-db.org/network/398580.Dshi_3186Nitric oxide reductase D protein; PFAM: von Willebrand factor type A KEGG: sil:SPOA0214 nitric oxide reductase D protein pde:Pden_2481 von Willebrand factor, type A.
norE protein networkhttps://string-db.org/network/398580.Dshi_3187Nitric oxide reductase E protein; PFAM: cytochrome c oxidase subunit III KEGG:rde:RD1_1558 norE; NorE protein.
Dshi_3188 protein networkhttps://string-db.org/network/398580.Dshi_3188Hypothetical protein.
Dshi_3189 protein networkhttps://string-db.org/network/398580.Dshi_3189Transcriptional regulator; PFAM: cyclic nucleotide-binding KEGG: sil:SPOA0323 cyclic nucleotide-binding protein; similar to DnrD.
hemA3 protein networkhttps://string-db.org/network/398580.Dshi_3190KEGG: rde:RD1_3778 5-aminolevulinic acid synthase TIGRFAM: 5-aminolevulinic acid synthase PFAM: aminotransferase class I and II; Delta-ALA synthetase; Delta-aminolevulinate synthase; 5-aminolevul [...]
dnr protein networkhttps://string-db.org/network/398580.Dshi_3191Transcriptional regulator Dnr; PFAM: cyclic nucleotide-binding SMART: regulatory protein Crp KEGG: sil:SPOA0323 cyclic nucleotide-binding protein.
Dshi_3192 protein networkhttps://string-db.org/network/398580.Dshi_3192Hypothetical protein.
nosR3 protein networkhttps://string-db.org/network/398580.Dshi_3193KEGG:rde:RD1_1546 nosR; nitrous-oxide reductase regulatory protein NosR PFAM: FMN-binding domain protein.
nosZ protein networkhttps://string-db.org/network/398580.Dshi_3194KEGG:rde:RD1_1547 nosZ; nitrous-ide reductase.
nosD protein networkhttps://string-db.org/network/398580.Dshi_3195Nitrous oxide maturation protein; PFAM: periplasmic copper-binding NosD SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis KEGG: rde:RD1_1548 nosD; nitrous oxide maturat [...]
nosF protein networkhttps://string-db.org/network/398580.Dshi_3196PFAM: ABC transporter related SMART: AAA ATPase KEGG: rde:RD1_1549 nosF; copper transport ATP-binding protein NosF.
nosY protein networkhttps://string-db.org/network/398580.Dshi_3197KEGG: pde:Pden_4216 nitrous oxide maturation protein NosY.
nosL protein networkhttps://string-db.org/network/398580.Dshi_3198Nitrous oxide reductase accessory protein NosL; PFAM: NosL family protein KEGG: pde:Pden_4215 NosL family protein.
nosX protein networkhttps://string-db.org/network/398580.Dshi_3199Putative nitrous-oxide reductase protein NosX; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a t [...]
Dshi_3200 protein networkhttps://string-db.org/network/398580.Dshi_3200PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein KEGG: jan:Jann_2601 protein of unknown function DUF861, cupin_3.
Dshi_3201 protein networkhttps://string-db.org/network/398580.Dshi_3201PFAM: Endoribonuclease L-PSP KEGG: rde:RD1_1044 endoribonuclease L-PSP family protein, putative.
uraA protein networkhttps://string-db.org/network/398580.Dshi_3202TIGRFAM: uracil-xanthine permease PFAM: Xanthine/uracil/vitamin C permease KEGG: rde:RD1_4153 xanthine/uracil permease, putative,10xTHM; Uracil transporter.
allA protein networkhttps://string-db.org/network/398580.Dshi_3203Ureidoglycolatehydrolase; PFAM: Ureidoglycolate hydrolase KEGG: rsh:Rsph17029_0204 ureidoglycolate hydrolase.
Dshi_3204 protein networkhttps://string-db.org/network/398580.Dshi_3204PFAM: polysaccharide deacetylase; pfam09349, OHCU_decarbox, OHCU decarboxylase. KEGG: jan:Jann_2608 polysaccharide deacetylase.
Dshi_3205 protein networkhttps://string-db.org/network/398580.Dshi_3205TIGRFAM: Hydroxyisourate hydrolase PFAM: Transthyretin KEGG: rde:RD1_4150 hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
Dshi_3206 protein networkhttps://string-db.org/network/398580.Dshi_3206PFAM: regulatory protein LysR; LysR substrate-binding; HTH_1 pfam00126 Bacterial regulatory helix-turn-helix protein, lysR family KEGG: rde:RD1_4149 transcriptional regulator, LysR family, putati [...]
Dshi_3207 protein networkhttps://string-db.org/network/398580.Dshi_3207PFAM: protein of unknown function DUF989 KEGG: rde:RD1_4148 hypothetical protein.
Dshi_3208 protein networkhttps://string-db.org/network/398580.Dshi_3208Hypothetical protein.
Dshi_3209 protein networkhttps://string-db.org/network/398580.Dshi_3209Hypothetical protein.
ymdC protein networkhttps://string-db.org/network/398580.Dshi_3210PFAM: phospholipase D/Transphosphatidylase KEGG: bpe:BP3092 putative phospholipase D protein.
Dshi_3211 protein networkhttps://string-db.org/network/398580.Dshi_3211KEGG: mpt:Mpe_A0912 putative sulfite oxidase cytochrome subunit.
Dshi_3212 protein networkhttps://string-db.org/network/398580.Dshi_3212PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain KEGG: mpt:Mpe_A0911 putative sulfite oxidase;nwi:Nwi_2988 oxidoreductase, molybdopterin binding.
Dshi_3213 protein networkhttps://string-db.org/network/398580.Dshi_3213PFAM: integrase family protein KEGG: nwi:Nwi_0831 phage integrase; Belongs to the 'phage' integrase family.
cas3 protein networkhttps://string-db.org/network/398580.Dshi_3214KEGG: rru:Rru_A0340 CRISPR-associated helicase Cas3, core TIGRFAM: CRISPR-associated helicase Cas3 PFAM: helicase domain protein SMART: DEAD-like helicases.
cse1 protein networkhttps://string-db.org/network/398580.Dshi_3215TIGRFAM: CRISPR-associated protein, Cse1 family KEGG: rru:Rru_A0341 hypothetical protein;aeh:Mlg_0954 CRISPR-associated protein, CSE1 family.
Dshi_3216 protein networkhttps://string-db.org/network/398580.Dshi_3216Hypothetical protein.
cse3 protein networkhttps://string-db.org/network/398580.Dshi_3217TIGRFAM: CRISPR-associated protein, Cse4 family PFAM: CRISPR-associated protein CT1975 KEGG: rru:Rru_A0344 CRISPR-associated CT1975 family protein; Cse4 family.
cas5 protein networkhttps://string-db.org/network/398580.Dshi_3218TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5 KEGG: rru:Rru_A0345 CRISPR-associated CT1976 family protein.
cse2 protein networkhttps://string-db.org/network/398580.Dshi_3219PFAM: CRISPR-associated protein CT1974 KEGG: rru:Rru_A0346 CRISPR-associated CT1974 family protein TIGR01907 CRISPR-associated protein, Cse3 family; Cse3 family.
cas1 protein networkhttps://string-db.org/network/398580.Dshi_3220Cas1: CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (vir [...]
cas2 protein networkhttps://string-db.org/network/398580.Dshi_3221TIGRFAM: CRISPR-associated protein Cas2 KEGG: rru:Rru_A0348 CRISPR-associated protein, Cas2.
Dshi_3222 protein networkhttps://string-db.org/network/398580.Dshi_3222Conserved hypothetical protein.
Dshi_3223 protein networkhttps://string-db.org/network/398580.Dshi_3223Hypothetical protein; TIGRFAM: DNA binding domain, excisionase family KEGG: she:Shewmr4_2783 hypothetical protein.
Dshi_3224 protein networkhttps://string-db.org/network/398580.Dshi_3224PFAM: integrase family protein KEGG: mpt:Mpe_A3816 site-specific recombinase XerD-like protein; Belongs to the 'phage' integrase family.
Dshi_3225 protein networkhttps://string-db.org/network/398580.Dshi_3225Hypothetical protein.
Dshi_3226 protein networkhttps://string-db.org/network/398580.Dshi_3226Hypothetical protein.
Dshi_3227 protein networkhttps://string-db.org/network/398580.Dshi_3227Hypothetical protein.
dapF protein networkhttps://string-db.org/network/398580.Dshi_3228Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of t [...]
Dshi_3229 protein networkhttps://string-db.org/network/398580.Dshi_3229KEGG: pde:Pden_0396 MiaB-like tRNA modifying enzyme TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme PFAM: Radical SAM domain protein; Protein of unknown function UP [...]
Dshi_3230 protein networkhttps://string-db.org/network/398580.Dshi_3230Hypothetical protein.
Dshi_3231 protein networkhttps://string-db.org/network/398580.Dshi_3231rsp:RSP_1458 putative DNA repair enzyme.
Dshi_3232 protein networkhttps://string-db.org/network/398580.Dshi_3232KEGG: sil:SPO3807 hypothetical protein.
Dshi_3233 protein networkhttps://string-db.org/network/398580.Dshi_3233PFAM: NLP/P60 protein KEGG: jan:Jann_0105 NLP/P60.
pepA2 protein networkhttps://string-db.org/network/398580.Dshi_3234PFAM: peptidase M17 leucyl aminopeptidase domain protein KEGG: sil:SPO3717 cytosol aminopeptidase family protein; (LAP) (Leucyl aminopeptidase).
Dshi_3235 protein networkhttps://string-db.org/network/398580.Dshi_3235Hypothetical protein.
cynT protein networkhttps://string-db.org/network/398580.Dshi_3236Carbonate anhydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
Dshi_3237 protein networkhttps://string-db.org/network/398580.Dshi_3237PFAM: protein of unknown function DUF897 KEGG: jan:Jann_0109 protein of unknown function DUF897.
Dshi_3238 protein networkhttps://string-db.org/network/398580.Dshi_3238KEGG: jan:Jann_0110 hypothetical protein.
Dshi_3239 protein networkhttps://string-db.org/network/398580.Dshi_3239KEGG: sil:SPO3714 hypothetical protein.
asd protein networkhttps://string-db.org/network/398580.Dshi_3240Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the as [...]
lpcC protein networkhttps://string-db.org/network/398580.Dshi_3241Lipopolysaccharide core biosynthesis mannosyltransferase; PFAM: glycosyl transferase group 1 KEGG: pde:Pden_2773 glycosyl transferase, group 1;rde:RD1_3309 lpcC;lipopolysaccharide core biosynthes [...]
Dshi_3242 protein networkhttps://string-db.org/network/398580.Dshi_3242PFAM: protein of unknown function DUF404; protein of unknown function DUF407 KEGG: sit:TM1040_2114 protein of unknown function DUF404; DUF407.
Dshi_3243 protein networkhttps://string-db.org/network/398580.Dshi_3243PFAM: protein of unknown function DUF403 KEGG: jan:Jann_2677 protein of unknown function DUF403.
Dshi_3244 protein networkhttps://string-db.org/network/398580.Dshi_3244Putative transglutaminase-like superfamily protein; PFAM: transglutaminase domain protein; transglutaminase domain protein KEGG: hne:HNE_2679 transglutaminase family protein.
Dshi_3245 protein networkhttps://string-db.org/network/398580.Dshi_3245Putative proteasome-type protease; PFAM: 20S proteasome A and B subunits KEGG: rde:RD1_4009 proteasome-type protease, putative.
fliI protein networkhttps://string-db.org/network/398580.Dshi_3246Flagellum-specific ATP synthase; KEGG: rsq:Rsph17025_2599 ATPase, FliI/YscN family TIGRFAM: ATPase, FliI/YscN family PFAM: H+transporting two-sector ATPase alpha/beta subunit central region.
flgB protein networkhttps://string-db.org/network/398580.Dshi_3247Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
flgC protein networkhttps://string-db.org/network/398580.Dshi_3248TIGRFAM: flagellar basal-body rod protein FlgC PFAM: flagellar basal body rod protein KEGG: sit:TM1040_2964 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins [...]
fliE protein networkhttps://string-db.org/network/398580.Dshi_3249PRK fliE, flagellar hook-basal body protein FliE PFAM: FliE, Flagellar hook-basal body complex protein FliE.
fliQ protein networkhttps://string-db.org/network/398580.Dshi_3250Swissprot: P74931 Flagellar biosynthetic protein fliQ PFAM: export protein FliQ family 3 KEGG: pde:Pden_2113 export protein FliQ, family 3.
flgF protein networkhttps://string-db.org/network/398580.Dshi_3251Swissprot: Q06171 Flagellar basal-body rod protein flgF PFAM: flagellar basal body rod protein KEGG: jan:Jann_4194 flagellar basal body rod protein; Belongs to the flagella basal body rod protein [...]
flgG protein networkhttps://string-db.org/network/398580.Dshi_3252TIGRFAM: flagellar basal-body rod protein FlgG PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein KEGG: rde:RD1_0258 flagellar basal-body rod protein FlgG; [...]
flgA protein networkhttps://string-db.org/network/398580.Dshi_3253Flagellar basal body P-ring biosynthesis protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P [...]
flgH protein networkhttps://string-db.org/network/398580.Dshi_3254Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
fliL1 protein networkhttps://string-db.org/network/398580.Dshi_3255Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
flhB protein networkhttps://string-db.org/network/398580.Dshi_3256Swissprot: O54243 flagellar biosynthesis protein FlhB KEGG: sil:SPO0172 flagellar biosynthetic protein FlhB.
fliR protein networkhttps://string-db.org/network/398580.Dshi_3257Flagellar biosynthesis protein FliR; PFAM: type III secretion system inner membrane R protein KEGG: jan:Jann_4187 flagellar biosynthetic protein FliR.
flhA protein networkhttps://string-db.org/network/398580.Dshi_3258Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs [...]
Dshi_3259 protein networkhttps://string-db.org/network/398580.Dshi_3259KEGG: rsh:Rsph17029_2977 hypothetical protein.
motA protein networkhttps://string-db.org/network/398580.Dshi_3260PRK: flagellar motor protein MotA. KEGG: sil:SPO0203 chemotaxis protein MotA; motility protein A.
Dshi_3261 protein networkhttps://string-db.org/network/398580.Dshi_3261KEGG: rsh:Rsph17029_2975 hypothetical protein.
Dshi_3262 protein networkhttps://string-db.org/network/398580.Dshi_3262KEGG: rde:RD1_0271 hypothetical protein.
fliL2 protein networkhttps://string-db.org/network/398580.Dshi_3263Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
fliF protein networkhttps://string-db.org/network/398580.Dshi_3264Flagellar MS-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
fliH protein networkhttps://string-db.org/network/398580.Dshi_3265COG: FliH, Flagellar biosynthesis/type III secretory pathway protein PRK: fliH, flagellar assembly protein H KEGG: rsh:Rsph17029_2971 putative flagellar biosynthesis/type III secretory pathway pr [...]
fliN protein networkhttps://string-db.org/network/398580.Dshi_3266Swissprot: Q03593 Flagellar motor switch protein fliN COG: Flagellar motor switch/type III secretory pathway protein.
fliP protein networkhttps://string-db.org/network/398580.Dshi_3267Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
Dshi_3268 protein networkhttps://string-db.org/network/398580.Dshi_3268PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein KEGG: rpe:RPE_1300 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; beta subunit.
Dshi_3269 protein networkhttps://string-db.org/network/398580.Dshi_3269PFAM: L-carnitine dehydratase/bile acid-inducible protein F KEGG: sit:TM1040_0389 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
Dshi_3270 protein networkhttps://string-db.org/network/398580.Dshi_3270Conserved hypothetical protein.
Dshi_3271 protein networkhttps://string-db.org/network/398580.Dshi_3271Hypothetical protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
Dshi_3272 protein networkhttps://string-db.org/network/398580.Dshi_3272KEGG: rde:RD1_2905 hypothetical protein.
Dshi_3273 protein networkhttps://string-db.org/network/398580.Dshi_3273Hypothetical protein.
Dshi_3274 protein networkhttps://string-db.org/network/398580.Dshi_3274Hypothetical protein.
aroC protein networkhttps://string-db.org/network/398580.Dshi_3275Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch poin [...]
petC protein networkhttps://string-db.org/network/398580.Dshi_3276PFAM: cytochrome c1 KEGG: rde:RD1_0565 cytochrome c1.
petB protein networkhttps://string-db.org/network/398580.Dshi_3277Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled [...]
petA protein networkhttps://string-db.org/network/398580.Dshi_3278Ubiquinol-cytochrome c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemica [...]
Dshi_3279 protein networkhttps://string-db.org/network/398580.Dshi_3279Putative glutathione S-transferase family protein; PFAM: Glutathione S-transferase domain KEGG: rsp:RSP_1397 glutathione S-transferase.
Dshi_3280 protein networkhttps://string-db.org/network/398580.Dshi_3280KEGG: rsq:Rsph17025_2805 hypothetical protein.
Dshi_3281 protein networkhttps://string-db.org/network/398580.Dshi_3281Putative endonuclease/exonuclease/phosphatase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; Endonuclease/exonuclease/phosphatase KEGG: syn:sll0656 extracellular nuclease.
fdhD protein networkhttps://string-db.org/network/398580.Dshi_3282Putative formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofact [...]
mobA protein networkhttps://string-db.org/network/398580.Dshi_3283Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine din [...]
moeA3 protein networkhttps://string-db.org/network/398580.Dshi_3284Putative molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
trx protein networkhttps://string-db.org/network/398580.Dshi_3285PFAM: Thioredoxin domain KEGG: rde:RD1_0213 thioredoxin, putative.
ccdA protein networkhttps://string-db.org/network/398580.Dshi_3286PFAM: cytochrome c biogenesis protein transmembrane region KEGG: rde:RD1_0214 cytochrome c biogenesis protein.
Dshi_3287 protein networkhttps://string-db.org/network/398580.Dshi_3287PFAM: protein of unknown function DUF6 transmembrane KEGG: sit:TM1040_2802 protein of unknown function DUF6, transmembrane; rde:RD1_0601 hypothetical protein; TMH; 2x DUF6.
hup protein networkhttps://string-db.org/network/398580.Dshi_3288PFAM: histone family protein DNA-binding protein KEGG: rde:RD1_0603 DNA-binding protein HU; Belongs to the bacterial histone-like protein family.
amn protein networkhttps://string-db.org/network/398580.Dshi_3289AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
Dshi_3290 protein networkhttps://string-db.org/network/398580.Dshi_3290KEGG: sil:SPO3747 hypothetical protein.
Dshi_3291 protein networkhttps://string-db.org/network/398580.Dshi_3291Hypothetical protein; KEGG: jan:Jann_0273 NAD-dependent epimerase/dehydratase rde:RD1_0614 hypothetical protein.
Dshi_3292 protein networkhttps://string-db.org/network/398580.Dshi_3292Hypothetical protein.
Dshi_3293 protein networkhttps://string-db.org/network/398580.Dshi_3293Hypothetical protein.
dxs1 protein networkhttps://string-db.org/network/398580.Dshi_32941-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (D [...]
ispA protein networkhttps://string-db.org/network/398580.Dshi_3295Geranyltranstransferase; PFAM: Polyprenyl synthetase KEGG: rde:RD1_0549 ispA; geranyltranstransferase; FPP synthase; Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
xseB protein networkhttps://string-db.org/network/398580.Dshi_3296Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleo [...]
Dshi_3297 protein networkhttps://string-db.org/network/398580.Dshi_3297PFAM: histone deacetylase superfamily KEGG: rsp:RSP_1137 histone deacetylase family protein.
Dshi_3298 protein networkhttps://string-db.org/network/398580.Dshi_3298KEGG: mlo:mlr2044 hypothetical protein.
petR protein networkhttps://string-db.org/network/398580.Dshi_3299Swissprot: Protein petR PFAM: response regulator receiver; transcriptional regulator domain protein.
Dshi_3300 protein networkhttps://string-db.org/network/398580.Dshi_3300PFAM: regulatory protein MarR KEGG: rde:RD1_0552 transcriptional regulator, MarR family; MarR family.
ilvE protein networkhttps://string-db.org/network/398580.Dshi_3301Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
Dshi_3302 protein networkhttps://string-db.org/network/398580.Dshi_3302KEGG: atc:AGR_L_2414 hypothetical protein.
Dshi_3303 protein networkhttps://string-db.org/network/398580.Dshi_3303REFSEQ: ref|ZP_01012112.1 membrane protein, putative [Rhodobacterale bacterium].
Dshi_3304 protein networkhttps://string-db.org/network/398580.Dshi_3304KEGG: sil:SPO2058 hypothetical protein.
Dshi_3305 protein networkhttps://string-db.org/network/398580.Dshi_3305Protein of unknown function DUF6; PFAM: integral membrane protein DUF6 KEGG: jan:Jann_3870 protein of unknown function DUF6, transmembrane; transmembrane.
Dshi_3306 protein networkhttps://string-db.org/network/398580.Dshi_3306Hypothetical protein.
queG protein networkhttps://string-db.org/network/398580.Dshi_3307Putative 4Fe-4S binding domain protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA [...]
gst1 protein networkhttps://string-db.org/network/398580.Dshi_3308PFAM: Glutathione S-transferase domain KEGG: rsq:Rsph17025_2783 glutathione S-transferase, N-terminal domain.
mtgA protein networkhttps://string-db.org/network/398580.Dshi_3309Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 fam [...]
rssA protein networkhttps://string-db.org/network/398580.Dshi_3310Patatin-like phospholipase; COG: RssA, Predicted esterase of the alpha-beta hydrolase superfamily PFAM: Patatin-like phospholipase.
rlmN protein networkhttps://string-db.org/network/398580.Dshi_3311Radical SAM enzyme; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading ste [...]
Dshi_3312 protein networkhttps://string-db.org/network/398580.Dshi_3312KEGG: jan:Jann_2393 hypothetical protein.
Dshi_3313 protein networkhttps://string-db.org/network/398580.Dshi_3313KEGG: rsh:Rsph17029_0081 hypothetical protein.
Dshi_3314 protein networkhttps://string-db.org/network/398580.Dshi_3314KEGG: rde:RD1_0193 hypothetical protein.
Dshi_3315 protein networkhttps://string-db.org/network/398580.Dshi_3315Hypothetical protein.
serB protein networkhttps://string-db.org/network/398580.Dshi_3316KEGG: sil:SPO3353 phosphoserine phosphatase TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like) PFAM: Haloacid dehalogenase domain protein hydrolase.
serC protein networkhttps://string-db.org/network/398580.Dshi_3317Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
serA1 protein networkhttps://string-db.org/network/398580.Dshi_3318TIGRFAM: D-3-phosphoglycerate dehydrogenase PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogen [...]
Dshi_3319 protein networkhttps://string-db.org/network/398580.Dshi_3319PFAM: metallophosphoesterase KEGG: rsq:Rsph17025_0011 metallophosphoesterase.
Dshi_3320 protein networkhttps://string-db.org/network/398580.Dshi_3320KEGG: rde:RD1_1295 hypothetical protein.
Dshi_3321 protein networkhttps://string-db.org/network/398580.Dshi_3321PFAM: CreA family protein KEGG: rsh:Rsph17029_1167 CreA family protein.
Dshi_3322 protein networkhttps://string-db.org/network/398580.Dshi_3322PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator KEGG: sil:SPO3684 transcriptional regulator, LacI family; LacI family.
Dshi_3323 protein networkhttps://string-db.org/network/398580.Dshi_3323PFAM: regulatory protein GntR HTH; GntR domain protein KEGG: jan:Jann_1164 transcriptional regulator, GntR family; GntR family.
dld2 protein networkhttps://string-db.org/network/398580.Dshi_3324D-lactate dehydrogenase; PFAM: FAD binding domain, FAD linked oxidases KEGG: jan:Jann_1163 D-lactate dehydrogenase (cytochrome).
sgaA1 protein networkhttps://string-db.org/network/398580.Dshi_3325Swissprot: Q56YA5 Serine--glyoxylate aminotransferase PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase KEGG: jan:Jann_1162 aminotransferase, class V; [...]
dctP3 protein networkhttps://string-db.org/network/398580.Dshi_3326TIGRFAM: TRAP dicarboxylate transporter, DctP subunit PFAM: TRAP dicarboxylate transporter- DctP subunit KEGG: pmu:PM1651 hypothetical E.coli; precursor.
dctQ1 protein networkhttps://string-db.org/network/398580.Dshi_3327PFAM: Tripartite ATP-independent periplasmic transporter DctQ component.
dctM4 protein networkhttps://string-db.org/network/398580.Dshi_3328TIGRFAM: TRAP dicarboxylate transporter, DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
Dshi_3329 protein networkhttps://string-db.org/network/398580.Dshi_3329PFAM: Enoyl-CoA hydratase/isomerase KEGG: acr:Acry_3420 enoyl-CoA hydratase/isomerase.
yfdW1 protein networkhttps://string-db.org/network/398580.Dshi_3330PFAM: CoA-transferase family III PRK: formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
bktB protein networkhttps://string-db.org/network/398580.Dshi_3331Beta-ketothiolase; KEGG: rde:RD1_0201 beta-ketothiolase TIGRFAM: acetyl-CoA acetyltransferase PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
Dshi_3332 protein networkhttps://string-db.org/network/398580.Dshi_3332Sensor histidine kinase/response regulator; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein KEGG: rde:RD1_0357 hybrid sensory histid [...]
Dshi_3333 protein networkhttps://string-db.org/network/398580.Dshi_3333PFAM: protein of unknown function DUF328 KEGG: sil:SPO0106 hypothetical protein; Belongs to the UPF0246 family.
recQ protein networkhttps://string-db.org/network/398580.Dshi_3334KEGG: rde:RD1_0359 ATP-dependent DNA helicase RecQ TIGRFAM: ATP-dependent DNA helicase RecQ PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase sup [...]
Dshi_3335 protein networkhttps://string-db.org/network/398580.Dshi_3335PFAM: protein of unknown function YGGT KEGG: sil:SPO0122 YGGT family protein; transmembrane.
Dshi_3336 protein networkhttps://string-db.org/network/398580.Dshi_3336KEGG: sit:TM1040_2661 hypothetical protein.
Dshi_3337 protein networkhttps://string-db.org/network/398580.Dshi_3337PFAM: major facilitator superfamily MFS_1 KEGG: jan:Jann_0343 major facilitator superfamily MFS_1.
mepA protein networkhttps://string-db.org/network/398580.Dshi_3338PFAM: peptidase penicillin-insensitive murein endopeptidase KEGG: rsh:Rsph17029_0031 peptidase U6, penicillin-insensitive murein endopeptidase.
Dshi_3339 protein networkhttps://string-db.org/network/398580.Dshi_3339KEGG: rsq:Rsph17025_0022 hypothetical protein.
Dshi_3340 protein networkhttps://string-db.org/network/398580.Dshi_3340Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A [...]
rimK protein networkhttps://string-db.org/network/398580.Dshi_3341Ribosomal protein S6 modification protein; TIGRFAM: alpha-L-glutamate ligase, RimK family PFAM: RimK domain protein ATP-grasp KEGG: rde:RD1_2956 ribosomal protein S6 modification protein (C termi [...]
Dshi_3342 protein networkhttps://string-db.org/network/398580.Dshi_3342PFAM: Class I peptide chain release factor KEGG: rde:RD1_0366 peptidyl-tRNA hydrolase, putative.
Dshi_3343 protein networkhttps://string-db.org/network/398580.Dshi_3343PFAM: aminotransferase class-III KEGG: sil:SPOA0354 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
Dshi_3344 protein networkhttps://string-db.org/network/398580.Dshi_3344PFAM: aminoglycoside phosphotransferase.
pncB protein networkhttps://string-db.org/network/398580.Dshi_3345Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase [...]
Dshi_3346 protein networkhttps://string-db.org/network/398580.Dshi_3346KEGG: sil:SPO0094 sensory box sensor histidine kinase/response regulator TIGRFAM: PAS sensor protein PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase [...]
pncA protein networkhttps://string-db.org/network/398580.Dshi_3347Nicotinamidase; KEGG: jan:Jann_0014 nicotinamidase.
Dshi_3348 protein networkhttps://string-db.org/network/398580.Dshi_3348PFAM: Rhodanese domain protein KEGG: pde:Pden_0850 rhodanese domain protein; Belongs to the UPF0176 family.
ybbB protein networkhttps://string-db.org/network/398580.Dshi_3349PRK tRNA 2-selenouridine synthase; Belongs to the SelU family.
selD protein networkhttps://string-db.org/network/398580.Dshi_3350Selenide, water dikinase; TIGRFAM: selenium donor protein PFAM: AIR synthase related protein domain protein KEGG: sil:SPO2899 selenide,water dikinase, putative; (Selenophosphate synthetase) (Sele [...]
Dshi_3351 protein networkhttps://string-db.org/network/398580.Dshi_3351KEGG: bbt:BBta_2726 putative membrane protein of unknown function.
Dshi_3352 protein networkhttps://string-db.org/network/398580.Dshi_3352KEGG: jan:Jann_0255 hypothetical protein.
Dshi_3353 protein networkhttps://string-db.org/network/398580.Dshi_3353PFAM: Predicted permease KEGG: rsq:Rsph17025_3021 protein of unknown function DUF214; protein of unknown function DUF214.
Dshi_3354 protein networkhttps://string-db.org/network/398580.Dshi_3354PFAM: FtsE, Predicted ATPase involved in cell division.
gyrB protein networkhttps://string-db.org/network/398580.Dshi_3355DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in a [...]
Dshi_3356 protein networkhttps://string-db.org/network/398580.Dshi_3356PFAM: Transposase KEGG: mag:amb0646 insertion element ISR1 hypothetical 10 kDa protein A3.
Dshi_3357 protein networkhttps://string-db.org/network/398580.Dshi_3357PFAM: Integrase catalytic region KEGG: bbt:BBta_7691 integrase, catalytic domain.
Dshi_3358 protein networkhttps://string-db.org/network/398580.Dshi_3358PFAM: protein of unknown function DUF1217 KEGG: sil:SPO3456 flagellar protein, putative.
flbT protein networkhttps://string-db.org/network/398580.Dshi_3359PRK: flbT, flagellar biosynthesis repressor FlbT PFAM: flagellar FlbT family protein KEGG: sit:TM1040_2972 flagellar FlbT.
flaF protein networkhttps://string-db.org/network/398580.Dshi_3360PRK: flaF, flagellar biosynthesis regulatory protein FlaF PFAM: flagellar FlaF family protein KEGG: sil:SPO3458 flagellar protein FlaF, putative.
fliC protein networkhttps://string-db.org/network/398580.Dshi_3361Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
Dshi_3362 protein networkhttps://string-db.org/network/398580.Dshi_3362Hypothetical protein.
Dshi_3363 protein networkhttps://string-db.org/network/398580.Dshi_3363Putative flagellar protein FlgJ; PRK: flgJ, peptidoglycan hydrolase KEGG: sit:TM1040_2976 flagellar protein FlgJ, putative.
Dshi_3364 protein networkhttps://string-db.org/network/398580.Dshi_3364PFAM: flagellar hook-length control protein.
flgD protein networkhttps://string-db.org/network/398580.Dshi_3365Flagellar hook capping protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
Dshi_3366 protein networkhttps://string-db.org/network/398580.Dshi_3366PFAM: Phosphotransferase enzyme family Genbank: gb|ABF65711.1 aminoglycoside phosphotransferase (Silicibacter sp.).
ubiB protein networkhttps://string-db.org/network/398580.Dshi_33672-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfa [...]
ubiE protein networkhttps://string-db.org/network/398580.Dshi_33682-polyprenylmethoxybenozoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoq [...]
mutM protein networkhttps://string-db.org/network/398580.Dshi_3369formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a [...]
Dshi_3370 protein networkhttps://string-db.org/network/398580.Dshi_3370PFAM: Enoyl-CoA hydratase/isomerase KEGG: rsh:Rsph17029_0009 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
rpsT protein networkhttps://string-db.org/network/398580.Dshi_3371Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
yibN protein networkhttps://string-db.org/network/398580.Dshi_3372Rhodanese-related sulfurtransferase; PFAM: Rhodanese Homology Domain superfamily, subgroup 1 COG: PspE, Rhodanese-related sulfurtransferase.
dnaA protein networkhttps://string-db.org/network/398580.Dshi_3373Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-s [...]
dnaN protein networkhttps://string-db.org/network/398580.Dshi_3374DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loadin [...]
recF protein networkhttps://string-db.org/network/398580.Dshi_3375DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-strand [...]
flgI protein networkhttps://string-db.org/network/398580.Dshi_3376Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
flgL protein networkhttps://string-db.org/network/398580.Dshi_3377Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
flgK protein networkhttps://string-db.org/network/398580.Dshi_3378TIGRFAM: flagellar hook-associated protein FlgK PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein KEGG: rde:RD1_0580 flagellar hook-associated protein Flg [...]
flgE protein networkhttps://string-db.org/network/398580.Dshi_3379PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein Swissprot: Flagellar hook protein flgE.
motB protein networkhttps://string-db.org/network/398580.Dshi_3380PRK: motB, flagellar motor protein MotB COG: MotB, Flagellar motor protein REFSEQ: chemotaxis protein MotB.
Dshi_3381 protein networkhttps://string-db.org/network/398580.Dshi_3381Hypothetical protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein KEGG: rde:RD1_2329 outer membrane protein, putative.
Dshi_3382 protein networkhttps://string-db.org/network/398580.Dshi_3382PFAM: protein of unknown function DUF490 KEGG: jan:Jann_0244 protein of unknown function DUF490.
Dshi_3383 protein networkhttps://string-db.org/network/398580.Dshi_3383PFAM: Rhomboid family protein KEGG: jan:Jann_4233 rhomboid-like protein.
epsH protein networkhttps://string-db.org/network/398580.Dshi_3384TIGRFAM: eight transmembrane protein EpsH; Methanolan biosynthesis EpsI KEGG: jan:Jann_4271 hypothetical protein.
Dshi_3385 protein networkhttps://string-db.org/network/398580.Dshi_3385PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein SMART: Tetratricopeptide domain protein KEGG: jan:Jann_4236 tetratricopeptide TPR_2.
wcaJ protein networkhttps://string-db.org/network/398580.Dshi_3386Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase KEGG: rde:RD1_B0024 bacterial sugar transferase; Galactosyl-P-P-undecaprenol synthetase.
exeA protein networkhttps://string-db.org/network/398580.Dshi_3387Type II secretory pathway; REFSEQ: general secretion pathway protein A [Roseobacter denitrificans] COG: Type II secretory pathway, component ExeA (predicted ATPase) SMART: AAA ATPase KEGG: jan:Ja [...]
Dshi_3388 protein networkhttps://string-db.org/network/398580.Dshi_3388TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily PFAM: lipopolysaccharide biosynthesis protein KEGG: jan:Jann_4239 lipopolysaccharide biosynthesis; PEP-CTERM lo [...]
Dshi_3389 protein networkhttps://string-db.org/network/398580.Dshi_3389KEGG: jan:Jann_4240 ATPases involved in chromosome partitioning-like.
Dshi_3390 protein networkhttps://string-db.org/network/398580.Dshi_3390PFAM: metallophosphoesterase KEGG: jan:Jann_3688 metallophosphoesterase.
Dshi_3391 protein networkhttps://string-db.org/network/398580.Dshi_3391PFAM: beta-lactamase domain protein KEGG: rde:RD1_3791 metallo-beta-lactamase family protein, putative.
Dshi_3392 protein networkhttps://string-db.org/network/398580.Dshi_3392Hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase KEGG: rde:RD1_3790 hypothetical protein.
leuB protein networkhttps://string-db.org/network/398580.Dshi_3393PFAM: isocitrate/isopropylmalate dehydrogenase KEGG: rde:RD1_3789 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; Beta-IPM dehydrogenase.
Dshi_3394 protein networkhttps://string-db.org/network/398580.Dshi_3394PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding KEGG: rde:RD1_3788 probable NADH-dependent dyhydrogenase.
dctM3 protein networkhttps://string-db.org/network/398580.Dshi_3395PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit KEGG: cps:CPS_1266 putative C4-dicarboxylate transporter family protein, DctM subunit.
dctQ2 protein networkhttps://string-db.org/network/398580.Dshi_3396PFAM: Tripartite ATP-independent periplasmic transporter DctQ component KEGG: maq:Maqu_0086 tripartite ATP-independent periplasmic transporter, DctQ component.
dctP2 protein networkhttps://string-db.org/network/398580.Dshi_3397TRAP transporter - DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
orfB protein networkhttps://string-db.org/network/398580.Dshi_3398ISSpo6; KEGG: nha:Nham_4013 ISSpo6, transposase OrfB; transposase OrfB.
orfA protein networkhttps://string-db.org/network/398580.Dshi_3399ISSpo6; KEGG: nha:Nham_4014 ISSpo6, transposase orf A; transposase OrfA.
ubiG2 protein networkhttps://string-db.org/network/398580.Dshi_34003-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Belongs to the methyltransferase superfamily. UbiG [...]
Dshi_3401 protein networkhttps://string-db.org/network/398580.Dshi_3401KEGG: rde:RD1_0738 hypothetical protein.
Dshi_3402 protein networkhttps://string-db.org/network/398580.Dshi_3402KEGG: rsp:RSP_0230 neutral zinc metallopeptidase CD: Zinc-dependent metalloprotease, serralysin_like subfamily.
Dshi_3403 protein networkhttps://string-db.org/network/398580.Dshi_3403PFAM: AMP-dependent synthetase and ligase KEGG: rde:RD1_1106 putative long chain fatty acid acyl-CoA ligase.
Dshi_3404 protein networkhttps://string-db.org/network/398580.Dshi_3404KEGG: mpt:Mpe_A3536 hypothetical protein.
dsbA2 protein networkhttps://string-db.org/network/398580.Dshi_3405Thiol:disulfide interchange protein DsbA; PFAM: DSBA oxidoreductase.
Dshi_3406 protein networkhttps://string-db.org/network/398580.Dshi_3406PFAM: ErfK/YbiS/YcfS/YnhG family protein KEGG: mes:Meso_4112 ErfK/YbiS/YcfS/YnhG.
dsbD protein networkhttps://string-db.org/network/398580.Dshi_3407KEGG: mag:amb3382 thiol:disulfide interchange protein DsbD 1 precursor.
cycH protein networkhttps://string-db.org/network/398580.Dshi_3408Cytochrome c-type biogenesis protein CycH; PFAM: TPR repeat-containing protein SMART: Tetratricopeptide domain protein KEGG: ret:RHE_CH01289 cytochrome-C-type biogenesis protein.
cycL protein networkhttps://string-db.org/network/398580.Dshi_3409Cytochrome c-type biogenesis protein CycL; Possible subunit of a heme lyase.
dsbE protein networkhttps://string-db.org/network/398580.Dshi_3410TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein KEGG: mes:Meso_3362 peripl [...]
cycK protein networkhttps://string-db.org/network/398580.Dshi_3411TIGRFAM: cytochrome c-type biogenesis protein CcmF PFAM: cytochrome c assembly protein KEGG: mag:amb4200 cytochrome c biogenesis factor.
Dshi_3412 protein networkhttps://string-db.org/network/398580.Dshi_3412PFAM: protein of unknown function DUF55.
Dshi_3413 protein networkhttps://string-db.org/network/398580.Dshi_3413YCII-related domain protein; PFAM: YCII-related KEGG: rde:RD1_0468 YCII-related domain protein.
gpsA protein networkhttps://string-db.org/network/398580.Dshi_3414PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein KEGG: rsh:Rsph17029_0162 glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
gcp protein networkhttps://string-db.org/network/398580.Dshi_3415O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in t [...]
hemD protein networkhttps://string-db.org/network/398580.Dshi_3416uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
Dshi_3417 protein networkhttps://string-db.org/network/398580.Dshi_3417KEGG: jan:Jann_4082 hypothetical protein.
Dshi_3418 protein networkhttps://string-db.org/network/398580.Dshi_3418PFAM: HemY domain protein.
Dshi_3419 protein networkhttps://string-db.org/network/398580.Dshi_3419PFAM: Amidase KEGG: rsq:Rsph17025_3870 2-alkenal reductase.
glpK protein networkhttps://string-db.org/network/398580.Dshi_3420Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
apr protein networkhttps://string-db.org/network/398580.Dshi_3421Subtilisin DY; Hydrolysis of proteins with broad specificity for peptide bonds, and a preference for a large uncharged residue in P1. Hydrolyses peptide amides.
Dshi_3422 protein networkhttps://string-db.org/network/398580.Dshi_3422No hits to other proteins.
rpoE1 protein networkhttps://string-db.org/network/398580.Dshi_3423TIGRFAM: RNA polymerase sigma-70 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; (sigma-70 factor family, ECF subfamily).
Dshi_3424 protein networkhttps://string-db.org/network/398580.Dshi_3424Hypothetical protein; No significant BLAST hits, GC frame plot ok.
Dshi_3425 protein networkhttps://string-db.org/network/398580.Dshi_3425KEGG: sil:SPO3859 hypothetical protein.
ahcY protein networkhttps://string-db.org/network/398580.Dshi_3426Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
rafI protein networkhttps://string-db.org/network/398580.Dshi_3427Lipopolysaccharide 1; PFAM: glycosyl transferase family 8 KEGG: rde:RD1_0464 lipopolysaccharide 1,3-galactosyltransferase, putative; 3-galactosyltransferase, (Lipopolysaccharide 3-alpha-galactosy [...]
Dshi_3428 protein networkhttps://string-db.org/network/398580.Dshi_3428No hits to other proteins.
Dshi_3429 protein networkhttps://string-db.org/network/398580.Dshi_3429PFAM: HD domain KEGG: sit:TM1040_2836 metal dependent phosphohydrolase.
regA protein networkhttps://string-db.org/network/398580.Dshi_3430PFAM: response regulator receiver KEGG: sil:SPO3865 photosynthetic apparatus regulatory protein RegA; Response regulator PrrA.
senC protein networkhttps://string-db.org/network/398580.Dshi_3431PFAM: electron transport protein SCO1/SenC KEGG: sit:TM1040_2839 electron transport protein SCO1/SenC.
regB protein networkhttps://string-db.org/network/398580.Dshi_3432Sensor histidine kinase RegB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein KEGG: sil:SPO3867 sensor histidine kinase RegB; Protein PrrB.
Dshi_3433 protein networkhttps://string-db.org/network/398580.Dshi_3433Putative PAS/PAC sensor protein; TIGRFAM: PAS domain S-box REFSEQ: PAS domain containing protein.
Dshi_3434 protein networkhttps://string-db.org/network/398580.Dshi_3434PFAM: protein of unknown function UPF0079 KEGG: rsq:Rsph17025_2955 protein of unknown function UPF0079.
Dshi_3435 protein networkhttps://string-db.org/network/398580.Dshi_3435PFAM: aminoglycoside phosphotransferase KEGG: rsh:Rsph17029_0175 aminoglycoside phosphotransferase.
Dshi_3436 protein networkhttps://string-db.org/network/398580.Dshi_3436PFAM: Nucleotidyl transferase KEGG: pde:Pden_2796 nucleotidyl transferase.
addB protein networkhttps://string-db.org/network/398580.Dshi_3437TIGRFAM: Double-strand break repair protein AddB KEGG: rsq:Rsph17025_2952 RecB family exonuclease-like protein PMID: 15547262.
addA protein networkhttps://string-db.org/network/398580.Dshi_3438TIGRFAM: Double-strand break repair helicase AddA PFAM: UvrD/REP helicase KEGG: rsp:RSP_1527 helicase, UvrD/Rep family PMID: 15547262; Belongs to the helicase family. UvrD subfamily.
trxA1 protein networkhttps://string-db.org/network/398580.Dshi_3439TIGRFAM: thioredoxin PFAM: Thioredoxin domain KEGG: rde:RD1_0451 thioredoxin; Trx; Belongs to the thioredoxin family.
hslV protein networkhttps://string-db.org/network/398580.Dshi_3440ATP-dependent HslUV protease; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
hslU protein networkhttps://string-db.org/network/398580.Dshi_3441ATP-dependent HslUV protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential [...]
Dshi_3442 protein networkhttps://string-db.org/network/398580.Dshi_3442PFAM: major facilitator superfamily MFS_1 KEGG: sit:TM1040_0930 major facilitator superfamily MFS_1.
Dshi_3443 protein networkhttps://string-db.org/network/398580.Dshi_3443PFAM: Smr protein/MutS2 KEGG: rde:RD1_0446 Smr domain protein.
mltA protein networkhttps://string-db.org/network/398580.Dshi_3444Membrane-bound lytic murein transglycosylase A; PFAM: MltA domain protein; 3D domain protein KEGG: jan:Jann_0190 MltA.
Dshi_3445 protein networkhttps://string-db.org/network/398580.Dshi_3445PFAM: import inner membrane translocase subunit Tim44 KEGG: jan:Jann_0191 import inner membrane translocase, subunit Tim44; subunit Tim44.
fxsA protein networkhttps://string-db.org/network/398580.Dshi_3446PFAM: FxsA cytoplasmic membrane protein KEGG: sil:SPO3887 FxsA.
secB protein networkhttps://string-db.org/network/398580.Dshi_3447Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, [...]
dnaQ1 protein networkhttps://string-db.org/network/398580.Dshi_3448DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing funct [...]
coaE protein networkhttps://string-db.org/network/398580.Dshi_3449dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
aroE protein networkhttps://string-db.org/network/398580.Dshi_3450Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshiki [...]
maf protein networkhttps://string-db.org/network/398580.Dshi_3451Septum formation protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic a [...]
Dshi_3452 protein networkhttps://string-db.org/network/398580.Dshi_3452PFAM: Uncharacterized protein family (UPF0093) Swissprot: UPF0093 membrane protein.
rho protein networkhttps://string-db.org/network/398580.Dshi_3453Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and re [...]
trmE protein networkhttps://string-db.org/network/398580.Dshi_3454tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain t [...]
gidA protein networkhttps://string-db.org/network/398580.Dshi_3455tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain t [...]
gidB protein networkhttps://string-db.org/network/398580.Dshi_3456Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
parA1 protein networkhttps://string-db.org/network/398580.Dshi_3457Chromosome partitioning protein ParA; PFAM: ParA family ATPase.
parB protein networkhttps://string-db.org/network/398580.Dshi_3458TIGRFAM: parB-like partition protein PFAM: ParB domain protein nuclease KEGG: rsp:RSP_1225 ParB-like partition protein; Belongs to the ParB family.
Dshi_3459 protein networkhttps://string-db.org/network/398580.Dshi_3459PFAM: protein of unknown function DUF454 KEGG: rsh:Rsph17029_2886 protein of unknown function DUF454.
hemN3 protein networkhttps://string-db.org/network/398580.Dshi_3460Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds [...]
Dshi_3461 protein networkhttps://string-db.org/network/398580.Dshi_3461PFAM: Endoribonuclease L-PSP KEGG: rsp:RSP_1223 putative translation initiation inhibitor, YjgF family / putative endoribonuclease L-PSP.
ham1 protein networkhttps://string-db.org/network/398580.Dshi_3462Nucleoside-triphosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleo [...]
rph protein networkhttps://string-db.org/network/398580.Dshi_3463Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucl [...]
hrcA protein networkhttps://string-db.org/network/398580.Dshi_3464Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
grpE protein networkhttps://string-db.org/network/398580.Dshi_3465Protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleot [...]
mutS protein networkhttps://string-db.org/network/398580.Dshi_3466DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase act [...]
maeB protein networkhttps://string-db.org/network/398580.Dshi_3467NADP-dependent malic enzyme; PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding KEGG: sit:TM1040_2877 malate dehydrogenase (oxaloacetate decarboxy [...]
msrA1 protein networkhttps://string-db.org/network/398580.Dshi_3468Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methioni [...]
Dshi_3469 protein networkhttps://string-db.org/network/398580.Dshi_3469REFSEQ: putative branched-chain amino acid aminotransferase.
Dshi_3470 protein networkhttps://string-db.org/network/398580.Dshi_3470PFAM: peptidase M48 Ste24p.
Dshi_3471 protein networkhttps://string-db.org/network/398580.Dshi_3471PFAM: protein of unknown function DUF898 transmembrane KEGG: sme:SMc00782 hypothetical protein.
argG protein networkhttps://string-db.org/network/398580.Dshi_3472TIGRFAM: argininosuccinate synthase PFAM: argininosuccinate synthase KEGG: rde:RD1_0417 argininosuccinate synthase; Citrulline--aspartate ligase; Belongs to the argininosuccinate synthase family. [...]
ilvA protein networkhttps://string-db.org/network/398580.Dshi_3473Threonine dehydratase biosynthetic; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine a [...]
pcaB protein networkhttps://string-db.org/network/398580.Dshi_3474TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase PMID 15006791; (3-carboxymuconate lactonizing enzyme) (CMLE).
Dshi_3475 protein networkhttps://string-db.org/network/398580.Dshi_3475PFAM: protein of unknown function DUF849 KEGG: jan:Jann_4165 protein of unknown function DUF849.
pcaG protein networkhttps://string-db.org/network/398580.Dshi_3476KEGG: bmb:BruAb2_0580 protocatechuate 3,4-dioxygenase, alpha subunit TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit PFAM: intradiol ring-cleavage dioxygenase; (3,4-PCD).
pcaH protein networkhttps://string-db.org/network/398580.Dshi_3477TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit PFAM: intradiol ring-cleavage dioxygenase KEGG: sit:TM1040_0558 protocatechuate 3,4-dioxygenase, beta subunit; (3,4-PCD).
pcaC protein networkhttps://string-db.org/network/398580.Dshi_3478TIGRFAM: 4-carboxymuconolactone decarboxylase PFAM: Carboxymuconolactone decarboxylase KEGG: sit:TM1040_0559 4-carboxymuconolactone decarboxylase; CMD.
pobA protein networkhttps://string-db.org/network/398580.Dshi_3479P-hydroxybenzoate hydroxylase; KEGG: jan:Jann_4161 4-hydroxybenzoate 3-monooxygenase TIGRFAM: 4-hydroxybenzoate 3-monooxygenase PFAM: monooxygenase FAD-binding; PHBH; 4-hydroxybenzoate 3-monooxyg [...]
modE protein networkhttps://string-db.org/network/398580.Dshi_3480Transcriptional regulator ModE; PFAM: regulatory protein LysR KEGG: pde:Pden_2664 putative transcriptional regulator, ModE family PMID 8550508.
modA protein networkhttps://string-db.org/network/398580.Dshi_3481TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein PFAM: extracellular solute-binding protein family 1 KEGG: rsp:RSP_3871 ABC molybdate transporter, periplasmic binding pr [...]
modB protein networkhttps://string-db.org/network/398580.Dshi_3482Molybdenum transport system permease protein modB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the me [...]
modC protein networkhttps://string-db.org/network/398580.Dshi_3483Molybdenum import ATP-binding protein modC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC t [...]
Dshi_3484 protein networkhttps://string-db.org/network/398580.Dshi_3484PFAM: Hpt domain protein KEGG: sit:TM1040_2886 Hpt protein.
Dshi_3485 protein networkhttps://string-db.org/network/398580.Dshi_3485PFAM: response regulator receiver; Stage II sporulation E family protein SMART: protein phosphatase 2C domain protein KEGG: rde:RD1_0413 response regulator.
Dshi_3486 protein networkhttps://string-db.org/network/398580.Dshi_3486PFAM: NUDIX hydrolase KEGG: rsp:RSP_1208 NUDIX hydrolase.
hslO protein networkhttps://string-db.org/network/398580.Dshi_348733 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial [...]
Dshi_3488 protein networkhttps://string-db.org/network/398580.Dshi_3488PFAM: NUDIX hydrolase KEGG: sit:TM1040_2890 NUDIX hydrolase.
cca protein networkhttps://string-db.org/network/398580.Dshi_3489CCA-adding enzyme; PFAM: Polynucleotide adenylyltransferase region KEGG: sil:SPO0026 polyA polymerase family protein; tRNA-NT; tRNA CCA-pyrophosphorylase; tRNA adenylyl-/cytidylyl-transferase; tR [...]
Dshi_3490 protein networkhttps://string-db.org/network/398580.Dshi_3490ATPase; PFAM: ABC transporter related SMART: AAA ATPase KEGG: sil:SPO0027 ABC transporter, transmembrane ATP-binding protein.
Dshi_3491 protein networkhttps://string-db.org/network/398580.Dshi_3491ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related SMART: AAA ATPase KEGG: rsq:Rsph17025_2641 ABC transporter related.
rumA protein networkhttps://string-db.org/network/398580.Dshi_3492PFAM: (Uracil-5)-methyltransferase KEGG: sil:SPO0029 23S rRNA (uracil-5-)-methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase [...]
Dshi_3493 protein networkhttps://string-db.org/network/398580.Dshi_3493Voltage-gated sodium channel; PFAM: Ion transport protein KEGG: rsq:Rsph17025_2848 ion transport protein REFSEQ: ref|ZP_01055369.1 voltage-gated sodium channel.
Dshi_3494 protein networkhttps://string-db.org/network/398580.Dshi_3494PFAM: ErfK/YbiS/YcfS/YnhG family protein KEGG: sil:SPO0031 ErfK/YbiS/YcfS/YnhG family protein PMID: 17098896.
Dshi_3495 protein networkhttps://string-db.org/network/398580.Dshi_3495PFAM: SCP-like extracellular KEGG: rsh:Rsph17029_2861 allergen V5/TPX-1 family protein.
Dshi_3496 protein networkhttps://string-db.org/network/398580.Dshi_3496PFAM: ErfK/YbiS/YcfS/YnhG family protein KEGG: rde:RD1_0402 ErfK/YbiS/YcfS/YnhG family protein PMID: 17098896.
hemH protein networkhttps://string-db.org/network/398580.Dshi_3498Protoheme ferro-lyase ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
Dshi_3499 protein networkhttps://string-db.org/network/398580.Dshi_3499SAM-dependent methyltransferase; KEGG: jan:Jann_0294 hypothetical protein PFAM Methyltransferase domain PMID: 17098896.
comF protein networkhttps://string-db.org/network/398580.Dshi_3500KEGG: sil:SPO0071 competence protein F, putative TIGR00201 comF family protein PMID 17098896.
crtA protein networkhttps://string-db.org/network/398580.Dshi_3501KEGG: rde:RD1_0121 spheroidene monooxygenase PMID: 17098896.
bchI protein networkhttps://string-db.org/network/398580.Dshi_3502Magnesium-chelatase 38 kDa subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
bchD protein networkhttps://string-db.org/network/398580.Dshi_3503Magnesium-chelatase 60 kDa subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
bchO protein networkhttps://string-db.org/network/398580.Dshi_3504Magnesium-chelatase 30 kDa subunit; PFAM: alpha/beta hydrolase fold; Thioesterase; phospholipase/Carboxylesterase KEGG: rsh:Rsph17029_1918 alpha/beta hydrolase fold Swissprot: P26174 Magnesium-ch [...]
Dshi_3505 protein networkhttps://string-db.org/network/398580.Dshi_3505PFAM: regulatory protein MarR KEGG: rsh:Rsph17029_2853 transcriptional regulator, MarR family; MarR family.
Dshi_3506 protein networkhttps://string-db.org/network/398580.Dshi_3506PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase KEGG: sil:SPO0069 hydrolase, carbon-nitrogen family.
grxC protein networkhttps://string-db.org/network/398580.Dshi_3507Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
crtI protein networkhttps://string-db.org/network/398580.Dshi_3508TIGRFAM: Zeta-phytoene desaturase PFAM: amine oxidase; FAD dependent oxidoreductase KEGG: rde:RD1_0120 phytoene dehydrogenase PMID: 17098896; Phytoene desaturase.
crtB protein networkhttps://string-db.org/network/398580.Dshi_3509PFAM: Squalene/phytoene synthase KEGG: rde:RD1_0119 phytoene synthase PMID: 17098896.
tspO protein networkhttps://string-db.org/network/398580.Dshi_3510Tryptophan rich sensory protein; PFAM: TspO/MBR family protein KEGG: jan:Jann_0035 TspO and MBR like proteins PMID: 17098896; 10648776.
Dshi_3511 protein networkhttps://string-db.org/network/398580.Dshi_3511KEGG: rsh:Rsph17029_2919 hypothetical protein.
crtC protein networkhttps://string-db.org/network/398580.Dshi_3512PFAM: hydroxyneurosporene synthase KEGG: rde:RD1_0116 hydroxyneurosporene dehydrogenase PMID: 17098896.
crtD protein networkhttps://string-db.org/network/398580.Dshi_3513Methoxyneurosporene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase PFAM: amine oxidase; FAD dependent oxidoreductase KEGG: jan:Jann_0183 amine oxidase Swissprot: P17059 PMID: 17098896.
crtE protein networkhttps://string-db.org/network/398580.Dshi_3514Geranylgeranyl pyrophosphate synthetase; PFAM: Polyprenyl synthetase KEGG: jan:Jann_0182 polyprenyl synthetase COG0142 PMID: 17098896; Farnesyltranstransferase; GGPP synthetase; Belongs to the FP [...]
crtF protein networkhttps://string-db.org/network/398580.Dshi_3515PFAM: O-methyltransferase family 2; Methyltransferase type 12 KEGG: jan:Jann_0181 O-methyltransferase, family 2 PMID: 17098896; O-methylase.
bchC protein networkhttps://string-db.org/network/398580.Dshi_3516TIGRFAM: chlorophyll synthesis pathway, BchC PFAM: Alcohol dehydrogenase GroES domain protein KEGG: jan:Jann_0180 chlorophyll synthesis pathway, BchC PMID: 17098896.
bchX protein networkhttps://string-db.org/network/398580.Dshi_3517KEGG: jan:Jann_0179 chlorophyllide reductase iron protein subunit X TIGRFAM: chlorophyllide reductase iron protein subunit X PFAM: NifH/frxC-family protein PMID: 17098896; 10648776; 8468299; Belo [...]
bchY protein networkhttps://string-db.org/network/398580.Dshi_3518TIGRFAM: chlorophyllide reductase subunit Y KEGG: jan:Jann_0178 chlorophyllide reductase subunit Y PMID: 17098896; 10648776; 8468299.
bchZ protein networkhttps://string-db.org/network/398580.Dshi_3519TIGRFAM: chlorophyllide reductase subunit Z PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197 KEGG: jan:Jann_0177 chlorophyllide reductase subunit Z PMID: 17098896 [...]
pufQ protein networkhttps://string-db.org/network/398580.Dshi_3520Protein pufQ; Required for bacteriochlorophyll biosynthesis. Directly involved in the assembly of both the B875 and B800-850 pigment-protein complexes.
pufB protein networkhttps://string-db.org/network/398580.Dshi_3521Light-harvesting protein B-870 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
pufA protein networkhttps://string-db.org/network/398580.Dshi_3522Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
pufL protein networkhttps://string-db.org/network/398580.Dshi_3523TIGRFAM: photosynthetic reaction center L subunit PFAM: photosynthetic reaction centre protein KEGG: rde:RD1_0104 photosynthetic reaction center L subunit PMID: 17098896; Photosynthetic reaction [...]
pufM protein networkhttps://string-db.org/network/398580.Dshi_3524Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
pufC protein networkhttps://string-db.org/network/398580.Dshi_3525Photosynthetic reaction center cytochrome c subunit precursor; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary elec [...]
dxs2 protein networkhttps://string-db.org/network/398580.Dshi_35261-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (D [...]
idi protein networkhttps://string-db.org/network/398580.Dshi_3527Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphospha [...]
bchP protein networkhttps://string-db.org/network/398580.Dshi_3528TIGRFAM: geranylgeranyl reductase PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase KEGG: jan:Jann_0167 geranylgeranyl reductase PMID: 10572128; 170 [...]
pucC2 protein networkhttps://string-db.org/network/398580.Dshi_3529PFAM: PUCC protein; major facilitator superfamily MFS_1 KEGG: rsp:RSP_0278 putative light-harvesting 1 (B870) complex assembly protein PucC PMID: 17098896.
bchG protein networkhttps://string-db.org/network/398580.Dshi_3530TIGRFAM: bacteriochlorophyll/chlorophyll synthetase PFAM: UbiA prenyltransferase KEGG: jan:Jann_0165 bacteriochlorophyll/chlorophyll synthetase PMID: 17098896.
ppsR protein networkhttps://string-db.org/network/398580.Dshi_3531TIGRFAM: PAS sensor protein; transcriptional regulator PpsR PMID: 10735869; 17098896.
ppaA protein networkhttps://string-db.org/network/398580.Dshi_3532REFSEQ: ref|ZP_01034604.1 regulatory protein PpaA PMID: 17098896.
bchF protein networkhttps://string-db.org/network/398580.Dshi_3533PFAM: 2-vinyl bacteriochlorophyllide hydratase KEGG: rsh:Rsph17029_1927 2-vinyl bacteriochlorophyllide hydratase PMID: 17098896.
bchN protein networkhttps://string-db.org/network/398580.Dshi_3534Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protoch [...]
bchB protein networkhttps://string-db.org/network/398580.Dshi_3535Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protoch [...]
bchH protein networkhttps://string-db.org/network/398580.Dshi_3536KEGG: rde:RD1_0137 magnesium-chelatase, subunit H TIGRFAM: magnesium chelatase, H subunit PFAM: CobN/magnesium chelatase PMID: 17098896; Mg-protoporphyrin IX chelatase subunit H.
bchL protein networkhttps://string-db.org/network/398580.Dshi_3537Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to re [...]
bchM protein networkhttps://string-db.org/network/398580.Dshi_3538TIGRFAM: magnesium protoporphyrin O-methyltransferase PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein; Methyltransferase type 11; Methyltransferase type 12 KEGG: rde:RD1_0135 m [...]
lhaA protein networkhttps://string-db.org/network/398580.Dshi_3539PFAM: PUCC protein; major facilitator superfamily MFS_1 KEGG: rde:RD1_0134 LhaA protein PMID: 17098896.
puhA protein networkhttps://string-db.org/network/398580.Dshi_3540TIGRFAM: photosynthetic reaction center H subunit PFAM: PRC-barrel domain protein; Photosynthetic reaction centre H subunit KEGG: rde:RD1_0133 photosynthetic reaction center H subunit PMID: 17098 [...]
puhB protein networkhttps://string-db.org/network/398580.Dshi_3541Putative photosynthetic complex assembly protein; KEGG: rde:RD1_0132 possible photosynthetic co REFSEQ: ref|ZP_01879036.1 putative photosynthetic complex assembly protein PMID: 17098896.
puhC protein networkhttps://string-db.org/network/398580.Dshi_3542PuhC protein; KEGG: rde:RD1_0131 REFSEQ: ref|YP_680552.1 PuhC Protein PMID: 17098896; 17098896.
Dshi_3543 protein networkhttps://string-db.org/network/398580.Dshi_3543KEGG: rde:RD1_0130 hypothetical protein.
acsF protein networkhttps://string-db.org/network/398580.Dshi_3544Aerobic magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results i [...]
puhE protein networkhttps://string-db.org/network/398580.Dshi_3545PuhE protein; KEGG: rde:RD1_0128 REFSEQ: ref|YP_680549.1 PuhE Protein PMID: 17098896.
hemA1 protein networkhttps://string-db.org/network/398580.Dshi_3546KEGG: rde:RD1_0127 5-aminolevulinic acid synthase TIGRFAM: 5-aminolevulinic acid synthase PFAM: aminotransferase class I and II PMID: 17098896; Delta-ALA synthetase; Delta-aminolevulinate synthas [...]
cycA2 protein networkhttps://string-db.org/network/398580.Dshi_3547JTo: PFAM: cytochrome c class I KEGG: jan:Jann_0148 cytochrome c, class I Swiss-Prot: cytochrome c class I, SignalP: signal peptide cleavage between VLA-DD, PSORT: inner membrane PMID: 8611557, 1 [...]
Dshi_3548 protein networkhttps://string-db.org/network/398580.Dshi_3548ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related SMART: AAA ATPase KEGG: jan:Jann_4278 ABC transporter related.
glpQ protein networkhttps://string-db.org/network/398580.Dshi_3549PFAM: glycerophosphoryl diester phosphodiesterase KEGG: rde:RD1_1698 glycerophosphoryl diester phosphodiesterase family protein, putative PRK: glpQ; periplasmic.
ubiG1 protein networkhttps://string-db.org/network/398580.Dshi_35503-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG [...]
pip protein networkhttps://string-db.org/network/398580.Dshi_3551KEGG: sil:SPO0066 proline iminopeptidase TIGRFAM: proline iminopeptidase PFAM: alpha/beta hydrolase fold; PAP; Prolyl aminopeptidase; PIP; Belongs to the peptidase S33 family.
Dshi_3552 protein networkhttps://string-db.org/network/398580.Dshi_3552PFAM: extracellular solute-binding protein family 5.
acs protein networkhttps://string-db.org/network/398580.Dshi_3553Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step [...]
adk1 protein networkhttps://string-db.org/network/398580.Dshi_3554Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolis [...]
Dshi_3555 protein networkhttps://string-db.org/network/398580.Dshi_3555KEGG: psa:PST_3903 hypothetical protein.
Dshi_3556 protein networkhttps://string-db.org/network/398580.Dshi_3556PFAM: Na+/solute symporter KEGG: sil:SPO1810 sodium/solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
Dshi_3557 protein networkhttps://string-db.org/network/398580.Dshi_3557PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative KEGG: sil:SPO1809 nucleotidyltransferase/CBS/cyclic nucleotide-b [...]
Dshi_3558 protein networkhttps://string-db.org/network/398580.Dshi_3558KEGG: sil:SPO1808 hypothetical protein.
dnaQ2 protein networkhttps://string-db.org/network/398580.Dshi_3559KEGG: sil:SPO1807 exonuclease, DNA polymerase III, epsilon subunit family TIGRFAM: DNA polymerase III, epsilon subunit PFAM: Exonuclease RNase T and DNA polymerase III SMART: Exonuclease COG0847.
rimP protein networkhttps://string-db.org/network/398580.Dshi_3560Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
nusA protein networkhttps://string-db.org/network/398580.Dshi_3561Transcription elongation protein nusA; Participates in both transcription termination and antitermination.
Dshi_3562 protein networkhttps://string-db.org/network/398580.Dshi_3562PFAM: protein of unknown function DUF448.
infB protein networkhttps://string-db.org/network/398580.Dshi_3563Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to [...]
mutT protein networkhttps://string-db.org/network/398580.Dshi_3564TIGRFAM: mutator MutT protein PFAM: NUDIX hydrolase KEGG: sil:SPO0060 mutator MutT protein.
argJ protein networkhttps://string-db.org/network/398580.Dshi_3565Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and [...]
ppiC protein networkhttps://string-db.org/network/398580.Dshi_3566PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase KEGG: jan:Jann_0290 PpiC-type peptidyl-prolyl cis-trans isomerase.
secA protein networkhttps://string-db.org/network/398580.Dshi_3567Preprotein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to [...]
Dshi_3568 protein networkhttps://string-db.org/network/398580.Dshi_3568Hypothetical protein; No domains found, significant blast hits only to JGI projects, good GC frame plot.
radC protein networkhttps://string-db.org/network/398580.Dshi_3569TIGRFAM: DNA repair protein radc PFAM: DNA repair protein RadC KEGG: pde:Pden_2304 DNA repair protein RadC; Belongs to the UPF0758 family.
dnaJ protein networkhttps://string-db.org/network/398580.Dshi_3570Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an [...]
dnaK protein networkhttps://string-db.org/network/398580.Dshi_3571Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
alkB2 protein networkhttps://string-db.org/network/398580.Dshi_3572Alpha-ketoglutarate-dependent dioxygenase alkB; KEGG: rde:RD1_0377 alkylated DNA repair protein TIGRFAM: DNA alkylation damage repair protein AlkB, COG: Alkylated DNA repair protein; Alkylated DN [...]
Dshi_3573 protein networkhttps://string-db.org/network/398580.Dshi_3573PFAM: ABC-2 type transporter KEGG: sil:SPO0040 ABC transporter, permease protein.
cysQ protein networkhttps://string-db.org/network/398580.Dshi_35743'(2'),5'-bisphosphate nucleotidase; Converts adenosine-3',5'-bisphosphate (PAP) to AMP. Belongs to the inositol monophosphatase superfamily. CysQ family.
kdsB protein networkhttps://string-db.org/network/398580.Dshi_3575KEGG: sil:SPO0038 3-deoxy-manno-octulosonate cytidylyltransferase TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase PFAM: acylneuraminate cytidylyltransferase.
Dshi_3576 protein networkhttps://string-db.org/network/398580.Dshi_3576PFAM: glycosyl transferase family 2 KEGG: pde:Pden_2298 glycosyl transferase, family 2; family 2.
galU protein networkhttps://string-db.org/network/398580.Dshi_3577TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase PFAM: Nucleotidyl transferase KEGG: jan:Jann_0218 UTP-glucose-1-phosphate uridylyltransferase,PMID:4284510.
Dshi_3578 protein networkhttps://string-db.org/network/398580.Dshi_3578PFAM: glycosyl transferase group 1 KEGG: pde:Pden_2295 glycosyl transferase, group 1, COG0438 - Glycosyltransferase; group 1.
Dshi_3579 protein networkhttps://string-db.org/network/398580.Dshi_3579KEGG: sil:SPO0036 hypothetical protein.
Dshi_3580 protein networkhttps://string-db.org/network/398580.Dshi_3580KEGG: sil:SPO0035 core-2/I-branching enzyme family protein.
Dshi_3581 protein networkhttps://string-db.org/network/398580.Dshi_3581KEGG: jan:Jann_0222 hypothetical protein.
ptsN protein networkhttps://string-db.org/network/398580.Dshi_3582PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 KEGG: rsq:Rsph17025_2769 PTS IIA-like nitrogen-regulatory protein PtsN, C [...]
hpf protein networkhttps://string-db.org/network/398580.Dshi_3583SSU ribosomal protein S30P / sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive an [...]
rpoN protein networkhttps://string-db.org/network/398580.Dshi_3584RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
Dshi_3585 protein networkhttps://string-db.org/network/398580.Dshi_3585ATPase; Pfam00005: ABC_tran, COG1137 - ABC-type (unclassified) transport system, ATPase component, BLAST hits to several ABC transporter, ATP-binding protein.
Dshi_3586 protein networkhttps://string-db.org/network/398580.Dshi_3586PFAM: OstA family protein KEGG: rsh:Rsph17029_2816 OstA family protein, COG1934 - Uncharacterized protein conserved in bacteria.
Dshi_3587 protein networkhttps://string-db.org/network/398580.Dshi_3587Hypothetical protein; Similar hit in Roseovarius, not conserved throughout many species.
yrbH protein networkhttps://string-db.org/network/398580.Dshi_3588KEGG: rde:RD1_0368 arabinose 5-phosphate isomerase TIGRFAM: KpsF/GutQ family protein PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.
Dshi_3589 protein networkhttps://string-db.org/network/398580.Dshi_3589PFAM: 3-5 exonuclease.
Dshi_3590 protein networkhttps://string-db.org/network/398580.Dshi_3590Ubiquinone dependent NADH dehydrogenase; Pfam07993: NAD_binding_4 domain, COG0702 - Predicted nucleoside-diphosphate-sugar epimerases.
Dshi_3591 protein networkhttps://string-db.org/network/398580.Dshi_3591CAAX amino terminal protease family protein; Domain hit: Abi, transmembrane helices predicted, weak BLAST hits.
Dshi_3592 protein networkhttps://string-db.org/network/398580.Dshi_3592Hypothetical protein; No domain hits, no BLAST hit, good GC frame plot over whole length.
uppP protein networkhttps://string-db.org/network/398580.Dshi_3593Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
Dshi_5001 protein networkhttps://string-db.org/network/398580.Dshi_5001Hypothtical protein.
xerC protein networkhttps://string-db.org/network/398580.Dshi_5002Hypothtical protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers [...]
Dshi_5003 protein networkhttps://string-db.org/network/398580.Dshi_5003Hypothetical protein.
dld protein networkhttps://string-db.org/network/398580.Dshi_5004D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
Dshi_5005 protein networkhttps://string-db.org/network/398580.Dshi_5005Conserved hypothetical protein.
ackA-2 protein networkhttps://string-db.org/network/398580.Dshi_5006Hypothetical protein; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
Dshi_5007 protein networkhttps://string-db.org/network/398580.Dshi_5007Hypothetical protein.
Dshi_5008 protein networkhttps://string-db.org/network/398580.Dshi_5008L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.